RNA–Protein interactions for RNA: ENST00000491142.1

HPS4-215, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 486 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-215ENST00000491142 NRXN3Q9Y4C0 1643 aa12.93□□□□□ -0.34
HPS4-215ENST00000491142 XRN1Q8IZH2 1706 aaKnown RBP12.93□□□□□ -0.34
HPS4-215ENST00000491142 NUP155O75694 1391 aa12.93□□□□□ -0.34
HPS4-215ENST00000491142 ZNF326Q5BKZ1 582 aaKnown RBP12.91□□□□□ -0.34
HPS4-215ENST00000491142 ZNF219Q9P2Y4 722 aaPredicted RBP12.91□□□□□ -0.34
HPS4-215ENST00000491142 IQGAP3Q86VI3 1631 aa12.91□□□□□ -0.34
HPS4-215ENST00000491142 SETBP1Q9Y6X0 1596 aa12.9□□□□□ -0.34
HPS4-215ENST00000491142 ADGRL3Q9HAR2 1447 aa12.9□□□□□ -0.34
HPS4-215ENST00000491142 EP400Q96L91 3159 aa12.9□□□□□ -0.34
HPS4-215ENST00000491142 USP21Q9UK80 565 aa12.89□□□□□ -0.35
HPS4-215ENST00000491142 ZBTB22O15209 634 aa12.88□□□□□ -0.35
HPS4-215ENST00000491142 ORAI2Q96SN7 254 aa12.88□□□□□ -0.35
HPS4-215ENST00000491142 ROCK1Q13464 1354 aa12.88□□□□□ -0.35
HPS4-215ENST00000491142 ATAD2Q6PL18 1390 aa12.88□□□□□ -0.35
HPS4-215ENST00000491142 C1orf167Q5SNV9 1468 aa12.88□□□□□ -0.35
HPS4-215ENST00000491142 ITGAEP38570 1179 aa12.87□□□□□ -0.35
HPS4-215ENST00000491142 TRPC5Q9UL62 973 aaPredicted RBP12.87□□□□□ -0.35
HPS4-215ENST00000491142 NALCNQ8IZF0 1738 aa12.87□□□□□ -0.35
HPS4-215ENST00000491142 SOS2Q07890 1332 aaPredicted RBP12.87□□□□□ -0.35
HPS4-215ENST00000491142 ABCB7O75027 752 aa12.86□□□□□ -0.35
HPS4-215ENST00000491142 FNBP4Q8N3X1 1017 aaPredicted RBP12.86□□□□□ -0.35
HPS4-215ENST00000491142 ZRANB1Q9UGI0 708 aa12.86□□□□□ -0.35
HPS4-215ENST00000491142 ROBO2Q9HCK4 1378 aa12.83□□□□□ -0.36
HPS4-215ENST00000491142 ATRNO75882 1429 aa12.83□□□□□ -0.36
HPS4-215ENST00000491142 NEXMIFQ5QGS0 1516 aa12.83□□□□□ -0.36
HPS4-215ENST00000491142 SPHKAPQ2M3C7 1700 aa12.82□□□□□ -0.36
HPS4-215ENST00000491142 PTCH1Q13635 1447 aa12.82□□□□□ -0.36
HPS4-215ENST00000491142 LAMC1P11047 1609 aa12.82□□□□□ -0.36
HPS4-215ENST00000491142 CLTCL1P53675 1640 aa12.8□□□□□ -0.36
HPS4-215ENST00000491142 BCL9LQ86UU0 1499 aa12.79□□□□□ -0.36
HPS4-215ENST00000491142 CCDC125Q86Z20 511 aa12.79□□□□□ -0.36
HPS4-215ENST00000491142 XPCQ01831 940 aaPredicted RBP12.78□□□□□ -0.36
HPS4-215ENST00000491142 ESCO1Q5FWF5 840 aa12.78□□□□□ -0.36
HPS4-215ENST00000491142 GJD4Q96KN9 370 aaPredicted RBP12.78□□□□□ -0.36
HPS4-215ENST00000491142 MYOM2P54296 1465 aa12.78□□□□□ -0.36
HPS4-215ENST00000491142 COL22A1Q8NFW1 1626 aaPredicted RBP12.77□□□□□ -0.36
HPS4-215ENST00000491142 VGFO15240 615 aaPredicted RBP12.77□□□□□ -0.37
HPS4-215ENST00000491142 FOXO3O43524 673 aa12.76□□□□□ -0.37
HPS4-215ENST00000491142 NPHP3Q7Z494 1330 aa12.76□□□□□ -0.37
HPS4-215ENST00000491142 HFM1A2PYH4 1435 aa12.75□□□□□ -0.37
HPS4-215ENST00000491142 PXDNQ92626 1479 aa12.75□□□□□ -0.37
HPS4-215ENST00000491142 RRBP1Q9P2E9 1410 aaKnown RBP12.75□□□□□ -0.37
HPS4-215ENST00000491142 PRAG1Q86YV5 1406 aa12.74□□□□□ -0.37
HPS4-215ENST00000491142 NUTM2FA1L443 756 aa12.74□□□□□ -0.37
HPS4-215ENST00000491142 ATF5Q9Y2D1 282 aaPredicted RBP12.74□□□□□ -0.37
HPS4-215ENST00000491142 DEFB132Q7Z7B7 95 aa12.73□□□□□ -0.37
HPS4-215ENST00000491142 UNC5CLQ8IV45 518 aa12.73□□□□□ -0.37
HPS4-215ENST00000491142 KIF1BO60333 1816 aa12.73□□□□□ -0.37
HPS4-215ENST00000491142 RALGAPBQ86X10 1494 aa12.72□□□□□ -0.37
HPS4-215ENST00000491142 BLMP54132 1417 aaPredicted RBP12.71□□□□□ -0.37
HPS4-215ENST00000491142 RPGRIP1LQ68CZ1 1315 aa12.71□□□□□ -0.37
HPS4-215ENST00000491142 WAPLQ7Z5K2 1190 aa12.71□□□□□ -0.37
HPS4-215ENST00000491142 GLI3P10071 1580 aa12.7□□□□□ -0.38
HPS4-215ENST00000491142 CCER1Q8TC90 406 aaPredicted RBP12.7□□□□□ -0.38
HPS4-215ENST00000491142 STK26Q9P289 416 aa12.7□□□□□ -0.38
HPS4-215ENST00000491142 MARF1Q9Y4F3 1742 aaKnown RBP12.7□□□□□ -0.38
HPS4-215ENST00000491142 LRPPRCP42704 1394 aaKnown RBP12.69□□□□□ -0.38
HPS4-215ENST00000491142 CDC42BPGQ6DT37 1551 aa12.69□□□□□ -0.38
HPS4-215ENST00000491142 SLIT2O94813 1529 aa12.69□□□□□ -0.38
HPS4-215ENST00000491142 NAIPQ13075 1403 aa12.69□□□□□ -0.38
HPS4-215ENST00000491142 SPATA31A3Q5VYP0 1347 aa12.68□□□□□ -0.38
HPS4-215ENST00000491142 POLA2Q14181 598 aa12.68□□□□□ -0.38
HPS4-215ENST00000491142 SEPT12Q8IYM1 358 aa12.68□□□□□ -0.38
HPS4-215ENST00000491142 ADGRF5Q8IZF2 1346 aa12.67□□□□□ -0.38
HPS4-215ENST00000491142 SF3B2Q13435 895 aaKnown RBP12.67□□□□□ -0.38
HPS4-215ENST00000491142 KRT28Q7Z3Y7 464 aa12.67□□□□□ -0.38
HPS4-215ENST00000491142 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.67□□□□□ -0.38
HPS4-215ENST00000491142 PLEKHH1Q9ULM0 1364 aa12.67□□□□□ -0.38
HPS4-215ENST00000491142 PLEKHG5O94827 1062 aa12.66□□□□□ -0.38
HPS4-215ENST00000491142 TMEM132EQ6IEE7 984 aa12.66□□□□□ -0.38
HPS4-215ENST00000491142 CABLES1Q8TDN4 633 aa12.66□□□□□ -0.38
HPS4-215ENST00000491142 PPLO60437 1756 aa12.66□□□□□ -0.38
HPS4-215ENST00000491142 BRWD3Q6RI45 1802 aa12.65□□□□□ -0.38
HPS4-215ENST00000491142 VPS72Q15906 364 aa12.65□□□□□ -0.38
HPS4-215ENST00000491142 PSDA5PKW4 1024 aaPredicted RBP12.64□□□□□ -0.39
HPS4-215ENST00000491142 ONECUT3O60422 494 aaPredicted RBP12.64□□□□□ -0.39
HPS4-215ENST00000491142 HAP1P54257 671 aaPredicted RBP12.64□□□□□ -0.39
HPS4-215ENST00000491142 RGL3Q3MIN7 710 aa12.64□□□□□ -0.39
HPS4-215ENST00000491142 KRT27Q7Z3Y8 459 aa12.64□□□□□ -0.39
HPS4-215ENST00000491142 CCDC9Q9Y3X0 531 aaKnown RBP12.64□□□□□ -0.39
HPS4-215ENST00000491142 TECPR2O15040 1411 aa12.63□□□□□ -0.39
HPS4-215ENST00000491142 USP32Q8NFA0 1604 aa12.63□□□□□ -0.39
HPS4-215ENST00000491142 ABCC11Q96J66 1382 aa12.63□□□□□ -0.39
HPS4-215ENST00000491142 CCDC144AA2RUR9 1427 aa12.62□□□□□ -0.39
HPS4-215ENST00000491142 LMOD2Q6P5Q4 547 aa12.61□□□□□ -0.39
HPS4-215ENST00000491142 PHF8Q9UPP1 1060 aa12.61□□□□□ -0.39
HPS4-215ENST00000491142 LRP5O75197 1615 aa12.61□□□□□ -0.39
HPS4-215ENST00000491142 FMN2Q9NZ56 1722 aa12.6□□□□□ -0.39
HPS4-215ENST00000491142 FAM83GA6ND36 823 aa12.6□□□□□ -0.39
HPS4-215ENST00000491142 PSME1Q06323 249 aa12.6□□□□□ -0.39
HPS4-215ENST00000491142 TNS3Q68CZ2 1445 aa12.6□□□□□ -0.39
HPS4-215ENST00000491142 A0A0G2JS52 829 aa12.59□□□□□ -0.39
HPS4-215ENST00000491142 BAG6P46379 1132 aa12.59□□□□□ -0.39
HPS4-215ENST00000491142 MYT1Q01538 1121 aa12.59□□□□□ -0.39
HPS4-215ENST00000491142 KIF1AQ12756 1690 aa12.58□□□□□ -0.4
HPS4-215ENST00000491142 EN1Q05925 392 aaPredicted RBP12.58□□□□□ -0.4
HPS4-215ENST00000491142 FAM98CQ17RN3 349 aaKnown RBP12.58□□□□□ -0.4
HPS4-215ENST00000491142 FAM182BQ5T319 152 aa12.58□□□□□ -0.4
HPS4-215ENST00000491142 YTHDC2Q9H6S0 1430 aaKnown RBP12.58□□□□□ -0.4
HPS4-215ENST00000491142 PLCH1Q4KWH8 1693 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms