RNA–Protein interactions for RNA: ENST00000491421.5

LSM2-213, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM2, Length 820 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM2-213ENST00000491421 NHSL1Q5SYE7 1610 aa12.15□□□□□ -0.47
LSM2-213ENST00000491421 NRXN1Q9ULB1 1477 aa12.14□□□□□ -0.47
LSM2-213ENST00000491421 YTHDC2Q9H6S0 1430 aaKnown RBP12.14□□□□□ -0.47
LSM2-213ENST00000491421 WAPLQ7Z5K2 1190 aa12.14□□□□□ -0.47
LSM2-213ENST00000491421 C14orf93Q9H972 538 aaKnown RBP12.14□□□□□ -0.47
LSM2-213ENST00000491421 CDC42BPGQ6DT37 1551 aa12.13□□□□□ -0.47
LSM2-213ENST00000491421 CFAP70Q5T0N1 1121 aa12.13□□□□□ -0.47
LSM2-213ENST00000491421 PNPLA6Q8IY17 1366 aa12.13□□□□□ -0.47
LSM2-213ENST00000491421 PLEKHH1Q9ULM0 1364 aa12.13□□□□□ -0.47
LSM2-213ENST00000491421 ESCO1Q5FWF5 840 aa12.12□□□□□ -0.47
LSM2-213ENST00000491421 ZNF772Q68DY9 489 aaPredicted RBP12.12□□□□□ -0.47
LSM2-213ENST00000491421 DHX57Q6P158 1386 aaKnown RBP12.12□□□□□ -0.47
LSM2-213ENST00000491421 SOS2Q07890 1332 aaPredicted RBP12.11□□□□□ -0.47
LSM2-213ENST00000491421 NUTM2FA1L443 756 aa12.1□□□□□ -0.47
LSM2-213ENST00000491421 SIRT1Q96EB6 747 aa12.1□□□□□ -0.47
LSM2-213ENST00000491421 KNDC1Q76NI1 1749 aa12.1□□□□□ -0.47
LSM2-213ENST00000491421 LAMC1P11047 1609 aa12.1□□□□□ -0.47
LSM2-213ENST00000491421 NPHP3Q7Z494 1330 aa12.1□□□□□ -0.47
LSM2-213ENST00000491421 DCAF11Q8TEB1 546 aa12.09□□□□□ -0.47
LSM2-213ENST00000491421 KDM2AQ9Y2K7 1162 aa12.09□□□□□ -0.47
LSM2-213ENST00000491421 PRAM1Q96QH2 718 aa12.08□□□□□ -0.48
LSM2-213ENST00000491421 AFF2P51816 1311 aa12.08□□□□□ -0.48
LSM2-213ENST00000491421 FOXO3O43524 673 aa12.07□□□□□ -0.48
LSM2-213ENST00000491421 SAFB2Q14151 953 aaKnown RBP eCLIP12.07□□□□□ -0.48
LSM2-213ENST00000491421 STAC3Q96MF2 364 aa12.07□□□□□ -0.48
LSM2-213ENST00000491421 C8orf37Q96NL8 207 aa12.07□□□□□ -0.48
LSM2-213ENST00000491421 ADAMTS2O95450 1211 aa12.06□□□□□ -0.48
LSM2-213ENST00000491421 XPCQ01831 940 aaPredicted RBP12.06□□□□□ -0.48
LSM2-213ENST00000491421 POGKQ9P215 609 aa12.06□□□□□ -0.48
LSM2-213ENST00000491421 PXDNQ92626 1479 aa12.06□□□□□ -0.48
LSM2-213ENST00000491421 ADGRB1O14514 1584 aa12.05□□□□□ -0.48
LSM2-213ENST00000491421 RXRBP28702 533 aa12.05□□□□□ -0.48
LSM2-213ENST00000491421 DLC1Q96QB1 1528 aa12.05□□□□□ -0.48
LSM2-213ENST00000491421 NGLY1Q96IV0 654 aa12.04□□□□□ -0.48
LSM2-213ENST00000491421 TRAK1Q9UPV9 953 aa12.04□□□□□ -0.48
LSM2-213ENST00000491421 FMN2Q9NZ56 1722 aa12.03□□□□□ -0.48
LSM2-213ENST00000491421 SLC24A1O60721 1099 aa12.03□□□□□ -0.48
LSM2-213ENST00000491421 PHF8Q9UPP1 1060 aa12.02□□□□□ -0.49
LSM2-213ENST00000491421 COL22A1Q8NFW1 1626 aaPredicted RBP12.01□□□□□ -0.49
LSM2-213ENST00000491421 KRT28Q7Z3Y7 464 aa12.01□□□□□ -0.49
LSM2-213ENST00000491421 HIRIP3Q9BW71 556 aaPredicted RBP12.01□□□□□ -0.49
LSM2-213ENST00000491421 QTRT2Q9H974 415 aaKnown RBP12.01□□□□□ -0.49
LSM2-213ENST00000491421 KIF1AQ12756 1690 aa12□□□□□ -0.49
LSM2-213ENST00000491421 SPATA31A3Q5VYP0 1347 aa12□□□□□ -0.49
LSM2-213ENST00000491421 MINK1Q8N4C8 1332 aaPredicted RBP12□□□□□ -0.49
LSM2-213ENST00000491421 ANKARQ7Z5J8 1434 aa12□□□□□ -0.49
LSM2-213ENST00000491421 CDK12Q9NYV4 1490 aaPredicted RBP12□□□□□ -0.49
LSM2-213ENST00000491421 ADGRB2O60241 1585 aa12□□□□□ -0.49
LSM2-213ENST00000491421 RBM6P78332 1123 aaKnown RBP11.99□□□□□ -0.49
LSM2-213ENST00000491421 PSME1Q06323 249 aa11.99□□□□□ -0.49
LSM2-213ENST00000491421 USP21Q9UK80 565 aa11.99□□□□□ -0.49
LSM2-213ENST00000491421 EIF3AQ14152 1382 aaKnown RBP11.99□□□□□ -0.49
LSM2-213ENST00000491421 FNBP4Q8N3X1 1017 aaPredicted RBP11.98□□□□□ -0.49
LSM2-213ENST00000491421 TNS3Q68CZ2 1445 aa11.97□□□□□ -0.49
LSM2-213ENST00000491421 WASLO00401 505 aaPredicted RBP11.97□□□□□ -0.49
LSM2-213ENST00000491421 PMFBP1Q8TBY8 1022 aa11.97□□□□□ -0.49
LSM2-213ENST00000491421 TRPC5Q9UL62 973 aaPredicted RBP11.97□□□□□ -0.49
LSM2-213ENST00000491421 RGS12O14924 1447 aa11.96□□□□□ -0.49
LSM2-213ENST00000491421 SBNO1A3KN83 1393 aa11.96□□□□□ -0.49
LSM2-213ENST00000491421 HAP1P54257 671 aaPredicted RBP11.96□□□□□ -0.49
LSM2-213ENST00000491421 LMOD2Q6P5Q4 547 aa11.96□□□□□ -0.49
LSM2-213ENST00000491421 TULP4Q9NRJ4 1543 aa11.96□□□□□ -0.5
LSM2-213ENST00000491421 ARHGEF10O15013 1369 aa11.95□□□□□ -0.5
LSM2-213ENST00000491421 PRR36Q9H6K5 1346 aa11.95□□□□□ -0.5
LSM2-213ENST00000491421 USP32Q8NFA0 1604 aa11.95□□□□□ -0.5
LSM2-213ENST00000491421 ATRNO75882 1429 aa11.94□□□□□ -0.5
LSM2-213ENST00000491421 GPRASP1Q5JY77 1395 aa11.94□□□□□ -0.5
LSM2-213ENST00000491421 PLEKHG5O94827 1062 aa11.94□□□□□ -0.5
LSM2-213ENST00000491421 UPF1Q92900 1129 aaKnown RBP eCLIP11.94□□□□□ -0.5
LSM2-213ENST00000491421 NBPF1Q3BBV0 1214 aa11.93□□□□□ -0.5
LSM2-213ENST00000491421 CABLES1Q8TDN4 633 aa11.93□□□□□ -0.5
LSM2-213ENST00000491421 BCL9LQ86UU0 1499 aa11.93□□□□□ -0.5
LSM2-213ENST00000491421 ARHGEF28Q8N1W1 1705 aaKnown RBP11.92□□□□□ -0.5
LSM2-213ENST00000491421 NGDNQ8NEJ9 315 aaKnown RBP11.92□□□□□ -0.5
LSM2-213ENST00000491421 RGPD8O14715 1765 aaPredicted RBP11.92□□□□□ -0.5
LSM2-213ENST00000491421 ATP7BP35670 1465 aa11.91□□□□□ -0.5
LSM2-213ENST00000491421 UNC5CLQ8IV45 518 aa11.91□□□□□ -0.5
LSM2-213ENST00000491421 L3MBTL2Q969R5 705 aa11.91□□□□□ -0.5
LSM2-213ENST00000491421 NUDT16Q96DE0 195 aaKnown RBP11.91□□□□□ -0.5
LSM2-213ENST00000491421 CDK19Q9BWU1 502 aa11.91□□□□□ -0.5
LSM2-213ENST00000491421 KIAA1210Q9ULL0 1709 aa11.91□□□□□ -0.5
LSM2-213ENST00000491421 SLIT2O94813 1529 aa11.91□□□□□ -0.5
LSM2-213ENST00000491421 NEUROD1Q13562 356 aa11.9□□□□□ -0.5
LSM2-213ENST00000491421 GJD4Q96KN9 370 aaPredicted RBP11.9□□□□□ -0.5
LSM2-213ENST00000491421 SIN3AQ96ST3 1273 aa11.9□□□□□ -0.5
LSM2-213ENST00000491421 PAK3O75914 559 aaPredicted RBP11.89□□□□□ -0.51
LSM2-213ENST00000491421 ATAD2Q6PL18 1390 aa11.89□□□□□ -0.51
LSM2-213ENST00000491421 MARF1Q9Y4F3 1742 aaKnown RBP11.89□□□□□ -0.51
LSM2-213ENST00000491421 CENPJQ9HC77 1338 aaPredicted RBP11.88□□□□□ -0.51
LSM2-213ENST00000491421 TRPM3Q9HCF6 1732 aaPredicted RBP11.87□□□□□ -0.51
LSM2-213ENST00000491421 CCDC61Q9Y6R9 512 aa11.87□□□□□ -0.51
LSM2-213ENST00000491421 RALGAPBQ86X10 1494 aa11.87□□□□□ -0.51
LSM2-213ENST00000491421 FAM83GA6ND36 823 aa11.86□□□□□ -0.51
LSM2-213ENST00000491421 SRPK2P78362 688 aaKnown RBP11.86□□□□□ -0.51
LSM2-213ENST00000491421 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.86□□□□□ -0.51
LSM2-213ENST00000491421 POLR3AO14802 1390 aaPredicted RBP11.85□□□□□ -0.51
LSM2-213ENST00000491421 PLEKHG3A1L390 1219 aa11.85□□□□□ -0.51
LSM2-213ENST00000491421 VPS72Q15906 364 aa11.85□□□□□ -0.51
LSM2-213ENST00000491421 CCDC9Q9Y3X0 531 aaKnown RBP11.85□□□□□ -0.51
LSM2-213ENST00000491421 ITSN1Q15811 1721 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms