RNA–Protein interactions for RNA: ENST00000488558.2

CUL4A-209, Transcript of cullin 4A, human

TSL 3 BASIC

Gene CUL4A, Length 1,111 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CUL4A-209	ENST00000488558	SIRT1	Q96EB6	747 aa		33.93	■■■■□ 3.02
CUL4A-209	ENST00000488558	FMN2	Q9NZ56	1722 aa		33.91	■■■■□ 3.02
CUL4A-209	ENST00000488558	DHX57	Q6P158	1386 aa	Known RBP	33.91	■■■■□ 3.02
CUL4A-209	ENST00000488558	POTEA	Q6S8J7	498 aa		33.91	■■■■□ 3.02
CUL4A-209	ENST00000488558	PLEKHH1	Q9ULM0	1364 aa		33.9	■■■■□ 3.02
CUL4A-209	ENST00000488558	WAPL	Q7Z5K2	1190 aa		33.9	■■■■□ 3.02
CUL4A-209	ENST00000488558	ORAI2	Q96SN7	254 aa		33.9	■■■■□ 3.02
CUL4A-209	ENST00000488558	PNPLA6	Q8IY17	1366 aa		33.89	■■■■□ 3.02
CUL4A-209	ENST00000488558	CFAP70	Q5T0N1	1121 aa		33.89	■■■■□ 3.02
CUL4A-209	ENST00000488558	DDX17	Q92841	729 aa	Known RBP	33.89	■■■■□ 3.02
CUL4A-209	ENST00000488558	DLC1	Q96QB1	1528 aa		33.89	■■■■□ 3.02
CUL4A-209	ENST00000488558	SOS2	Q07890	1332 aa	Predicted RBP	33.88	■■■■□ 3.01
CUL4A-209	ENST00000488558	STAC3	Q96MF2	364 aa		33.88	■■■■□ 3.01
CUL4A-209	ENST00000488558	ADGRB1	O14514	1584 aa		33.87	■■■■□ 3.01
CUL4A-209	ENST00000488558	MEX3C	Q5U5Q3	659 aa	Known RBP	33.87	■■■■□ 3.01
CUL4A-209	ENST00000488558	KIF1A	Q12756	1690 aa		33.82	■■■■□ 3
CUL4A-209	ENST00000488558	COL22A1	Q8NFW1	1626 aa	Predicted RBP	33.82	■■■■□ 3
CUL4A-209	ENST00000488558	NPHP3	Q7Z494	1330 aa		33.8	■■■■□ 3
CUL4A-209	ENST00000488558	ZNF772	Q68DY9	489 aa	Predicted RBP	33.8	■■■■□ 3
CUL4A-209	ENST00000488558	PXDN	Q92626	1479 aa		33.8	■■■■□ 3
CUL4A-209	ENST00000488558	ESCO1	Q5FWF5	840 aa		33.79	■■■■□ 3
CUL4A-209	ENST00000488558	DCAF11	Q8TEB1	546 aa		33.79	■■■■□ 3
CUL4A-209	ENST00000488558	NUTM2B	A6NNL0	878 aa	Predicted RBP	33.78	■■■■□ 3
CUL4A-209	ENST00000488558	NUTM2E	B1AL46	878 aa	Predicted RBP	33.78	■■■■□ 3
CUL4A-209	ENST00000488558	NUTM2A	Q8IVF1	878 aa	Predicted RBP	33.78	■■■■□ 3
CUL4A-209	ENST00000488558	ADGRB2	O60241	1585 aa		33.77	■■■■□ 3
CUL4A-209	ENST00000488558	PRAM1	Q96QH2	718 aa		33.73	■■■□□ 2.99
CUL4A-209	ENST00000488558	KDM2A	Q9Y2K7	1162 aa		33.72	■■■□□ 2.99
CUL4A-209	ENST00000488558	RGPD8	O14715	1765 aa	Predicted RBP	33.7	■■■□□ 2.98
CUL4A-209	ENST00000488558	KIAA1210	Q9ULL0	1709 aa		33.68	■■■□□ 2.98
CUL4A-209	ENST00000488558	NUTM2F	A1L443	756 aa		33.68	■■■□□ 2.98
CUL4A-209	ENST00000488558	FOXO3	O43524	673 aa		33.67	■■■□□ 2.98
CUL4A-209	ENST00000488558	POGK	Q9P215	609 aa		33.67	■■■□□ 2.98
CUL4A-209	ENST00000488558	AFF2	P51816	1311 aa		33.67	■■■□□ 2.98
CUL4A-209	ENST00000488558	ANKAR	Q7Z5J8	1434 aa		33.66	■■■□□ 2.98
CUL4A-209	ENST00000488558	ARHGEF28	Q8N1W1	1705 aa	Known RBP	33.65	■■■□□ 2.98
CUL4A-209	ENST00000488558	USP32	Q8NFA0	1604 aa		33.64	■■■□□ 2.98
CUL4A-209	ENST00000488558	CDK12	Q9NYV4	1490 aa	Predicted RBP	33.63	■■■□□ 2.97
CUL4A-209	ENST00000488558	SAFB2	Q14151	953 aa	Known RBP eCLIP	33.62	■■■□□ 2.97
CUL4A-209	ENST00000488558	C8orf37	Q96NL8	207 aa		33.62	■■■□□ 2.97
CUL4A-209	ENST00000488558	TRAK1	Q9UPV9	953 aa		33.62	■■■□□ 2.97
CUL4A-209	ENST00000488558	MARF1	Q9Y4F3	1742 aa	Known RBP	33.62	■■■□□ 2.97
CUL4A-209	ENST00000488558	EIF3A	Q14152	1382 aa	Known RBP	33.6	■■■□□ 2.97
CUL4A-209	ENST00000488558	XPC	Q01831	940 aa	Predicted RBP	33.58	■■■□□ 2.97
CUL4A-209	ENST00000488558	PHF8	Q9UPP1	1060 aa		33.58	■■■□□ 2.97
CUL4A-209	ENST00000488558	ADAMTS2	O95450	1211 aa		33.57	■■■□□ 2.96
CUL4A-209	ENST00000488558	RXRB	P28702	533 aa		33.57	■■■□□ 2.96
CUL4A-209	ENST00000488558	TULP4	Q9NRJ4	1543 aa		33.57	■■■□□ 2.96
CUL4A-209	ENST00000488558	SPATA31A3	Q5VYP0	1347 aa		33.54	■■■□□ 2.96
CUL4A-209	ENST00000488558	NGLY1	Q96IV0	654 aa		33.54	■■■□□ 2.96
CUL4A-209	ENST00000488558	KRT28	Q7Z3Y7	464 aa		33.52	■■■□□ 2.96
CUL4A-209	ENST00000488558	TNS3	Q68CZ2	1445 aa		33.52	■■■□□ 2.96
CUL4A-209	ENST00000488558	MINK1	Q8N4C8	1332 aa	Predicted RBP	33.51	■■■□□ 2.95
CUL4A-209	ENST00000488558	SBNO1	A3KN83	1393 aa		33.5	■■■□□ 2.95
CUL4A-209	ENST00000488558	PSME1	Q06323	249 aa		33.49	■■■□□ 2.95
CUL4A-209	ENST00000488558	FNBP4	Q8N3X1	1017 aa	Predicted RBP	33.49	■■■□□ 2.95
CUL4A-209	ENST00000488558	ITSN1	Q15811	1721 aa		33.48	■■■□□ 2.95
CUL4A-209	ENST00000488558	HIRIP3	Q9BW71	556 aa	Predicted RBP	33.48	■■■□□ 2.95
CUL4A-209	ENST00000488558	QTRT2	Q9H974	415 aa	Known RBP	33.48	■■■□□ 2.95
CUL4A-209	ENST00000488558	WASL	O00401	505 aa	Predicted RBP	33.47	■■■□□ 2.95
CUL4A-209	ENST00000488558	RBM6	P78332	1123 aa	Known RBP	33.47	■■■□□ 2.95
CUL4A-209	ENST00000488558	TRPM3	Q9HCF6	1732 aa	Predicted RBP	33.45	■■■□□ 2.95
CUL4A-209	ENST00000488558	ABCA3	Q99758	1704 aa		33.45	■■■□□ 2.94
CUL4A-209	ENST00000488558	USP21	Q9UK80	565 aa		33.44	■■■□□ 2.94
CUL4A-209	ENST00000488558	PRR36	Q9H6K5	1346 aa		33.44	■■■□□ 2.94
CUL4A-209	ENST00000488558	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	33.44	■■■□□ 2.94
CUL4A-209	ENST00000488558	ARHGEF10	O15013	1369 aa		33.43	■■■□□ 2.94
CUL4A-209	ENST00000488558	RGS12	O14924	1447 aa		33.42	■■■□□ 2.94
CUL4A-209	ENST00000488558	ATP7B	P35670	1465 aa		33.42	■■■□□ 2.94
CUL4A-209	ENST00000488558	ATRN	O75882	1429 aa		33.41	■■■□□ 2.94
CUL4A-209	ENST00000488558	PMFBP1	Q8TBY8	1022 aa		33.4	■■■□□ 2.94
CUL4A-209	ENST00000488558	TRPC5	Q9UL62	973 aa	Predicted RBP	33.4	■■■□□ 2.94
CUL4A-209	ENST00000488558	ALS2	Q96Q42	1657 aa		33.39	■■■□□ 2.94
CUL4A-209	ENST00000488558	BCL9L	Q86UU0	1499 aa		33.39	■■■□□ 2.94
CUL4A-209	ENST00000488558	TOPAZ1	Q8N9V7	1692 aa		33.37	■■■□□ 2.93
CUL4A-209	ENST00000488558	GPRASP1	Q5JY77	1395 aa		33.36	■■■□□ 2.93
CUL4A-209	ENST00000488558	NBPF1	Q3BBV0	1214 aa		33.36	■■■□□ 2.93
CUL4A-209	ENST00000488558	SLIT2	O94813	1529 aa		33.35	■■■□□ 2.93
CUL4A-209	ENST00000488558	L3MBTL2	Q969R5	705 aa		33.35	■■■□□ 2.93
CUL4A-209	ENST00000488558	TRPM1	Q7Z4N2	1603 aa		33.35	■■■□□ 2.93
CUL4A-209	ENST00000488558	NWD2	Q9ULI1	1742 aa		33.31	■■■□□ 2.92
CUL4A-209	ENST00000488558	NUDT16	Q96DE0	195 aa	Known RBP	33.3	■■■□□ 2.92
CUL4A-209	ENST00000488558	SIN3A	Q96ST3	1273 aa		33.3	■■■□□ 2.92
CUL4A-209	ENST00000488558	PLCH1	Q4KWH8	1693 aa		33.29	■■■□□ 2.92
CUL4A-209	ENST00000488558	QRICH2	Q9H0J4	1663 aa		33.29	■■■□□ 2.92
CUL4A-209	ENST00000488558	UPF1	Q92900	1129 aa	Known RBP eCLIP	33.29	■■■□□ 2.92
CUL4A-209	ENST00000488558	HAP1	P54257	671 aa	Predicted RBP	33.28	■■■□□ 2.92
CUL4A-209	ENST00000488558	CRYBG1	Q9Y4K1	1723 aa		33.28	■■■□□ 2.92
CUL4A-209	ENST00000488558	LMOD2	Q6P5Q4	547 aa		33.27	■■■□□ 2.92
CUL4A-209	ENST00000488558	NGDN	Q8NEJ9	315 aa	Known RBP	33.27	■■■□□ 2.92
CUL4A-209	ENST00000488558	CDK19	Q9BWU1	502 aa		33.27	■■■□□ 2.92
CUL4A-209	ENST00000488558	CENPJ	Q9HC77	1338 aa	Predicted RBP	33.26	■■■□□ 2.91
CUL4A-209	ENST00000488558	CABLES1	Q8TDN4	633 aa		33.25	■■■□□ 2.91
CUL4A-209	ENST00000488558	UNC5CL	Q8IV45	518 aa		33.24	■■■□□ 2.91
CUL4A-209	ENST00000488558	POLR3A	O14802	1390 aa	Predicted RBP	33.23	■■■□□ 2.91
CUL4A-209	ENST00000488558	NEUROD1	Q13562	356 aa		33.21	■■■□□ 2.91
CUL4A-209	ENST00000488558	CCDC61	Q9Y6R9	512 aa		33.21	■■■□□ 2.91
CUL4A-209	ENST00000488558	GLI3	P10071	1580 aa		33.21	■■■□□ 2.91
CUL4A-209	ENST00000488558	GJD4	Q96KN9	370 aa	Predicted RBP	33.2	■■■□□ 2.91
CUL4A-209	ENST00000488558	RALGAPB	Q86X10	1494 aa		33.18	■■■□□ 2.9

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