RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 NALCNQ8IZF0 1738 aa24.91■■□□□ 1.58
MDC1-206ENST00000489540 C1orf167Q5SNV9 1468 aa24.9■■□□□ 1.58
MDC1-206ENST00000489540 SAFB2Q14151 953 aaKnown RBP eCLIP24.89■■□□□ 1.58
MDC1-206ENST00000489540 NBPF1Q3BBV0 1214 aa24.89■■□□□ 1.58
MDC1-206ENST00000489540 TONSLQ96HA7 1378 aa24.88■■□□□ 1.57
MDC1-206ENST00000489540 ORAI2Q96SN7 254 aa24.86■■□□□ 1.57
MDC1-206ENST00000489540 CDC42BPGQ6DT37 1551 aa24.85■■□□□ 1.57
MDC1-206ENST00000489540 CLSPNQ9HAW4 1339 aa24.84■■□□□ 1.57
MDC1-206ENST00000489540 ESCO1Q5FWF5 840 aa24.84■■□□□ 1.57
MDC1-206ENST00000489540 KIAA1210Q9ULL0 1709 aa24.83■■□□□ 1.57
MDC1-206ENST00000489540 NUTM2FA1L443 756 aa24.82■■□□□ 1.56
MDC1-206ENST00000489540 MINK1Q8N4C8 1332 aaPredicted RBP24.8■■□□□ 1.56
MDC1-206ENST00000489540 AHDC1Q5TGY3 1603 aaPredicted RBP24.8■■□□□ 1.56
MDC1-206ENST00000489540 JCADQ9P266 1359 aa24.8■■□□□ 1.56
MDC1-206ENST00000489540 NBPF8Q3BBV2 869 aa24.79■■□□□ 1.56
MDC1-206ENST00000489540 LRRC59Q96AG4 307 aaKnown RBP24.78■■□□□ 1.56
MDC1-206ENST00000489540 HIRIP3Q9BW71 556 aaPredicted RBP24.78■■□□□ 1.56
MDC1-206ENST00000489540 PHLPP1O60346 1717 aa24.77■■□□□ 1.56
MDC1-206ENST00000489540 WASLO00401 505 aaPredicted RBP24.77■■□□□ 1.56
MDC1-206ENST00000489540 DDX17Q92841 729 aaKnown RBP24.77■■□□□ 1.56
MDC1-206ENST00000489540 ROCK2O75116 1388 aaKnown RBP24.77■■□□□ 1.56
MDC1-206ENST00000489540 DISP3Q9P2K9 1392 aa24.77■■□□□ 1.56
MDC1-206ENST00000489540 TIMELESSQ9UNS1 1208 aa24.75■■□□□ 1.55
MDC1-206ENST00000489540 NPHP3Q7Z494 1330 aa24.74■■□□□ 1.55
MDC1-206ENST00000489540 EIF3AQ14152 1382 aaKnown RBP24.74■■□□□ 1.55
MDC1-206ENST00000489540 SOS2Q07890 1332 aaPredicted RBP24.74■■□□□ 1.55
MDC1-206ENST00000489540 FOXO3O43524 673 aa24.73■■□□□ 1.55
MDC1-206ENST00000489540 CCER1Q8TC90 406 aaPredicted RBP24.73■■□□□ 1.55
MDC1-206ENST00000489540 CENPJQ9HC77 1338 aaPredicted RBP24.73■■□□□ 1.55
MDC1-206ENST00000489540 COL16A1Q07092 1604 aaPredicted RBP24.73■■□□□ 1.55
MDC1-206ENST00000489540 ANKARQ7Z5J8 1434 aa24.71■■□□□ 1.55
MDC1-206ENST00000489540 PHF8Q9UPP1 1060 aa24.71■■□□□ 1.55
MDC1-206ENST00000489540 SPATA31A6Q5VVP1 1343 aa24.71■■□□□ 1.55
MDC1-206ENST00000489540 ADGRB2O60241 1585 aa24.71■■□□□ 1.55
MDC1-206ENST00000489540 GPRASP1Q5JY77 1395 aa24.7■■□□□ 1.54
MDC1-206ENST00000489540 FMN2Q9NZ56 1722 aa24.69■■□□□ 1.54
MDC1-206ENST00000489540 CDK19Q9BWU1 502 aa24.69■■□□□ 1.54
MDC1-206ENST00000489540 CARD11Q9BXL7 1154 aa24.69■■□□□ 1.54
MDC1-206ENST00000489540 TRPM1Q7Z4N2 1603 aa24.68■■□□□ 1.54
MDC1-206ENST00000489540 ARHGEF28Q8N1W1 1705 aaKnown RBP24.68■■□□□ 1.54
MDC1-206ENST00000489540 NHSL1Q5SYE7 1610 aa24.68■■□□□ 1.54
MDC1-206ENST00000489540 MED1Q15648 1581 aaPredicted RBP24.67■■□□□ 1.54
MDC1-206ENST00000489540 PHF23Q9BUL5 403 aaPredicted RBP24.67■■□□□ 1.54
MDC1-206ENST00000489540 PSME1Q06323 249 aa24.64■■□□□ 1.54
MDC1-206ENST00000489540 NUDT16Q96DE0 195 aaKnown RBP24.64■■□□□ 1.54
MDC1-206ENST00000489540 PRR36Q9H6K5 1346 aa24.64■■□□□ 1.54
MDC1-206ENST00000489540 XPCQ01831 940 aaPredicted RBP24.63■■□□□ 1.53
MDC1-206ENST00000489540 KRT28Q7Z3Y7 464 aa24.63■■□□□ 1.53
MDC1-206ENST00000489540 PMFBP1Q8TBY8 1022 aa24.63■■□□□ 1.53
MDC1-206ENST00000489540 TULP4Q9NRJ4 1543 aa24.63■■□□□ 1.53
MDC1-206ENST00000489540 RALGAPBQ86X10 1494 aa24.63■■□□□ 1.53
MDC1-206ENST00000489540 PNPLA6Q8IY17 1366 aa24.62■■□□□ 1.53
MDC1-206ENST00000489540 CCDC61Q9Y6R9 512 aa24.61■■□□□ 1.53
MDC1-206ENST00000489540 NUTM2BA6NNL0 878 aaPredicted RBP24.6■■□□□ 1.53
MDC1-206ENST00000489540 NUTM2EB1AL46 878 aaPredicted RBP24.6■■□□□ 1.53
MDC1-206ENST00000489540 SRPK2P78362 688 aaKnown RBP24.6■■□□□ 1.53
MDC1-206ENST00000489540 NUTM2AQ8IVF1 878 aaPredicted RBP24.6■■□□□ 1.53
MDC1-206ENST00000489540 PXDNQ92626 1479 aa24.59■■□□□ 1.53
MDC1-206ENST00000489540 KIF1AQ12756 1690 aa24.59■■□□□ 1.53
MDC1-206ENST00000489540 EVC2Q86UK5 1308 aa24.58■■□□□ 1.53
MDC1-206ENST00000489540 MEX3CQ5U5Q3 659 aaKnown RBP24.58■■□□□ 1.53
MDC1-206ENST00000489540 NGDNQ8NEJ9 315 aaKnown RBP24.58■■□□□ 1.53
MDC1-206ENST00000489540 SHPRHQ149N8 1683 aa24.57■■□□□ 1.52
MDC1-206ENST00000489540 SPATA31A3Q5VYP0 1347 aa24.56■■□□□ 1.52
MDC1-206ENST00000489540 USP32Q8NFA0 1604 aa24.56■■□□□ 1.52
MDC1-206ENST00000489540 CABP2Q9NPB3 220 aa24.55■■□□□ 1.52
MDC1-206ENST00000489540 PLEKHG3A1L390 1219 aa24.54■■□□□ 1.52
MDC1-206ENST00000489540 SBNO1A3KN83 1393 aa24.54■■□□□ 1.52
MDC1-206ENST00000489540 ATP7BP35670 1465 aa24.54■■□□□ 1.52
MDC1-206ENST00000489540 RGS17Q9UGC6 210 aaPredicted RBP24.52■■□□□ 1.52
MDC1-206ENST00000489540 LRP6O75581 1613 aa24.51■■□□□ 1.51
MDC1-206ENST00000489540 SBNO2Q9Y2G9 1366 aa24.51■■□□□ 1.51
MDC1-206ENST00000489540 RGPD8O14715 1765 aaPredicted RBP24.51■■□□□ 1.51
MDC1-206ENST00000489540 SLC24A1O60721 1099 aa24.5■■□□□ 1.51
MDC1-206ENST00000489540 QRICH2Q9H0J4 1663 aa24.48■■□□□ 1.51
MDC1-206ENST00000489540 LMOD2Q6P5Q4 547 aa24.48■■□□□ 1.51
MDC1-206ENST00000489540 ILDR2Q71H61 639 aa24.48■■□□□ 1.51
MDC1-206ENST00000489540 ACEP12821 1306 aa24.48■■□□□ 1.51
MDC1-206ENST00000489540 POLR3AO14802 1390 aaPredicted RBP24.48■■□□□ 1.51
MDC1-206ENST00000489540 ARHGEF10O15013 1369 aa24.48■■□□□ 1.51
MDC1-206ENST00000489540 TNS3Q68CZ2 1445 aa24.47■■□□□ 1.51
MDC1-206ENST00000489540 ST20-MTHFSA0A0A6YYL1 179 aa24.46■■□□□ 1.51
MDC1-206ENST00000489540 ADAMTS2O95450 1211 aa24.46■■□□□ 1.51
MDC1-206ENST00000489540 ZNF772Q68DY9 489 aaPredicted RBP24.46■■□□□ 1.51
MDC1-206ENST00000489540 CABP1Q9NZU7 370 aa24.46■■□□□ 1.51
MDC1-206ENST00000489540 PPIP5K1Q6PFW1 1433 aa24.45■■□□□ 1.5
MDC1-206ENST00000489540 PAK3O75914 559 aaPredicted RBP24.44■■□□□ 1.5
MDC1-206ENST00000489540 C8orf37Q96NL8 207 aa24.44■■□□□ 1.5
MDC1-206ENST00000489540 NGLY1Q96IV0 654 aa24.43■■□□□ 1.5
MDC1-206ENST00000489540 PUS7Q96PZ0 661 aaKnown RBP24.43■■□□□ 1.5
MDC1-206ENST00000489540 ATAD2Q6PL18 1390 aa24.43■■□□□ 1.5
MDC1-206ENST00000489540 TESK2Q96S53 571 aa24.42■■□□□ 1.5
MDC1-206ENST00000489540 COL22A1Q8NFW1 1626 aaPredicted RBP24.42■■□□□ 1.5
MDC1-206ENST00000489540 ITSN1Q15811 1721 aa24.41■■□□□ 1.5
MDC1-206ENST00000489540 USP47Q96K76 1375 aa24.41■■□□□ 1.5
MDC1-206ENST00000489540 POTEAQ6S8J7 498 aa24.41■■□□□ 1.5
MDC1-206ENST00000489540 AFF2P51816 1311 aa24.4■■□□□ 1.5
MDC1-206ENST00000489540 HAP1P54257 671 aaPredicted RBP24.4■■□□□ 1.5
MDC1-206ENST00000489540 ZNF692Q9BU19 519 aaPredicted RBP24.39■■□□□ 1.5
MDC1-206ENST00000489540 BRD4O60885 1362 aaPredicted RBP24.38■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms