RNA–Protein interactions for RNA: ENST00000488186.5

C9orf3-219, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,211 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-219ENST00000488186 PRAM1Q96QH2 718 aa22.35■■□□□ 1.17
C9orf3-219ENST00000488186 PIP4K2BP78356 416 aa22.34■■□□□ 1.17
C9orf3-219ENST00000488186 SAFB2Q14151 953 aaKnown RBP eCLIP22.34■■□□□ 1.17
C9orf3-219ENST00000488186 CARD11Q9BXL7 1154 aa22.34■■□□□ 1.17
C9orf3-219ENST00000488186 NALCNQ8IZF0 1738 aa22.34■■□□□ 1.17
C9orf3-219ENST00000488186 SCAF1Q9H7N4 1312 aaKnown RBP22.31■■□□□ 1.16
C9orf3-219ENST00000488186 TRPM1Q7Z4N2 1603 aa22.3■■□□□ 1.16
C9orf3-219ENST00000488186 ROBO1Q9Y6N7 1651 aa22.29■■□□□ 1.16
C9orf3-219ENST00000488186 PLEKHH1Q9ULM0 1364 aa22.28■■□□□ 1.16
C9orf3-219ENST00000488186 CDC42BPGQ6DT37 1551 aa22.28■■□□□ 1.16
C9orf3-219ENST00000488186 MST1RQ04912 1400 aa22.27■■□□□ 1.16
C9orf3-219ENST00000488186 RALGAPBQ86X10 1494 aa22.27■■□□□ 1.16
C9orf3-219ENST00000488186 EIF3AQ14152 1382 aaKnown RBP22.25■■□□□ 1.15
C9orf3-219ENST00000488186 HSPA1LP34931 641 aa22.25■■□□□ 1.15
C9orf3-219ENST00000488186 MINK1Q8N4C8 1332 aaPredicted RBP22.25■■□□□ 1.15
C9orf3-219ENST00000488186 CENPJQ9HC77 1338 aaPredicted RBP22.24■■□□□ 1.15
C9orf3-219ENST00000488186 GPRASP1Q5JY77 1395 aa22.24■■□□□ 1.15
C9orf3-219ENST00000488186 HIRIP3Q9BW71 556 aaPredicted RBP22.23■■□□□ 1.15
C9orf3-219ENST00000488186 C1orf167Q5SNV9 1468 aa22.21■■□□□ 1.15
C9orf3-219ENST00000488186 ADGRB2O60241 1585 aa22.21■■□□□ 1.15
C9orf3-219ENST00000488186 AHDC1Q5TGY3 1603 aaPredicted RBP22.2■■□□□ 1.15
C9orf3-219ENST00000488186 ARHGEF28Q8N1W1 1705 aaKnown RBP22.2■■□□□ 1.14
C9orf3-219ENST00000488186 BRINP3Q76B58 766 aa22.19■■□□□ 1.14
C9orf3-219ENST00000488186 NUTM2FA1L443 756 aa22.18■■□□□ 1.14
C9orf3-219ENST00000488186 FMN2Q9NZ56 1722 aa22.17■■□□□ 1.14
C9orf3-219ENST00000488186 WASLO00401 505 aaPredicted RBP22.15■■□□□ 1.14
C9orf3-219ENST00000488186 NHSL1Q5SYE7 1610 aa22.15■■□□□ 1.14
C9orf3-219ENST00000488186 PHLPP1O60346 1717 aa22.14■■□□□ 1.14
C9orf3-219ENST00000488186 ESCO1Q5FWF5 840 aa22.13■■□□□ 1.13
C9orf3-219ENST00000488186 CDK19Q9BWU1 502 aa22.13■■□□□ 1.13
C9orf3-219ENST00000488186 COL16A1Q07092 1604 aaPredicted RBP22.13■■□□□ 1.13
C9orf3-219ENST00000488186 ST20-MTHFSA0A0A6YYL1 179 aa22.12■■□□□ 1.13
C9orf3-219ENST00000488186 ANKARQ7Z5J8 1434 aa22.12■■□□□ 1.13
C9orf3-219ENST00000488186 USP47Q96K76 1375 aa22.12■■□□□ 1.13
C9orf3-219ENST00000488186 EVC2Q86UK5 1308 aa22.11■■□□□ 1.13
C9orf3-219ENST00000488186 SLC24A1O60721 1099 aa22.11■■□□□ 1.13
C9orf3-219ENST00000488186 SRPK2P78362 688 aaKnown RBP22.11■■□□□ 1.13
C9orf3-219ENST00000488186 EIF4G2P78344 907 aaKnown RBP eCLIP22.09■■□□□ 1.13
C9orf3-219ENST00000488186 QRICH2Q9H0J4 1663 aa22.08■■□□□ 1.13
C9orf3-219ENST00000488186 ZEB1P37275 1124 aaPredicted RBP22.08■■□□□ 1.13
C9orf3-219ENST00000488186 ORAI2Q96SN7 254 aa22.08■■□□□ 1.13
C9orf3-219ENST00000488186 KIF1AQ12756 1690 aa22.07■■□□□ 1.12
C9orf3-219ENST00000488186 JCADQ9P266 1359 aa22.07■■□□□ 1.12
C9orf3-219ENST00000488186 NUDT16Q96DE0 195 aaKnown RBP22.06■■□□□ 1.12
C9orf3-219ENST00000488186 CABP2Q9NPB3 220 aa22.06■■□□□ 1.12
C9orf3-219ENST00000488186 SOS2Q07890 1332 aaPredicted RBP22.06■■□□□ 1.12
C9orf3-219ENST00000488186 RGPD8O14715 1765 aaPredicted RBP22.05■■□□□ 1.12
C9orf3-219ENST00000488186 LRRC59Q96AG4 307 aaKnown RBP22.05■■□□□ 1.12
C9orf3-219ENST00000488186 TULP4Q9NRJ4 1543 aa22.05■■□□□ 1.12
C9orf3-219ENST00000488186 NPHP3Q7Z494 1330 aa22.05■■□□□ 1.12
C9orf3-219ENST00000488186 PHF8Q9UPP1 1060 aa22.04■■□□□ 1.12
C9orf3-219ENST00000488186 SHPRHQ149N8 1683 aa22.04■■□□□ 1.12
C9orf3-219ENST00000488186 USP32Q8NFA0 1604 aa22.03■■□□□ 1.12
C9orf3-219ENST00000488186 SBNO2Q9Y2G9 1366 aa22.02■■□□□ 1.12
C9orf3-219ENST00000488186 HSPA5P11021 654 aaKnown RBP22.02■■□□□ 1.12
C9orf3-219ENST00000488186 TMF1P82094 1093 aa22.02■■□□□ 1.12
C9orf3-219ENST00000488186 PMFBP1Q8TBY8 1022 aa22.02■■□□□ 1.12
C9orf3-219ENST00000488186 CCDC61Q9Y6R9 512 aa22.01■■□□□ 1.11
C9orf3-219ENST00000488186 SPATA31A6Q5VVP1 1343 aa22.01■■□□□ 1.11
C9orf3-219ENST00000488186 FOXO3O43524 673 aa22■■□□□ 1.11
C9orf3-219ENST00000488186 ITSN1Q15811 1721 aa22■■□□□ 1.11
C9orf3-219ENST00000488186 NGDNQ8NEJ9 315 aaKnown RBP21.99■■□□□ 1.11
C9orf3-219ENST00000488186 TESK2Q96S53 571 aa21.99■■□□□ 1.11
C9orf3-219ENST00000488186 PRR36Q9H6K5 1346 aa21.99■■□□□ 1.11
C9orf3-219ENST00000488186 PXDNQ92626 1479 aa21.98■■□□□ 1.11
C9orf3-219ENST00000488186 PSME1Q06323 249 aa21.98■■□□□ 1.11
C9orf3-219ENST00000488186 CDCA8Q53HL2 280 aa21.98■■□□□ 1.11
C9orf3-219ENST00000488186 DDX17Q92841 729 aaKnown RBP21.98■■□□□ 1.11
C9orf3-219ENST00000488186 MED1Q15648 1581 aaPredicted RBP21.97■■□□□ 1.11
C9orf3-219ENST00000488186 ATP7BP35670 1465 aa21.96■■□□□ 1.11
C9orf3-219ENST00000488186 TMC1Q8TDI8 760 aa21.95■■□□□ 1.1
C9orf3-219ENST00000488186 CABP1Q9NZU7 370 aa21.95■■□□□ 1.1
C9orf3-219ENST00000488186 ATAD2Q6PL18 1390 aa21.95■■□□□ 1.1
C9orf3-219ENST00000488186 XPCQ01831 940 aaPredicted RBP21.94■■□□□ 1.1
C9orf3-219ENST00000488186 KRT28Q7Z3Y7 464 aa21.94■■□□□ 1.1
C9orf3-219ENST00000488186 TOPAZ1Q8N9V7 1692 aa21.93■■□□□ 1.1
C9orf3-219ENST00000488186 PUS7Q96PZ0 661 aaKnown RBP21.93■■□□□ 1.1
C9orf3-219ENST00000488186 COL22A1Q8NFW1 1626 aaPredicted RBP21.92■■□□□ 1.1
C9orf3-219ENST00000488186 PPIP5K1Q6PFW1 1433 aa21.92■■□□□ 1.1
C9orf3-219ENST00000488186 SBNO1A3KN83 1393 aa21.92■■□□□ 1.1
C9orf3-219ENST00000488186 PNPLA6Q8IY17 1366 aa21.92■■□□□ 1.1
C9orf3-219ENST00000488186 PLEKHG3A1L390 1219 aa21.92■■□□□ 1.1
C9orf3-219ENST00000488186 POLR3GLQ9BT43 218 aa21.92■■□□□ 1.1
C9orf3-219ENST00000488186 ACEP12821 1306 aa21.9■■□□□ 1.1
C9orf3-219ENST00000488186 POLR3AO14802 1390 aaPredicted RBP21.89■■□□□ 1.1
C9orf3-219ENST00000488186 DISP3Q9P2K9 1392 aa21.89■■□□□ 1.1
C9orf3-219ENST00000488186 SPATA31A3Q5VYP0 1347 aa21.89■■□□□ 1.1
C9orf3-219ENST00000488186 PAK3O75914 559 aaPredicted RBP21.88■■□□□ 1.09
C9orf3-219ENST00000488186 LMOD2Q6P5Q4 547 aa21.88■■□□□ 1.09
C9orf3-219ENST00000488186 BRD4O60885 1362 aaPredicted RBP21.87■■□□□ 1.09
C9orf3-219ENST00000488186 HDGFL2Q7Z4V5 671 aaPredicted RBP21.86■■□□□ 1.09
C9orf3-219ENST00000488186 ZNF692Q9BU19 519 aaPredicted RBP21.86■■□□□ 1.09
C9orf3-219ENST00000488186 SLC12A5Q9H2X9 1139 aa21.85■■□□□ 1.09
C9orf3-219ENST00000488186 TERF2IPQ9NYB0 399 aa21.85■■□□□ 1.09
C9orf3-219ENST00000488186 TRPM3Q9HCF6 1732 aaPredicted RBP21.85■■□□□ 1.09
C9orf3-219ENST00000488186 TNS3Q68CZ2 1445 aa21.84■■□□□ 1.09
C9orf3-219ENST00000488186 ARHGEF10O15013 1369 aa21.84■■□□□ 1.09
C9orf3-219ENST00000488186 LRP6O75581 1613 aa21.83■■□□□ 1.08
C9orf3-219ENST00000488186 ALS2Q96Q42 1657 aa21.82■■□□□ 1.08
C9orf3-219ENST00000488186 NINLQ9Y2I6 1382 aa21.81■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 91.5 ms