RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 LRPPRCP42704 1394 aaKnown RBP23.34■■□□□ 1.33
SMPD4-220ENST00000491319 STK26Q9P289 416 aa23.33■■□□□ 1.33
SMPD4-220ENST00000491319 ACIN1Q9UKV3 1341 aaKnown RBP23.33■■□□□ 1.32
SMPD4-220ENST00000491319 MYOM2P54296 1465 aa23.32■■□□□ 1.32
SMPD4-220ENST00000491319 TMEM132EQ6IEE7 984 aa23.32■■□□□ 1.32
SMPD4-220ENST00000491319 COL22A1Q8NFW1 1626 aaPredicted RBP23.32■■□□□ 1.32
SMPD4-220ENST00000491319 AFF2P51816 1311 aa23.32■■□□□ 1.32
SMPD4-220ENST00000491319 SOS2Q07890 1332 aaPredicted RBP23.32■■□□□ 1.32
SMPD4-220ENST00000491319 NRXN1Q9ULB1 1477 aa23.31■■□□□ 1.32
SMPD4-220ENST00000491319 PLEKHH1Q9ULM0 1364 aa23.31■■□□□ 1.32
SMPD4-220ENST00000491319 RGPD8O14715 1765 aaPredicted RBP23.31■■□□□ 1.32
SMPD4-220ENST00000491319 YTHDC2Q9H6S0 1430 aaKnown RBP23.31■■□□□ 1.32
SMPD4-220ENST00000491319 ABCC11Q96J66 1382 aa23.3■■□□□ 1.32
SMPD4-220ENST00000491319 WAPLQ7Z5K2 1190 aa23.3■■□□□ 1.32
SMPD4-220ENST00000491319 MARF1Q9Y4F3 1742 aaKnown RBP23.28■■□□□ 1.32
SMPD4-220ENST00000491319 C8orf37Q96NL8 207 aa23.27■■□□□ 1.32
SMPD4-220ENST00000491319 PXDNQ92626 1479 aa23.27■■□□□ 1.32
SMPD4-220ENST00000491319 KIF1AQ12756 1690 aa23.25■■□□□ 1.31
SMPD4-220ENST00000491319 ESCO1Q5FWF5 840 aa23.25■■□□□ 1.31
SMPD4-220ENST00000491319 CDK12Q9NYV4 1490 aaPredicted RBP23.24■■□□□ 1.31
SMPD4-220ENST00000491319 RXRBP28702 533 aa23.24■■□□□ 1.31
SMPD4-220ENST00000491319 NUTM2FA1L443 756 aa23.23■■□□□ 1.31
SMPD4-220ENST00000491319 ADAMTS2O95450 1211 aa23.23■■□□□ 1.31
SMPD4-220ENST00000491319 C14orf93Q9H972 538 aaKnown RBP23.23■■□□□ 1.31
SMPD4-220ENST00000491319 NPHP3Q7Z494 1330 aa23.23■■□□□ 1.31
SMPD4-220ENST00000491319 CFAP70Q5T0N1 1121 aa23.21■■□□□ 1.31
SMPD4-220ENST00000491319 XPCQ01831 940 aaPredicted RBP23.2■■□□□ 1.3
SMPD4-220ENST00000491319 RGS12O14924 1447 aa23.18■■□□□ 1.3
SMPD4-220ENST00000491319 DHX57Q6P158 1386 aaKnown RBP23.18■■□□□ 1.3
SMPD4-220ENST00000491319 FOXO3O43524 673 aa23.18■■□□□ 1.3
SMPD4-220ENST00000491319 ADGRB1O14514 1584 aa23.18■■□□□ 1.3
SMPD4-220ENST00000491319 DLC1Q96QB1 1528 aa23.18■■□□□ 1.3
SMPD4-220ENST00000491319 NGLY1Q96IV0 654 aa23.17■■□□□ 1.3
SMPD4-220ENST00000491319 QTRT2Q9H974 415 aaKnown RBP23.16■■□□□ 1.3
SMPD4-220ENST00000491319 USP32Q8NFA0 1604 aa23.15■■□□□ 1.3
SMPD4-220ENST00000491319 ADGRB2O60241 1585 aa23.15■■□□□ 1.3
SMPD4-220ENST00000491319 SIRT1Q96EB6 747 aa23.15■■□□□ 1.3
SMPD4-220ENST00000491319 UPF1Q92900 1129 aaKnown RBP eCLIP23.14■■□□□ 1.29
SMPD4-220ENST00000491319 RBM6P78332 1123 aaKnown RBP23.13■■□□□ 1.29
SMPD4-220ENST00000491319 SAFB2Q14151 953 aaKnown RBP eCLIP23.12■■□□□ 1.29
SMPD4-220ENST00000491319 PRAM1Q96QH2 718 aa23.12■■□□□ 1.29
SMPD4-220ENST00000491319 ABCA3Q99758 1704 aa23.12■■□□□ 1.29
SMPD4-220ENST00000491319 USP21Q9UK80 565 aa23.11■■□□□ 1.29
SMPD4-220ENST00000491319 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.11■■□□□ 1.29
SMPD4-220ENST00000491319 ARHGEF28Q8N1W1 1705 aaKnown RBP23.1■■□□□ 1.29
SMPD4-220ENST00000491319 ATRNO75882 1429 aa23.08■■□□□ 1.29
SMPD4-220ENST00000491319 FNBP4Q8N3X1 1017 aaPredicted RBP23.08■■□□□ 1.29
SMPD4-220ENST00000491319 KDM2AQ9Y2K7 1162 aa23.08■■□□□ 1.29
SMPD4-220ENST00000491319 SPATA31A3Q5VYP0 1347 aa23.08■■□□□ 1.28
SMPD4-220ENST00000491319 DCAF11Q8TEB1 546 aa23.07■■□□□ 1.28
SMPD4-220ENST00000491319 HRCP23327 699 aa23.06■■□□□ 1.28
SMPD4-220ENST00000491319 POGKQ9P215 609 aa23.06■■□□□ 1.28
SMPD4-220ENST00000491319 PHF8Q9UPP1 1060 aa23.06■■□□□ 1.28
SMPD4-220ENST00000491319 TNS3Q68CZ2 1445 aa23.06■■□□□ 1.28
SMPD4-220ENST00000491319 BCL9LQ86UU0 1499 aa23.05■■□□□ 1.28
SMPD4-220ENST00000491319 TRPC5Q9UL62 973 aaPredicted RBP23.05■■□□□ 1.28
SMPD4-220ENST00000491319 TRPM3Q9HCF6 1732 aaPredicted RBP23.05■■□□□ 1.28
SMPD4-220ENST00000491319 KRT28Q7Z3Y7 464 aa23.04■■□□□ 1.28
SMPD4-220ENST00000491319 TRAK1Q9UPV9 953 aa23.04■■□□□ 1.28
SMPD4-220ENST00000491319 ANKARQ7Z5J8 1434 aa23.04■■□□□ 1.28
SMPD4-220ENST00000491319 PLCH1Q4KWH8 1693 aa23.03■■□□□ 1.28
SMPD4-220ENST00000491319 HIRIP3Q9BW71 556 aaPredicted RBP23.01■■□□□ 1.27
SMPD4-220ENST00000491319 ITSN1Q15811 1721 aa23.01■■□□□ 1.27
SMPD4-220ENST00000491319 TULP4Q9NRJ4 1543 aa23.01■■□□□ 1.27
SMPD4-220ENST00000491319 ALS2Q96Q42 1657 aa23■■□□□ 1.27
SMPD4-220ENST00000491319 KIAA1210Q9ULL0 1709 aa22.99■■□□□ 1.27
SMPD4-220ENST00000491319 SLIT2O94813 1529 aa22.99■■□□□ 1.27
SMPD4-220ENST00000491319 MINK1Q8N4C8 1332 aaPredicted RBP22.99■■□□□ 1.27
SMPD4-220ENST00000491319 NWD2Q9ULI1 1742 aa22.99■■□□□ 1.27
SMPD4-220ENST00000491319 GLI3P10071 1580 aa22.98■■□□□ 1.27
SMPD4-220ENST00000491319 PMFBP1Q8TBY8 1022 aa22.98■■□□□ 1.27
SMPD4-220ENST00000491319 SBNO1A3KN83 1393 aa22.98■■□□□ 1.27
SMPD4-220ENST00000491319 PSME1Q06323 249 aa22.97■■□□□ 1.27
SMPD4-220ENST00000491319 STAC3Q96MF2 364 aa22.97■■□□□ 1.27
SMPD4-220ENST00000491319 BRWD3Q6RI45 1802 aa22.96■■□□□ 1.27
SMPD4-220ENST00000491319 PRR36Q9H6K5 1346 aa22.96■■□□□ 1.27
SMPD4-220ENST00000491319 PLEKHG5O94827 1062 aa22.95■■□□□ 1.26
SMPD4-220ENST00000491319 EIF3AQ14152 1382 aaKnown RBP22.95■■□□□ 1.26
SMPD4-220ENST00000491319 ATAD2Q6PL18 1390 aa22.95■■□□□ 1.26
SMPD4-220ENST00000491319 CABLES1Q8TDN4 633 aa22.95■■□□□ 1.26
SMPD4-220ENST00000491319 CRYBG1Q9Y4K1 1723 aa22.95■■□□□ 1.26
SMPD4-220ENST00000491319 ARHGEF10O15013 1369 aa22.94■■□□□ 1.26
SMPD4-220ENST00000491319 RALGAPBQ86X10 1494 aa22.93■■□□□ 1.26
SMPD4-220ENST00000491319 HAP1P54257 671 aaPredicted RBP22.93■■□□□ 1.26
SMPD4-220ENST00000491319 LMOD2Q6P5Q4 547 aa22.93■■□□□ 1.26
SMPD4-220ENST00000491319 EP400Q96L91 3159 aa22.92■■□□□ 1.26
SMPD4-220ENST00000491319 NRAPQ86VF7 1730 aa22.92■■□□□ 1.26
SMPD4-220ENST00000491319 UNC5CLQ8IV45 518 aa22.92■■□□□ 1.26
SMPD4-220ENST00000491319 GJD4Q96KN9 370 aaPredicted RBP22.92■■□□□ 1.26
SMPD4-220ENST00000491319 TOPAZ1Q8N9V7 1692 aa22.92■■□□□ 1.26
SMPD4-220ENST00000491319 ATP7BP35670 1465 aa22.92■■□□□ 1.26
SMPD4-220ENST00000491319 WASLO00401 505 aaPredicted RBP22.91■■□□□ 1.26
SMPD4-220ENST00000491319 GPRASP1Q5JY77 1395 aa22.88■■□□□ 1.25
SMPD4-220ENST00000491319 COL14A1Q05707 1796 aaKnown RBP22.86■■□□□ 1.25
SMPD4-220ENST00000491319 PHRF1Q9P1Y6 1649 aaKnown RBP22.84■■□□□ 1.25
SMPD4-220ENST00000491319 QRICH2Q9H0J4 1663 aa22.84■■□□□ 1.25
SMPD4-220ENST00000491319 NGDNQ8NEJ9 315 aaKnown RBP22.83■■□□□ 1.25
SMPD4-220ENST00000491319 VPS72Q15906 364 aa22.81■■□□□ 1.24
SMPD4-220ENST00000491319 NBPF1Q3BBV0 1214 aa22.81■■□□□ 1.24
SMPD4-220ENST00000491319 NUDT16Q96DE0 195 aaKnown RBP22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms