RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-208ENST00000494728 YTHDC2Q9H6S0 1430 aaKnown RBP17.32■□□□□ 0.36
VTI1A-208ENST00000494728 TMEM132EQ6IEE7 984 aa17.32■□□□□ 0.36
VTI1A-208ENST00000494728 STK26Q9P289 416 aa17.31■□□□□ 0.36
VTI1A-208ENST00000494728 PXDNQ92626 1479 aa17.31■□□□□ 0.36
VTI1A-208ENST00000494728 NUTM2BA6NNL0 878 aaPredicted RBP17.3■□□□□ 0.36
VTI1A-208ENST00000494728 NUTM2EB1AL46 878 aaPredicted RBP17.3■□□□□ 0.36
VTI1A-208ENST00000494728 WAPLQ7Z5K2 1190 aa17.3■□□□□ 0.36
VTI1A-208ENST00000494728 NUTM2AQ8IVF1 878 aaPredicted RBP17.3■□□□□ 0.36
VTI1A-208ENST00000494728 MARF1Q9Y4F3 1742 aaKnown RBP17.3■□□□□ 0.36
VTI1A-208ENST00000494728 ABCC11Q96J66 1382 aa17.29■□□□□ 0.36
VTI1A-208ENST00000494728 ADGRB1O14514 1584 aa17.29■□□□□ 0.36
VTI1A-208ENST00000494728 MEX3CQ5U5Q3 659 aaKnown RBP17.29■□□□□ 0.36
VTI1A-208ENST00000494728 SOS2Q07890 1332 aaPredicted RBP17.28■□□□□ 0.36
VTI1A-208ENST00000494728 KIF1AQ12756 1690 aa17.27■□□□□ 0.36
VTI1A-208ENST00000494728 USP32Q8NFA0 1604 aa17.27■□□□□ 0.36
VTI1A-208ENST00000494728 LRRC59Q96AG4 307 aaKnown RBP17.26■□□□□ 0.35
VTI1A-208ENST00000494728 EP400Q96L91 3159 aa17.26■□□□□ 0.35
VTI1A-208ENST00000494728 CFAP70Q5T0N1 1121 aa17.25■□□□□ 0.35
VTI1A-208ENST00000494728 AFF2P51816 1311 aa17.24■□□□□ 0.35
VTI1A-208ENST00000494728 ADGRB2O60241 1585 aa17.24■□□□□ 0.35
VTI1A-208ENST00000494728 NUTM2FA1L443 756 aa17.24■□□□□ 0.35
VTI1A-208ENST00000494728 C14orf93Q9H972 538 aaKnown RBP17.24■□□□□ 0.35
VTI1A-208ENST00000494728 DLC1Q96QB1 1528 aa17.24■□□□□ 0.35
VTI1A-208ENST00000494728 ACIN1Q9UKV3 1341 aaKnown RBP17.23■□□□□ 0.35
VTI1A-208ENST00000494728 ARHGEF28Q8N1W1 1705 aaKnown RBP17.23■□□□□ 0.35
VTI1A-208ENST00000494728 ABCA3Q99758 1704 aa17.23■□□□□ 0.35
VTI1A-208ENST00000494728 ZNF772Q68DY9 489 aaPredicted RBP17.22■□□□□ 0.35
VTI1A-208ENST00000494728 XPCQ01831 940 aaPredicted RBP17.21■□□□□ 0.35
VTI1A-208ENST00000494728 ESCO1Q5FWF5 840 aa17.21■□□□□ 0.35
VTI1A-208ENST00000494728 C8orf37Q96NL8 207 aa17.2■□□□□ 0.34
VTI1A-208ENST00000494728 RGS12O14924 1447 aa17.2■□□□□ 0.34
VTI1A-208ENST00000494728 DHX57Q6P158 1386 aaKnown RBP17.19■□□□□ 0.34
VTI1A-208ENST00000494728 ADAMTS2O95450 1211 aa17.19■□□□□ 0.34
VTI1A-208ENST00000494728 NPHP3Q7Z494 1330 aa17.19■□□□□ 0.34
VTI1A-208ENST00000494728 CDK12Q9NYV4 1490 aaPredicted RBP17.18■□□□□ 0.34
VTI1A-208ENST00000494728 FOXO3O43524 673 aa17.18■□□□□ 0.34
VTI1A-208ENST00000494728 SAFB2Q14151 953 aaKnown RBP eCLIP17.17■□□□□ 0.34
VTI1A-208ENST00000494728 TRPM3Q9HCF6 1732 aaPredicted RBP17.16■□□□□ 0.34
VTI1A-208ENST00000494728 PRAM1Q96QH2 718 aa17.16■□□□□ 0.34
VTI1A-208ENST00000494728 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.16■□□□□ 0.34
VTI1A-208ENST00000494728 SIRT1Q96EB6 747 aa17.15■□□□□ 0.34
VTI1A-208ENST00000494728 HRCP23327 699 aa17.14■□□□□ 0.33
VTI1A-208ENST00000494728 RXRBP28702 533 aa17.14■□□□□ 0.33
VTI1A-208ENST00000494728 PLCH1Q4KWH8 1693 aa17.13■□□□□ 0.33
VTI1A-208ENST00000494728 KIAA1210Q9ULL0 1709 aa17.13■□□□□ 0.33
VTI1A-208ENST00000494728 DCAF11Q8TEB1 546 aa17.13■□□□□ 0.33
VTI1A-208ENST00000494728 KDM2AQ9Y2K7 1162 aa17.13■□□□□ 0.33
VTI1A-208ENST00000494728 CRYBG1Q9Y4K1 1723 aa17.13■□□□□ 0.33
VTI1A-208ENST00000494728 ALS2Q96Q42 1657 aa17.12■□□□□ 0.33
VTI1A-208ENST00000494728 NGLY1Q96IV0 654 aa17.11■□□□□ 0.33
VTI1A-208ENST00000494728 ATRNO75882 1429 aa17.11■□□□□ 0.33
VTI1A-208ENST00000494728 TNS3Q68CZ2 1445 aa17.11■□□□□ 0.33
VTI1A-208ENST00000494728 ANKARQ7Z5J8 1434 aa17.11■□□□□ 0.33
VTI1A-208ENST00000494728 BCL9LQ86UU0 1499 aa17.11■□□□□ 0.33
VTI1A-208ENST00000494728 TULP4Q9NRJ4 1543 aa17.11■□□□□ 0.33
VTI1A-208ENST00000494728 ITSN1Q15811 1721 aa17.1■□□□□ 0.33
VTI1A-208ENST00000494728 QTRT2Q9H974 415 aaKnown RBP17.1■□□□□ 0.33
VTI1A-208ENST00000494728 TRAK1Q9UPV9 953 aa17.1■□□□□ 0.33
VTI1A-208ENST00000494728 SPATA31A3Q5VYP0 1347 aa17.1■□□□□ 0.33
VTI1A-208ENST00000494728 TOPAZ1Q8N9V7 1692 aa17.1■□□□□ 0.33
VTI1A-208ENST00000494728 SRCAPQ6ZRS2 3230 aa17.09■□□□□ 0.33
VTI1A-208ENST00000494728 UPF1Q92900 1129 aaKnown RBP eCLIP17.09■□□□□ 0.338e-7■■■■■ 27.8
VTI1A-208ENST00000494728 HIRIP3Q9BW71 556 aaPredicted RBP17.09■□□□□ 0.33
VTI1A-208ENST00000494728 PRR36Q9H6K5 1346 aa17.09■□□□□ 0.33
VTI1A-208ENST00000494728 GLI3P10071 1580 aa17.08■□□□□ 0.32
VTI1A-208ENST00000494728 FNBP4Q8N3X1 1017 aaPredicted RBP17.08■□□□□ 0.32
VTI1A-208ENST00000494728 PHF8Q9UPP1 1060 aa17.08■□□□□ 0.32
VTI1A-208ENST00000494728 MINK1Q8N4C8 1332 aaPredicted RBP17.07■□□□□ 0.32
VTI1A-208ENST00000494728 RBM6P78332 1123 aaKnown RBP17.07■□□□□ 0.32
VTI1A-208ENST00000494728 POGKQ9P215 609 aa17.07■□□□□ 0.32
VTI1A-208ENST00000494728 USP21Q9UK80 565 aa17.07■□□□□ 0.32
VTI1A-208ENST00000494728 BRWD3Q6RI45 1802 aa17.07■□□□□ 0.32
VTI1A-208ENST00000494728 NRAPQ86VF7 1730 aa17.07■□□□□ 0.32
VTI1A-208ENST00000494728 SLIT2O94813 1529 aa17.06■□□□□ 0.32
VTI1A-208ENST00000494728 ATP7BP35670 1465 aa17.06■□□□□ 0.32
VTI1A-208ENST00000494728 KRT28Q7Z3Y7 464 aa17.06■□□□□ 0.32
VTI1A-208ENST00000494728 NWD2Q9ULI1 1742 aa17.06■□□□□ 0.32
VTI1A-208ENST00000494728 PMFBP1Q8TBY8 1022 aa17.04■□□□□ 0.32
VTI1A-208ENST00000494728 CABLES1Q8TDN4 633 aa17.03■□□□□ 0.32
VTI1A-208ENST00000494728 QRICH2Q9H0J4 1663 aa17.03■□□□□ 0.32
VTI1A-208ENST00000494728 SBNO1A3KN83 1393 aa17.02■□□□□ 0.32
VTI1A-208ENST00000494728 TRPC5Q9UL62 973 aaPredicted RBP17.02■□□□□ 0.32
VTI1A-208ENST00000494728 TRPM1Q7Z4N2 1603 aa17.01■□□□□ 0.31
VTI1A-208ENST00000494728 PHRF1Q9P1Y6 1649 aaKnown RBP17.01■□□□□ 0.31
VTI1A-208ENST00000494728 RALGAPBQ86X10 1494 aa17■□□□□ 0.31
VTI1A-208ENST00000494728 WASLO00401 505 aaPredicted RBP17■□□□□ 0.31
VTI1A-208ENST00000494728 PLEKHG5O94827 1062 aa17■□□□□ 0.31
VTI1A-208ENST00000494728 STAC3Q96MF2 364 aa16.99■□□□□ 0.31
VTI1A-208ENST00000494728 EIF3AQ14152 1382 aaKnown RBP16.99■□□□□ 0.31
VTI1A-208ENST00000494728 NBPF1Q3BBV0 1214 aa16.98■□□□□ 0.31
VTI1A-208ENST00000494728 ARHGEF10O15013 1369 aa16.98■□□□□ 0.31
VTI1A-208ENST00000494728 COL14A1Q05707 1796 aaKnown RBP16.97■□□□□ 0.31
VTI1A-208ENST00000494728 PSME1Q06323 249 aa16.96■□□□□ 0.31
VTI1A-208ENST00000494728 LMOD2Q6P5Q4 547 aa16.96■□□□□ 0.31
VTI1A-208ENST00000494728 UNC5CLQ8IV45 518 aa16.95■□□□□ 0.3
VTI1A-208ENST00000494728 ATAD2Q6PL18 1390 aa16.94■□□□□ 0.3
VTI1A-208ENST00000494728 GJD4Q96KN9 370 aaPredicted RBP16.94■□□□□ 0.3
VTI1A-208ENST00000494728 NRKQ7Z2Y5 1582 aa16.93■□□□□ 0.3
VTI1A-208ENST00000494728 GPRASP1Q5JY77 1395 aa16.92■□□□□ 0.3
VTI1A-208ENST00000494728 NUDT16Q96DE0 195 aaKnown RBP16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms