RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 AMER1Q5JTC6 1135 aaPredicted RBP13.6□□□□□ -0.23
MSH5-SAPCD1-207ENST00000493662 GZF1Q9H116 711 aaPredicted RBP13.6□□□□□ -0.23
MSH5-SAPCD1-207ENST00000493662 C14orf93Q9H972 538 aaKnown RBP13.6□□□□□ -0.23
MSH5-SAPCD1-207ENST00000493662 DUOX2Q9NRD8 1548 aa13.6□□□□□ -0.23
MSH5-SAPCD1-207ENST00000493662 DCTN1Q14203 1278 aa13.59□□□□□ -0.23
MSH5-SAPCD1-207ENST00000493662 EMILIN1Q9Y6C2 1016 aa13.59□□□□□ -0.23
MSH5-SAPCD1-207ENST00000493662 RTF1Q92541 710 aaKnown RBP13.59□□□□□ -0.23
MSH5-SAPCD1-207ENST00000493662 SLKQ9H2G2 1235 aaPredicted RBP13.59□□□□□ -0.23
MSH5-SAPCD1-207ENST00000493662 ADGRL2O95490 1459 aa13.59□□□□□ -0.23
MSH5-SAPCD1-207ENST00000493662 NLRP6P59044 892 aa13.59□□□□□ -0.23
MSH5-SAPCD1-207ENST00000493662 RUNDC1Q96C34 613 aa13.59□□□□□ -0.23
MSH5-SAPCD1-207ENST00000493662 ARID3AQ99856 593 aa13.59□□□□□ -0.23
MSH5-SAPCD1-207ENST00000493662 MYH16Q9H6N6 1097 aa13.59□□□□□ -0.23
MSH5-SAPCD1-207ENST00000493662 E9PSI1 815 aa13.58□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 YEATS2Q9ULM3 1422 aa13.58□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 TPRNQ4KMQ1 711 aa13.58□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 RALGAPBQ86X10 1494 aa13.58□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 FAM43AQ8N2R8 423 aa13.57□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 EXOSC9Q06265 439 aaKnown RBP13.57□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 ZMYND15Q9H091 742 aa13.56□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 STAC3Q96MF2 364 aa13.56□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 CSB-PGBD3P0DP91 1061 aa13.56□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 SPINK5Q9NQ38 1064 aaPredicted RBP13.56□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 ZNF330Q9Y3S2 320 aaPredicted RBP13.56□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 PLA2R1Q13018 1463 aa13.56□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 MIS18AQ9NYP9 233 aa13.56□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 ZNF518AQ6AHZ1 1483 aa13.55□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 GOLGA6L3A6NEY3 463 aa13.55□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 NUDT16Q96DE0 195 aaKnown RBP13.55□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 SPATA31E1Q6ZUB1 1445 aa13.55□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 SHANK2Q9UPX8 1470 aa13.55□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 GCC2Q8IWJ2 1684 aa13.55□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 DMRT2Q9Y5R5 561 aa13.54□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 SCAF11Q99590 1463 aaKnown RBP13.54□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 ESCO1Q5FWF5 840 aa13.54□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 SULT6B1Q6IMI4 303 aa13.54□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 C1orf115Q9H7X2 142 aa13.54□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 PSME1Q06323 249 aa13.53□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 WWC1Q8IX03 1113 aa13.53□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 CDC42BPAQ5VT25 1732 aa13.53□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 ABTB2Q8N961 1025 aa13.53□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 RTEL1-TNFRSF6BF6WH68 1400 aa13.52□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 TNNQ9UQP3 1299 aa13.52□□□□□ -0.24
MSH5-SAPCD1-207ENST00000493662 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.52□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 EIF2S2P20042 333 aaKnown RBP13.51□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 ATP7AQ04656 1500 aa13.51□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 NGEFQ8N5V2 710 aa13.51□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 AMOTL2Q9Y2J4 779 aa13.5□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 USHBP1Q8N6Y0 703 aa13.5□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 FAM83GA6ND36 823 aa13.5□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 ZCCHC11Q5TAX3 1644 aaKnown RBP13.49□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 CCDC61Q9Y6R9 512 aa13.49□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 RPGRIP1LQ68CZ1 1315 aa13.49□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 FYB1O15117 783 aa13.49□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 NPATQ14207 1427 aa13.49□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 MSNP26038 577 aaKnown RBP13.49□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 MFAP1P55081 439 aaKnown RBP13.49□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 MS4A1P11836 297 aa13.48□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 FRAT2O75474 233 aaPredicted RBP13.48□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 NCLP19338 710 aaKnown RBP13.48□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 CDK11BP21127 795 aaKnown RBP13.48□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 DUSP27Q5VZP5 1158 aa13.48□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 ZKSCAN2Q63HK3 967 aa13.48□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 DNTTIP2Q5QJE6 756 aaKnown RBP13.47□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 SMG6Q86US8 1419 aaKnown RBP13.47□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 FOXO3O43524 673 aa13.47□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 SLFN5Q08AF3 891 aa13.47□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 TAOK2Q9UL54 1235 aa13.47□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 MCM10Q7L590 875 aa13.47□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 PLEKHH1Q9ULM0 1364 aa13.46□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 FOXD4L1Q9NU39 408 aa13.46□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 ATP10AO60312 1499 aa13.46□□□□□ -0.25
MSH5-SAPCD1-207ENST00000493662 WASLO00401 505 aaPredicted RBP13.46□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 DZIP1LQ8IYY4 767 aaKnown RBP13.46□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 THEMISQ8N1K5 641 aaPredicted RBP13.46□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 LNPKQ9C0E8 428 aa13.46□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 PARD3Q8TEW0 1356 aa13.46□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 UHRF1BP1Q6BDS2 1440 aa13.45□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 TMPOP42166 694 aaKnown RBP13.45□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 MYO5CQ9NQX4 1742 aa13.45□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 IPO8O15397 1037 aaKnown RBP13.45□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 RRP9O43818 475 aaKnown RBP13.45□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 GOLGA6L22H0YM25 854 aa13.44□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 ZC3H6P61129 1189 aaKnown RBP13.44□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 ANKRD45Q5TZF3 282 aa13.44□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 RWDD1Q9H446 243 aaPredicted RBP13.44□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 TSPOAP1O95153 1857 aa13.44□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 PROSER2Q86WR7 435 aaPredicted RBP13.44□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 NOB1Q9ULX3 412 aaKnown RBP13.44□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 AEBP1Q8IUX7 1158 aa13.44□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 CCDC9Q9Y3X0 531 aaKnown RBP13.44□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 HSP90AB2PQ58FF8 381 aa13.43□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 OS9Q13438 667 aaPredicted RBP13.43□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 CDC42BPBQ9Y5S2 1711 aa13.42□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 POGZQ7Z3K3 1410 aa13.42□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 MAST1Q9Y2H9 1570 aa13.42□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 PREX2Q70Z35 1606 aa13.42□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 PTMAP06454 111 aaKnown RBP13.42□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 ZMYM3Q14202 1370 aa13.41□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 BACH2Q9BYV9 841 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms