RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 WAPLQ7Z5K2 1190 aa18.15■□□□□ 0.5
SDC3-204ENST00000487984 PNPLA6Q8IY17 1366 aa18.15■□□□□ 0.5
SDC3-204ENST00000487984 MYOM2P54296 1465 aa18.14■□□□□ 0.5
SDC3-204ENST00000487984 CDC42BPGQ6DT37 1551 aa18.14■□□□□ 0.49
SDC3-204ENST00000487984 PLEKHH1Q9ULM0 1364 aa18.14■□□□□ 0.49
SDC3-204ENST00000487984 YTHDC2Q9H6S0 1430 aaKnown RBP18.14■□□□□ 0.49
SDC3-204ENST00000487984 C14orf93Q9H972 538 aaKnown RBP18.13■□□□□ 0.49
SDC3-204ENST00000487984 LAMC1P11047 1609 aa18.12■□□□□ 0.49
SDC3-204ENST00000487984 ZNF772Q68DY9 489 aaPredicted RBP18.12■□□□□ 0.49
SDC3-204ENST00000487984 SOS2Q07890 1332 aaPredicted RBP18.12■□□□□ 0.49
SDC3-204ENST00000487984 HRCP23327 699 aa18.11■□□□□ 0.49
SDC3-204ENST00000487984 CFAP70Q5T0N1 1121 aa18.11■□□□□ 0.49
SDC3-204ENST00000487984 KNDC1Q76NI1 1749 aa18.1■□□□□ 0.49
SDC3-204ENST00000487984 ESCO1Q5FWF5 840 aa18.1■□□□□ 0.49
SDC3-204ENST00000487984 DHX57Q6P158 1386 aaKnown RBP18.07■□□□□ 0.48
SDC3-204ENST00000487984 AFF2P51816 1311 aa18.07■□□□□ 0.48
SDC3-204ENST00000487984 NUTM2FA1L443 756 aa18.07■□□□□ 0.48
SDC3-204ENST00000487984 SIRT1Q96EB6 747 aa18.07■□□□□ 0.48
SDC3-204ENST00000487984 NPHP3Q7Z494 1330 aa18.06■□□□□ 0.48
SDC3-204ENST00000487984 C8orf37Q96NL8 207 aa18.06■□□□□ 0.48
SDC3-204ENST00000487984 PXDNQ92626 1479 aa18.04■□□□□ 0.48
SDC3-204ENST00000487984 FOXO3O43524 673 aa18.04■□□□□ 0.48
SDC3-204ENST00000487984 ADAMTS2O95450 1211 aa18.03■□□□□ 0.48
SDC3-204ENST00000487984 XPCQ01831 940 aaPredicted RBP18.03■□□□□ 0.48
SDC3-204ENST00000487984 PRAM1Q96QH2 718 aa18.03■□□□□ 0.48
SDC3-204ENST00000487984 ADGRB1O14514 1584 aa18.02■□□□□ 0.48
SDC3-204ENST00000487984 RXRBP28702 533 aa18.02■□□□□ 0.48
SDC3-204ENST00000487984 SAFB2Q14151 953 aaKnown RBP eCLIP18.02■□□□□ 0.48
SDC3-204ENST00000487984 DCAF11Q8TEB1 546 aa18.02■□□□□ 0.48
SDC3-204ENST00000487984 KDM2AQ9Y2K7 1162 aa18.02■□□□□ 0.48
SDC3-204ENST00000487984 FMN2Q9NZ56 1722 aa18.01■□□□□ 0.47
SDC3-204ENST00000487984 DLC1Q96QB1 1528 aa18■□□□□ 0.47
SDC3-204ENST00000487984 NGLY1Q96IV0 654 aa17.99■□□□□ 0.47
SDC3-204ENST00000487984 COL22A1Q8NFW1 1626 aaPredicted RBP17.98■□□□□ 0.47
SDC3-204ENST00000487984 STAC3Q96MF2 364 aa17.98■□□□□ 0.47
SDC3-204ENST00000487984 POGKQ9P215 609 aa17.98■□□□□ 0.47
SDC3-204ENST00000487984 CDK12Q9NYV4 1490 aaPredicted RBP17.97■□□□□ 0.47
SDC3-204ENST00000487984 QTRT2Q9H974 415 aaKnown RBP17.97■□□□□ 0.47
SDC3-204ENST00000487984 TRAK1Q9UPV9 953 aa17.97■□□□□ 0.47
SDC3-204ENST00000487984 KIF1AQ12756 1690 aa17.96■□□□□ 0.47
SDC3-204ENST00000487984 PHF8Q9UPP1 1060 aa17.95■□□□□ 0.46
SDC3-204ENST00000487984 RBM6P78332 1123 aaKnown RBP17.94■□□□□ 0.46
SDC3-204ENST00000487984 SPATA31A3Q5VYP0 1347 aa17.94■□□□□ 0.46
SDC3-204ENST00000487984 ADGRB2O60241 1585 aa17.93■□□□□ 0.46
SDC3-204ENST00000487984 KRT28Q7Z3Y7 464 aa17.93■□□□□ 0.46
SDC3-204ENST00000487984 FNBP4Q8N3X1 1017 aaPredicted RBP17.93■□□□□ 0.46
SDC3-204ENST00000487984 HIRIP3Q9BW71 556 aaPredicted RBP17.93■□□□□ 0.46
SDC3-204ENST00000487984 USP21Q9UK80 565 aa17.93■□□□□ 0.46
SDC3-204ENST00000487984 RGS12O14924 1447 aa17.92■□□□□ 0.46
SDC3-204ENST00000487984 ANKARQ7Z5J8 1434 aa17.92■□□□□ 0.46
SDC3-204ENST00000487984 MINK1Q8N4C8 1332 aaPredicted RBP17.92■□□□□ 0.46
SDC3-204ENST00000487984 UPF1Q92900 1129 aaKnown RBP eCLIP17.9■□□□□ 0.46
SDC3-204ENST00000487984 TRPC5Q9UL62 973 aaPredicted RBP17.9■□□□□ 0.46
SDC3-204ENST00000487984 TNS3Q68CZ2 1445 aa17.89■□□□□ 0.46
SDC3-204ENST00000487984 PSME1Q06323 249 aa17.89■□□□□ 0.45
SDC3-204ENST00000487984 USP32Q8NFA0 1604 aa17.89■□□□□ 0.45
SDC3-204ENST00000487984 ATRNO75882 1429 aa17.89■□□□□ 0.45
SDC3-204ENST00000487984 PMFBP1Q8TBY8 1022 aa17.88■□□□□ 0.45
SDC3-204ENST00000487984 PRR36Q9H6K5 1346 aa17.88■□□□□ 0.45
SDC3-204ENST00000487984 RGPD8O14715 1765 aaPredicted RBP17.88■□□□□ 0.45
SDC3-204ENST00000487984 SBNO1A3KN83 1393 aa17.88■□□□□ 0.45
SDC3-204ENST00000487984 BCL9LQ86UU0 1499 aa17.88■□□□□ 0.45
SDC3-204ENST00000487984 WASLO00401 505 aaPredicted RBP17.87■□□□□ 0.45
SDC3-204ENST00000487984 EIF3AQ14152 1382 aaKnown RBP17.87■□□□□ 0.45
SDC3-204ENST00000487984 TULP4Q9NRJ4 1543 aa17.87■□□□□ 0.45
SDC3-204ENST00000487984 ARHGEF10O15013 1369 aa17.84■□□□□ 0.45
SDC3-204ENST00000487984 LMOD2Q6P5Q4 547 aa17.84■□□□□ 0.45
SDC3-204ENST00000487984 CABLES1Q8TDN4 633 aa17.84■□□□□ 0.45
SDC3-204ENST00000487984 ARHGEF28Q8N1W1 1705 aaKnown RBP17.84■□□□□ 0.45
SDC3-204ENST00000487984 PLEKHG5O94827 1062 aa17.83■□□□□ 0.44
SDC3-204ENST00000487984 MARF1Q9Y4F3 1742 aaKnown RBP17.83■□□□□ 0.44
SDC3-204ENST00000487984 SLIT2O94813 1529 aa17.82■□□□□ 0.44
SDC3-204ENST00000487984 HAP1P54257 671 aaPredicted RBP17.82■□□□□ 0.44
SDC3-204ENST00000487984 NBPF1Q3BBV0 1214 aa17.82■□□□□ 0.44
SDC3-204ENST00000487984 GPRASP1Q5JY77 1395 aa17.81■□□□□ 0.44
SDC3-204ENST00000487984 UNC5CLQ8IV45 518 aa17.81■□□□□ 0.44
SDC3-204ENST00000487984 KIAA1210Q9ULL0 1709 aa17.8■□□□□ 0.44
SDC3-204ENST00000487984 ATP7BP35670 1465 aa17.8■□□□□ 0.44
SDC3-204ENST00000487984 GJD4Q96KN9 370 aaPredicted RBP17.79■□□□□ 0.44
SDC3-204ENST00000487984 TRPM3Q9HCF6 1732 aaPredicted RBP17.78■□□□□ 0.44
SDC3-204ENST00000487984 NGDNQ8NEJ9 315 aaKnown RBP17.78■□□□□ 0.44
SDC3-204ENST00000487984 NUDT16Q96DE0 195 aaKnown RBP17.78■□□□□ 0.44
SDC3-204ENST00000487984 CDK19Q9BWU1 502 aa17.78■□□□□ 0.44
SDC3-204ENST00000487984 L3MBTL2Q969R5 705 aa17.77■□□□□ 0.44
SDC3-204ENST00000487984 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.77■□□□□ 0.44
SDC3-204ENST00000487984 ATAD2Q6PL18 1390 aa17.77■□□□□ 0.43
SDC3-204ENST00000487984 RALGAPBQ86X10 1494 aa17.76■□□□□ 0.43
SDC3-204ENST00000487984 ABCA3Q99758 1704 aa17.76■□□□□ 0.43
SDC3-204ENST00000487984 SIN3AQ96ST3 1273 aa17.76■□□□□ 0.43
SDC3-204ENST00000487984 ALS2Q96Q42 1657 aa17.74■□□□□ 0.43
SDC3-204ENST00000487984 FAM83GA6ND36 823 aa17.74■□□□□ 0.43
SDC3-204ENST00000487984 PAK3O75914 559 aaPredicted RBP17.74■□□□□ 0.43
SDC3-204ENST00000487984 GLI3P10071 1580 aa17.74■□□□□ 0.43
SDC3-204ENST00000487984 VPS72Q15906 364 aa17.73■□□□□ 0.43
SDC3-204ENST00000487984 CENPJQ9HC77 1338 aaPredicted RBP17.72■□□□□ 0.43
SDC3-204ENST00000487984 NEUROD1Q13562 356 aa17.72■□□□□ 0.43
SDC3-204ENST00000487984 ITSN1Q15811 1721 aa17.72■□□□□ 0.43
SDC3-204ENST00000487984 PLCH1Q4KWH8 1693 aa17.71■□□□□ 0.43
SDC3-204ENST00000487984 POLR3AO14802 1390 aaPredicted RBP17.71■□□□□ 0.43
SDC3-204ENST00000487984 CCDC61Q9Y6R9 512 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms