RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 STK26Q9P289 416 aa18.92■□□□□ 0.62
SKA1-205ENST00000494518 CDC42BPGQ6DT37 1551 aa18.9■□□□□ 0.62
SKA1-205ENST00000494518 SOS2Q07890 1332 aaPredicted RBP18.9■□□□□ 0.62
SKA1-205ENST00000494518 RGS12O14924 1447 aa18.9■□□□□ 0.62
SKA1-205ENST00000494518 SPATA31E1Q6ZUB1 1445 aa18.9■□□□□ 0.62
SKA1-205ENST00000494518 NUTM2FA1L443 756 aa18.89■□□□□ 0.61
SKA1-205ENST00000494518 NGLY1Q96IV0 654 aa18.89■□□□□ 0.61
SKA1-205ENST00000494518 MPHOSPH9Q99550 1183 aa18.89■□□□□ 0.61
SKA1-205ENST00000494518 QTRT2Q9H974 415 aaKnown RBP18.89■□□□□ 0.61
SKA1-205ENST00000494518 CDK12Q9NYV4 1490 aaPredicted RBP18.89■□□□□ 0.61
SKA1-205ENST00000494518 ESCO1Q5FWF5 840 aa18.88■□□□□ 0.61
SKA1-205ENST00000494518 TMEM132EQ6IEE7 984 aa18.88■□□□□ 0.61
SKA1-205ENST00000494518 WAPLQ7Z5K2 1190 aa18.88■□□□□ 0.61
SKA1-205ENST00000494518 KNDC1Q76NI1 1749 aa18.88■□□□□ 0.61
SKA1-205ENST00000494518 XPCQ01831 940 aaPredicted RBP18.87■□□□□ 0.61
SKA1-205ENST00000494518 COL22A1Q8NFW1 1626 aaPredicted RBP18.86■□□□□ 0.61
SKA1-205ENST00000494518 PLEKHH1Q9ULM0 1364 aa18.86■□□□□ 0.61
SKA1-205ENST00000494518 RBM6P78332 1123 aaKnown RBP18.85■□□□□ 0.61
SKA1-205ENST00000494518 RGPD8O14715 1765 aaPredicted RBP18.84■□□□□ 0.61
SKA1-205ENST00000494518 FMN2Q9NZ56 1722 aa18.84■□□□□ 0.61
SKA1-205ENST00000494518 MARF1Q9Y4F3 1742 aaKnown RBP18.84■□□□□ 0.61
SKA1-205ENST00000494518 PXDNQ92626 1479 aa18.84■□□□□ 0.61
SKA1-205ENST00000494518 PIK3C2GO75747 1445 aa18.83■□□□□ 0.61
SKA1-205ENST00000494518 LRPPRCP42704 1394 aaKnown RBP18.83■□□□□ 0.61
SKA1-205ENST00000494518 ANKRD30BQ9BXX2 1392 aa18.83■□□□□ 0.61
SKA1-205ENST00000494518 TECPR2O15040 1411 aa18.83■□□□□ 0.6
SKA1-205ENST00000494518 NPHP3Q7Z494 1330 aa18.82■□□□□ 0.6
SKA1-205ENST00000494518 FOXO3O43524 673 aa18.82■□□□□ 0.6
SKA1-205ENST00000494518 USP21Q9UK80 565 aa18.82■□□□□ 0.6
SKA1-205ENST00000494518 MYOM2P54296 1465 aa18.8■□□□□ 0.6
SKA1-205ENST00000494518 YTHDC2Q9H6S0 1430 aaKnown RBP18.8■□□□□ 0.6
SKA1-205ENST00000494518 ABCC11Q96J66 1382 aa18.79■□□□□ 0.6
SKA1-205ENST00000494518 KIF1AQ12756 1690 aa18.77■□□□□ 0.6
SKA1-205ENST00000494518 TRPC5Q9UL62 973 aaPredicted RBP18.76■□□□□ 0.59
SKA1-205ENST00000494518 ATRNO75882 1429 aa18.75■□□□□ 0.59
SKA1-205ENST00000494518 SAFB2Q14151 953 aaKnown RBP eCLIP18.75■□□□□ 0.59
SKA1-205ENST00000494518 CFAP70Q5T0N1 1121 aa18.75■□□□□ 0.59
SKA1-205ENST00000494518 FNBP4Q8N3X1 1017 aaPredicted RBP18.75■□□□□ 0.59
SKA1-205ENST00000494518 PLEKHG5O94827 1062 aa18.74■□□□□ 0.59
SKA1-205ENST00000494518 EP400Q96L91 3159 aa18.73■□□□□ 0.59
SKA1-205ENST00000494518 NRXN1Q9ULB1 1477 aa18.72■□□□□ 0.59
SKA1-205ENST00000494518 RAB3GAP2Q9H2M9 1393 aa18.72■□□□□ 0.59
SKA1-205ENST00000494518 C14orf93Q9H972 538 aaKnown RBP18.72■□□□□ 0.59
SKA1-205ENST00000494518 BCL9LQ86UU0 1499 aa18.71■□□□□ 0.59
SKA1-205ENST00000494518 ATAD2Q6PL18 1390 aa18.71■□□□□ 0.59
SKA1-205ENST00000494518 DHX57Q6P158 1386 aaKnown RBP18.7■□□□□ 0.58
SKA1-205ENST00000494518 KRT28Q7Z3Y7 464 aa18.7■□□□□ 0.58
SKA1-205ENST00000494518 PRAM1Q96QH2 718 aa18.7■□□□□ 0.58
SKA1-205ENST00000494518 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.7■□□□□ 0.58
SKA1-205ENST00000494518 USP32Q8NFA0 1604 aa18.7■□□□□ 0.58
SKA1-205ENST00000494518 SPATA31A3Q5VYP0 1347 aa18.7■□□□□ 0.58
SKA1-205ENST00000494518 ABCA3Q99758 1704 aa18.69■□□□□ 0.58
SKA1-205ENST00000494518 PHF8Q9UPP1 1060 aa18.68■□□□□ 0.58
SKA1-205ENST00000494518 BRWD3Q6RI45 1802 aa18.67■□□□□ 0.58
SKA1-205ENST00000494518 TNS3Q68CZ2 1445 aa18.66■□□□□ 0.58
SKA1-205ENST00000494518 LMOD2Q6P5Q4 547 aa18.66■□□□□ 0.58
SKA1-205ENST00000494518 CABLES1Q8TDN4 633 aa18.66■□□□□ 0.58
SKA1-205ENST00000494518 POGKQ9P215 609 aa18.66■□□□□ 0.58
SKA1-205ENST00000494518 GLI3P10071 1580 aa18.66■□□□□ 0.58
SKA1-205ENST00000494518 PLCH1Q4KWH8 1693 aa18.66■□□□□ 0.58
SKA1-205ENST00000494518 HAP1P54257 671 aaPredicted RBP18.65■□□□□ 0.58
SKA1-205ENST00000494518 SIRT1Q96EB6 747 aa18.65■□□□□ 0.58
SKA1-205ENST00000494518 PMFBP1Q8TBY8 1022 aa18.64■□□□□ 0.57
SKA1-205ENST00000494518 GJD4Q96KN9 370 aaPredicted RBP18.64■□□□□ 0.57
SKA1-205ENST00000494518 HIRIP3Q9BW71 556 aaPredicted RBP18.64■□□□□ 0.57
SKA1-205ENST00000494518 KDM2AQ9Y2K7 1162 aa18.64■□□□□ 0.57
SKA1-205ENST00000494518 SRCAPQ6ZRS2 3230 aa18.64■□□□□ 0.57
SKA1-205ENST00000494518 SLIT2O94813 1529 aa18.64■□□□□ 0.57
SKA1-205ENST00000494518 DLC1Q96QB1 1528 aa18.64■□□□□ 0.57
SKA1-205ENST00000494518 ADGRB1O14514 1584 aa18.64■□□□□ 0.57
SKA1-205ENST00000494518 UNC5CLQ8IV45 518 aa18.63■□□□□ 0.57
SKA1-205ENST00000494518 TRAK1Q9UPV9 953 aa18.63■□□□□ 0.57
SKA1-205ENST00000494518 RALGAPBQ86X10 1494 aa18.63■□□□□ 0.57
SKA1-205ENST00000494518 ACIN1Q9UKV3 1341 aaKnown RBP18.62■□□□□ 0.57
SKA1-205ENST00000494518 ADGRB2O60241 1585 aa18.62■□□□□ 0.57
SKA1-205ENST00000494518 MINK1Q8N4C8 1332 aaPredicted RBP18.61■□□□□ 0.57
SKA1-205ENST00000494518 PSME1Q06323 249 aa18.61■□□□□ 0.57
SKA1-205ENST00000494518 TRPM3Q9HCF6 1732 aaPredicted RBP18.6■□□□□ 0.57
SKA1-205ENST00000494518 NWD2Q9ULI1 1742 aa18.6■□□□□ 0.57
SKA1-205ENST00000494518 DCAF11Q8TEB1 546 aa18.59■□□□□ 0.57
SKA1-205ENST00000494518 ANKARQ7Z5J8 1434 aa18.58■□□□□ 0.57
SKA1-205ENST00000494518 SBNO1A3KN83 1393 aa18.58■□□□□ 0.57
SKA1-205ENST00000494518 CCDC9Q9Y3X0 531 aaKnown RBP18.57■□□□□ 0.56
SKA1-205ENST00000494518 ARHGEF28Q8N1W1 1705 aaKnown RBP18.57■□□□□ 0.56
SKA1-205ENST00000494518 PRR36Q9H6K5 1346 aa18.56■□□□□ 0.56
SKA1-205ENST00000494518 ALS2Q96Q42 1657 aa18.56■□□□□ 0.56
SKA1-205ENST00000494518 ARHGEF10O15013 1369 aa18.55■□□□□ 0.56
SKA1-205ENST00000494518 NRAPQ86VF7 1730 aa18.55■□□□□ 0.56
SKA1-205ENST00000494518 TULP4Q9NRJ4 1543 aa18.54■□□□□ 0.56
SKA1-205ENST00000494518 SEPT12Q8IYM1 358 aa18.53■□□□□ 0.56
SKA1-205ENST00000494518 ITSN1Q15811 1721 aa18.52■□□□□ 0.56
SKA1-205ENST00000494518 FAM83GA6ND36 823 aa18.52■□□□□ 0.56
SKA1-205ENST00000494518 VPS72Q15906 364 aa18.52■□□□□ 0.56
SKA1-205ENST00000494518 CRYBG1Q9Y4K1 1723 aa18.52■□□□□ 0.55
SKA1-205ENST00000494518 WASLO00401 505 aaPredicted RBP18.51■□□□□ 0.55
SKA1-205ENST00000494518 ZRANB1Q9UGI0 708 aa18.51■□□□□ 0.55
SKA1-205ENST00000494518 GPRASP1Q5JY77 1395 aa18.51■□□□□ 0.55
SKA1-205ENST00000494518 A0A0G2JS52 829 aa18.5■□□□□ 0.55
SKA1-205ENST00000494518 MYT1Q01538 1121 aa18.5■□□□□ 0.55
SKA1-205ENST00000494518 COL14A1Q05707 1796 aaKnown RBP18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms