RNA–Protein interactions for RNA: ENST00000493075.1

LRTM1-202, Transcript of leucine rich repeats and transmembrane domains 1, humanhuman

TSL 1 (best) BASIC

Gene LRTM1, Length 1,318 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRTM1-202ENST00000493075 IFT172Q9UG01 1749 aa16.83■□□□□ 0.28
LRTM1-202ENST00000493075 NALCNQ8IZF0 1738 aa16.82■□□□□ 0.28
LRTM1-202ENST00000493075 SOS2Q07890 1332 aaPredicted RBP16.82■□□□□ 0.28
LRTM1-202ENST00000493075 DDX17Q92841 729 aaKnown RBP16.81■□□□□ 0.28
LRTM1-202ENST00000493075 MEX3CQ5U5Q3 659 aaKnown RBP16.8■□□□□ 0.28
LRTM1-202ENST00000493075 DCAF11Q8TEB1 546 aa16.8■□□□□ 0.28
LRTM1-202ENST00000493075 PLEKHH1Q9ULM0 1364 aa16.79■□□□□ 0.28
LRTM1-202ENST00000493075 ESCO1Q5FWF5 840 aa16.79■□□□□ 0.28
LRTM1-202ENST00000493075 ZNF772Q68DY9 489 aaPredicted RBP16.78■□□□□ 0.28
LRTM1-202ENST00000493075 KDM2AQ9Y2K7 1162 aa16.78■□□□□ 0.28
LRTM1-202ENST00000493075 LRP6O75581 1613 aa16.78■□□□□ 0.28
LRTM1-202ENST00000493075 NHSL1Q5SYE7 1610 aa16.78■□□□□ 0.28
LRTM1-202ENST00000493075 SHPRHQ149N8 1683 aa16.77■□□□□ 0.28
LRTM1-202ENST00000493075 NUTM2BA6NNL0 878 aaPredicted RBP16.77■□□□□ 0.28
LRTM1-202ENST00000493075 NUTM2EB1AL46 878 aaPredicted RBP16.77■□□□□ 0.28
LRTM1-202ENST00000493075 NUTM2AQ8IVF1 878 aaPredicted RBP16.77■□□□□ 0.28
LRTM1-202ENST00000493075 CDC42BPGQ6DT37 1551 aa16.77■□□□□ 0.28
LRTM1-202ENST00000493075 NPHP3Q7Z494 1330 aa16.77■□□□□ 0.27
LRTM1-202ENST00000493075 PNPLA6Q8IY17 1366 aa16.77■□□□□ 0.27
LRTM1-202ENST00000493075 ADRA2BP18089 450 aa16.75■□□□□ 0.27
LRTM1-202ENST00000493075 PRAM1Q96QH2 718 aa16.75■□□□□ 0.27
LRTM1-202ENST00000493075 LAMC1P11047 1609 aa16.75■□□□□ 0.27
LRTM1-202ENST00000493075 KNDC1Q76NI1 1749 aa16.74■□□□□ 0.27
LRTM1-202ENST00000493075 FOXO3O43524 673 aa16.73■□□□□ 0.27
LRTM1-202ENST00000493075 POGKQ9P215 609 aa16.73■□□□□ 0.27
LRTM1-202ENST00000493075 NUTM2FA1L443 756 aa16.72■□□□□ 0.27
LRTM1-202ENST00000493075 DLC1Q96QB1 1528 aa16.72■□□□□ 0.27
LRTM1-202ENST00000493075 ADGRB1O14514 1584 aa16.71■□□□□ 0.27
LRTM1-202ENST00000493075 TRAK1Q9UPV9 953 aa16.7■□□□□ 0.26
LRTM1-202ENST00000493075 SAFB2Q14151 953 aaKnown RBP eCLIP16.7■□□□□ 0.26
LRTM1-202ENST00000493075 AFF2P51816 1311 aa16.69■□□□□ 0.26
LRTM1-202ENST00000493075 PXDNQ92626 1479 aa16.68■□□□□ 0.26
LRTM1-202ENST00000493075 RXRBP28702 533 aa16.68■□□□□ 0.26
LRTM1-202ENST00000493075 C8orf37Q96NL8 207 aa16.68■□□□□ 0.26
LRTM1-202ENST00000493075 PHF8Q9UPP1 1060 aa16.68■□□□□ 0.26
LRTM1-202ENST00000493075 KRT28Q7Z3Y7 464 aa16.67■□□□□ 0.26
LRTM1-202ENST00000493075 PIAS4Q8N2W9 510 aaPredicted RBP16.67■□□□□ 0.26
LRTM1-202ENST00000493075 NGLY1Q96IV0 654 aa16.67■□□□□ 0.26
LRTM1-202ENST00000493075 ADAMTS2O95450 1211 aa16.66■□□□□ 0.26
LRTM1-202ENST00000493075 XPCQ01831 940 aaPredicted RBP16.66■□□□□ 0.26
LRTM1-202ENST00000493075 PSME1Q06323 249 aa16.66■□□□□ 0.26
LRTM1-202ENST00000493075 ANKARQ7Z5J8 1434 aa16.65■□□□□ 0.26
LRTM1-202ENST00000493075 SPATA31A3Q5VYP0 1347 aa16.65■□□□□ 0.26
LRTM1-202ENST00000493075 FNBP4Q8N3X1 1017 aaPredicted RBP16.65■□□□□ 0.26
LRTM1-202ENST00000493075 QTRT2Q9H974 415 aaKnown RBP16.65■□□□□ 0.26
LRTM1-202ENST00000493075 WASLO00401 505 aaPredicted RBP16.64■□□□□ 0.25
LRTM1-202ENST00000493075 FMN2Q9NZ56 1722 aa16.64■□□□□ 0.25
LRTM1-202ENST00000493075 EIF3AQ14152 1382 aaKnown RBP16.63■□□□□ 0.25
LRTM1-202ENST00000493075 MINK1Q8N4C8 1332 aaPredicted RBP16.62■□□□□ 0.25
LRTM1-202ENST00000493075 RBM6P78332 1123 aaKnown RBP16.62■□□□□ 0.25
LRTM1-202ENST00000493075 HIRIP3Q9BW71 556 aaPredicted RBP16.62■□□□□ 0.25
LRTM1-202ENST00000493075 SBNO1A3KN83 1393 aa16.61■□□□□ 0.25
LRTM1-202ENST00000493075 COL22A1Q8NFW1 1626 aaPredicted RBP16.6■□□□□ 0.25
LRTM1-202ENST00000493075 CDK12Q9NYV4 1490 aaPredicted RBP16.6■□□□□ 0.25
LRTM1-202ENST00000493075 ADGRB2O60241 1585 aa16.6■□□□□ 0.25
LRTM1-202ENST00000493075 USP21Q9UK80 565 aa16.6■□□□□ 0.25
LRTM1-202ENST00000493075 KIF1AQ12756 1690 aa16.6■□□□□ 0.25
LRTM1-202ENST00000493075 NBPF1Q3BBV0 1214 aa16.59■□□□□ 0.25
LRTM1-202ENST00000493075 PMFBP1Q8TBY8 1022 aa16.59■□□□□ 0.25
LRTM1-202ENST00000493075 L3MBTL2Q969R5 705 aa16.59■□□□□ 0.25
LRTM1-202ENST00000493075 PRR36Q9H6K5 1346 aa16.58■□□□□ 0.25
LRTM1-202ENST00000493075 SIN3AQ96ST3 1273 aa16.58■□□□□ 0.24
LRTM1-202ENST00000493075 TRPC5Q9UL62 973 aaPredicted RBP16.58■□□□□ 0.24
LRTM1-202ENST00000493075 TNS3Q68CZ2 1445 aa16.57■□□□□ 0.24
LRTM1-202ENST00000493075 ARHGEF10O15013 1369 aa16.55■□□□□ 0.24
LRTM1-202ENST00000493075 GPRASP1Q5JY77 1395 aa16.55■□□□□ 0.24
LRTM1-202ENST00000493075 NUDT16Q96DE0 195 aaKnown RBP16.55■□□□□ 0.24
LRTM1-202ENST00000493075 CDK19Q9BWU1 502 aa16.55■□□□□ 0.24
LRTM1-202ENST00000493075 TULP4Q9NRJ4 1543 aa16.55■□□□□ 0.24
LRTM1-202ENST00000493075 NGDNQ8NEJ9 315 aaKnown RBP16.54■□□□□ 0.24
LRTM1-202ENST00000493075 KIAA1210Q9ULL0 1709 aa16.54■□□□□ 0.24
LRTM1-202ENST00000493075 NEUROD1Q13562 356 aa16.53■□□□□ 0.24
LRTM1-202ENST00000493075 BCL9LQ86UU0 1499 aa16.53■□□□□ 0.24
LRTM1-202ENST00000493075 MSH5O43196 834 aa16.52■□□□□ 0.24
LRTM1-202ENST00000493075 ATRNO75882 1429 aa16.52■□□□□ 0.24
LRTM1-202ENST00000493075 HAP1P54257 671 aaPredicted RBP16.52■□□□□ 0.24
LRTM1-202ENST00000493075 TRIM26Q12899 539 aaPredicted RBP16.52■□□□□ 0.24
LRTM1-202ENST00000493075 LMOD2Q6P5Q4 547 aa16.52■□□□□ 0.24
LRTM1-202ENST00000493075 UPF1Q92900 1129 aaKnown RBP eCLIP16.52■□□□□ 0.24
LRTM1-202ENST00000493075 CCDC61Q9Y6R9 512 aa16.52■□□□□ 0.24
LRTM1-202ENST00000493075 USP32Q8NFA0 1604 aa16.52■□□□□ 0.24
LRTM1-202ENST00000493075 UNC5CLQ8IV45 518 aa16.51■□□□□ 0.23
LRTM1-202ENST00000493075 CENPJQ9HC77 1338 aaPredicted RBP16.51■□□□□ 0.23
LRTM1-202ENST00000493075 PLEKHG3A1L390 1219 aa16.5■□□□□ 0.23
LRTM1-202ENST00000493075 CABLES1Q8TDN4 633 aa16.5■□□□□ 0.23
LRTM1-202ENST00000493075 GJD4Q96KN9 370 aaPredicted RBP16.49■□□□□ 0.23
LRTM1-202ENST00000493075 RGS12O14924 1447 aa16.49■□□□□ 0.23
LRTM1-202ENST00000493075 ARHGEF28Q8N1W1 1705 aaKnown RBP16.49■□□□□ 0.23
LRTM1-202ENST00000493075 ATP7BP35670 1465 aa16.49■□□□□ 0.23
LRTM1-202ENST00000493075 RGPD8O14715 1765 aaPredicted RBP16.49■□□□□ 0.23
LRTM1-202ENST00000493075 SLIT2O94813 1529 aa16.48■□□□□ 0.23
LRTM1-202ENST00000493075 NBPF8Q3BBV2 869 aa16.46■□□□□ 0.23
LRTM1-202ENST00000493075 POLR3AO14802 1390 aaPredicted RBP16.46■□□□□ 0.23
LRTM1-202ENST00000493075 FAM83GA6ND36 823 aa16.45■□□□□ 0.22
LRTM1-202ENST00000493075 PAK3O75914 559 aaPredicted RBP16.45■□□□□ 0.22
LRTM1-202ENST00000493075 ACEP12821 1306 aa16.45■□□□□ 0.22
LRTM1-202ENST00000493075 SRPK2P78362 688 aaKnown RBP16.45■□□□□ 0.22
LRTM1-202ENST00000493075 VPS72Q15906 364 aa16.45■□□□□ 0.22
LRTM1-202ENST00000493075 ROCK2O75116 1388 aaKnown RBP16.44■□□□□ 0.22
LRTM1-202ENST00000493075 PLEKHG5O94827 1062 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms