RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 WAPLQ7Z5K2 1190 aa33.83■■■■□ 3.01
COL9A3-213ENST00000489045 C14orf93Q9H972 538 aaKnown RBP33.83■■■■□ 3.01
COL9A3-213ENST00000489045 ORAI2Q96SN7 254 aa33.82■■■■□ 3
COL9A3-213ENST00000489045 PLEKHH1Q9ULM0 1364 aa33.81■■■■□ 3
COL9A3-213ENST00000489045 CFAP70Q5T0N1 1121 aa33.8■■■■□ 3
COL9A3-213ENST00000489045 MEX3CQ5U5Q3 659 aaKnown RBP33.8■■■■□ 3
COL9A3-213ENST00000489045 LRRC59Q96AG4 307 aaKnown RBP33.8■■■■□ 3
COL9A3-213ENST00000489045 FMN2Q9NZ56 1722 aa33.76■■■■□ 3
COL9A3-213ENST00000489045 DHX57Q6P158 1386 aaKnown RBP33.75■■■□□ 2.99
COL9A3-213ENST00000489045 PNPLA6Q8IY17 1366 aa33.75■■■□□ 2.99
COL9A3-213ENST00000489045 NUTM2BA6NNL0 878 aaPredicted RBP33.75■■■□□ 2.99
COL9A3-213ENST00000489045 NUTM2EB1AL46 878 aaPredicted RBP33.75■■■□□ 2.99
COL9A3-213ENST00000489045 NUTM2AQ8IVF1 878 aaPredicted RBP33.75■■■□□ 2.99
COL9A3-213ENST00000489045 SOS2Q07890 1332 aaPredicted RBP33.71■■■□□ 2.99
COL9A3-213ENST00000489045 ESCO1Q5FWF5 840 aa33.7■■■□□ 2.99
COL9A3-213ENST00000489045 SIRT1Q96EB6 747 aa33.7■■■□□ 2.99
COL9A3-213ENST00000489045 ADGRB1O14514 1584 aa33.69■■■□□ 2.98
COL9A3-213ENST00000489045 NUTM2FA1L443 756 aa33.68■■■□□ 2.98
COL9A3-213ENST00000489045 DCAF11Q8TEB1 546 aa33.68■■■□□ 2.98
COL9A3-213ENST00000489045 KDM2AQ9Y2K7 1162 aa33.68■■■□□ 2.98
COL9A3-213ENST00000489045 DLC1Q96QB1 1528 aa33.67■■■□□ 2.98
COL9A3-213ENST00000489045 RGPD8O14715 1765 aaPredicted RBP33.65■■■□□ 2.98
COL9A3-213ENST00000489045 PXDNQ92626 1479 aa33.64■■■□□ 2.98
COL9A3-213ENST00000489045 NPHP3Q7Z494 1330 aa33.64■■■□□ 2.98
COL9A3-213ENST00000489045 ZNF772Q68DY9 489 aaPredicted RBP33.64■■■□□ 2.98
COL9A3-213ENST00000489045 KIF1AQ12756 1690 aa33.64■■■□□ 2.98
COL9A3-213ENST00000489045 COL22A1Q8NFW1 1626 aaPredicted RBP33.63■■■□□ 2.97
COL9A3-213ENST00000489045 PRAM1Q96QH2 718 aa33.62■■■□□ 2.97
COL9A3-213ENST00000489045 STAC3Q96MF2 364 aa33.6■■■□□ 2.97
COL9A3-213ENST00000489045 SAFB2Q14151 953 aaKnown RBP eCLIP33.59■■■□□ 2.97
COL9A3-213ENST00000489045 FOXO3O43524 673 aa33.58■■■□□ 2.97
COL9A3-213ENST00000489045 AFF2P51816 1311 aa33.57■■■□□ 2.97
COL9A3-213ENST00000489045 ADGRB2O60241 1585 aa33.57■■■□□ 2.96
COL9A3-213ENST00000489045 XPCQ01831 940 aaPredicted RBP33.56■■■□□ 2.96
COL9A3-213ENST00000489045 POGKQ9P215 609 aa33.56■■■□□ 2.96
COL9A3-213ENST00000489045 C8orf37Q96NL8 207 aa33.55■■■□□ 2.96
COL9A3-213ENST00000489045 TRAK1Q9UPV9 953 aa33.54■■■□□ 2.96
COL9A3-213ENST00000489045 ADAMTS2O95450 1211 aa33.52■■■□□ 2.96
COL9A3-213ENST00000489045 ARHGEF28Q8N1W1 1705 aaKnown RBP33.52■■■□□ 2.96
COL9A3-213ENST00000489045 USP32Q8NFA0 1604 aa33.51■■■□□ 2.96
COL9A3-213ENST00000489045 MARF1Q9Y4F3 1742 aaKnown RBP33.49■■■□□ 2.95
COL9A3-213ENST00000489045 KIAA1210Q9ULL0 1709 aa33.48■■■□□ 2.95
COL9A3-213ENST00000489045 RXRBP28702 533 aa33.45■■■□□ 2.95
COL9A3-213ENST00000489045 PHF8Q9UPP1 1060 aa33.45■■■□□ 2.95
COL9A3-213ENST00000489045 ANKARQ7Z5J8 1434 aa33.45■■■□□ 2.94
COL9A3-213ENST00000489045 NGLY1Q96IV0 654 aa33.44■■■□□ 2.94
COL9A3-213ENST00000489045 HIRIP3Q9BW71 556 aaPredicted RBP33.43■■■□□ 2.94
COL9A3-213ENST00000489045 MINK1Q8N4C8 1332 aaPredicted RBP33.43■■■□□ 2.94
COL9A3-213ENST00000489045 KRT28Q7Z3Y7 464 aa33.41■■■□□ 2.94
COL9A3-213ENST00000489045 CDK12Q9NYV4 1490 aaPredicted RBP33.41■■■□□ 2.94
COL9A3-213ENST00000489045 SPATA31A3Q5VYP0 1347 aa33.4■■■□□ 2.94
COL9A3-213ENST00000489045 TULP4Q9NRJ4 1543 aa33.39■■■□□ 2.94
COL9A3-213ENST00000489045 QTRT2Q9H974 415 aaKnown RBP33.38■■■□□ 2.93
COL9A3-213ENST00000489045 TNS3Q68CZ2 1445 aa33.36■■■□□ 2.93
COL9A3-213ENST00000489045 EIF3AQ14152 1382 aaKnown RBP33.36■■■□□ 2.93
COL9A3-213ENST00000489045 PMFBP1Q8TBY8 1022 aa33.34■■■□□ 2.93
COL9A3-213ENST00000489045 WASLO00401 505 aaPredicted RBP33.33■■■□□ 2.93
COL9A3-213ENST00000489045 PSME1Q06323 249 aa33.33■■■□□ 2.93
COL9A3-213ENST00000489045 USP21Q9UK80 565 aa33.33■■■□□ 2.93
COL9A3-213ENST00000489045 PRR36Q9H6K5 1346 aa33.32■■■□□ 2.93
COL9A3-213ENST00000489045 RBM6P78332 1123 aaKnown RBP33.32■■■□□ 2.92
COL9A3-213ENST00000489045 ITSN1Q15811 1721 aa33.32■■■□□ 2.92
COL9A3-213ENST00000489045 FNBP4Q8N3X1 1017 aaPredicted RBP33.32■■■□□ 2.92
COL9A3-213ENST00000489045 ABCA3Q99758 1704 aa33.32■■■□□ 2.92
COL9A3-213ENST00000489045 TRPM3Q9HCF6 1732 aaPredicted RBP33.31■■■□□ 2.92
COL9A3-213ENST00000489045 RGS12O14924 1447 aa33.31■■■□□ 2.92
COL9A3-213ENST00000489045 SBNO1A3KN83 1393 aa33.31■■■□□ 2.92
COL9A3-213ENST00000489045 NBPF1Q3BBV0 1214 aa33.28■■■□□ 2.92
COL9A3-213ENST00000489045 TNKS1BP1Q9C0C2 1729 aaKnown RBP33.26■■■□□ 2.92
COL9A3-213ENST00000489045 TRPC5Q9UL62 973 aaPredicted RBP33.26■■■□□ 2.91
COL9A3-213ENST00000489045 ATRNO75882 1429 aa33.26■■■□□ 2.91
COL9A3-213ENST00000489045 ATP7BP35670 1465 aa33.25■■■□□ 2.91
COL9A3-213ENST00000489045 SIN3AQ96ST3 1273 aa33.25■■■□□ 2.91
COL9A3-213ENST00000489045 BCL9LQ86UU0 1499 aa33.25■■■□□ 2.91
COL9A3-213ENST00000489045 ARHGEF10O15013 1369 aa33.24■■■□□ 2.91
COL9A3-213ENST00000489045 ALS2Q96Q42 1657 aa33.24■■■□□ 2.91
COL9A3-213ENST00000489045 L3MBTL2Q969R5 705 aa33.24■■■□□ 2.91
COL9A3-213ENST00000489045 LMOD2Q6P5Q4 547 aa33.23■■■□□ 2.91
COL9A3-213ENST00000489045 TOPAZ1Q8N9V7 1692 aa33.21■■■□□ 2.91
COL9A3-213ENST00000489045 GPRASP1Q5JY77 1395 aa33.21■■■□□ 2.91
COL9A3-213ENST00000489045 PLEKHG5O94827 1062 aa33.2■■■□□ 2.91
COL9A3-213ENST00000489045 HAP1P54257 671 aaPredicted RBP33.2■■■□□ 2.91
COL9A3-213ENST00000489045 CABLES1Q8TDN4 633 aa33.2■■■□□ 2.91
COL9A3-213ENST00000489045 TRPM1Q7Z4N2 1603 aa33.2■■■□□ 2.9
COL9A3-213ENST00000489045 PLCH1Q4KWH8 1693 aa33.19■■■□□ 2.9
COL9A3-213ENST00000489045 SLIT2O94813 1529 aa33.18■■■□□ 2.9
COL9A3-213ENST00000489045 QRICH2Q9H0J4 1663 aa33.18■■■□□ 2.9
COL9A3-213ENST00000489045 NEUROD1Q13562 356 aa33.18■■■□□ 2.9
COL9A3-213ENST00000489045 UPF1Q92900 1129 aaKnown RBP eCLIP33.18■■■□□ 2.9
COL9A3-213ENST00000489045 NUDT16Q96DE0 195 aaKnown RBP33.17■■■□□ 2.9
COL9A3-213ENST00000489045 NGDNQ8NEJ9 315 aaKnown RBP33.16■■■□□ 2.9
COL9A3-213ENST00000489045 CDK19Q9BWU1 502 aa33.16■■■□□ 2.9
COL9A3-213ENST00000489045 NWD2Q9ULI1 1742 aa33.14■■■□□ 2.9
COL9A3-213ENST00000489045 CRYBG1Q9Y4K1 1723 aa33.14■■■□□ 2.89
COL9A3-213ENST00000489045 CENPJQ9HC77 1338 aaPredicted RBP33.11■■■□□ 2.89
COL9A3-213ENST00000489045 UNC5CLQ8IV45 518 aa33.1■■■□□ 2.89
COL9A3-213ENST00000489045 GLI3P10071 1580 aa33.09■■■□□ 2.89
COL9A3-213ENST00000489045 PAK3O75914 559 aaPredicted RBP33.07■■■□□ 2.88
COL9A3-213ENST00000489045 GJD4Q96KN9 370 aaPredicted RBP33.07■■■□□ 2.88
COL9A3-213ENST00000489045 RALGAPBQ86X10 1494 aa33.05■■■□□ 2.88
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms