RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 RRBP1Q9P2E9 1410 aaKnown RBP23.47■■□□□ 1.35
MCF2L-228ENST00000487354 HFM1A2PYH4 1435 aa23.46■■□□□ 1.35
MCF2L-228ENST00000487354 FNBP4Q8N3X1 1017 aaPredicted RBP23.45■■□□□ 1.34
MCF2L-228ENST00000487354 ATAD2Q6PL18 1390 aa23.44■■□□□ 1.34
MCF2L-228ENST00000487354 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.44■■□□□ 1.34
MCF2L-228ENST00000487354 IFT172Q9UG01 1749 aa23.44■■□□□ 1.34
MCF2L-228ENST00000487354 BCL9LQ86UU0 1499 aa23.43■■□□□ 1.34
MCF2L-228ENST00000487354 USP21Q9UK80 565 aa23.43■■□□□ 1.34
MCF2L-228ENST00000487354 KNDC1Q76NI1 1749 aa23.41■■□□□ 1.34
MCF2L-228ENST00000487354 VGFO15240 615 aaPredicted RBP23.4■■□□□ 1.34
MCF2L-228ENST00000487354 TRPC5Q9UL62 973 aaPredicted RBP23.4■■□□□ 1.34
MCF2L-228ENST00000487354 RPGRIP1LQ68CZ1 1315 aa23.37■■□□□ 1.33
MCF2L-228ENST00000487354 FMN2Q9NZ56 1722 aa23.37■■□□□ 1.33
MCF2L-228ENST00000487354 TECPR2O15040 1411 aa23.37■■□□□ 1.33
MCF2L-228ENST00000487354 GLI3P10071 1580 aa23.36■■□□□ 1.33
MCF2L-228ENST00000487354 BRWD3Q6RI45 1802 aa23.35■■□□□ 1.33
MCF2L-228ENST00000487354 NPHP3Q7Z494 1330 aa23.33■■□□□ 1.33
MCF2L-228ENST00000487354 RGPD8O14715 1765 aaPredicted RBP23.32■■□□□ 1.32
MCF2L-228ENST00000487354 KIF1AQ12756 1690 aa23.32■■□□□ 1.32
MCF2L-228ENST00000487354 USP32Q8NFA0 1604 aa23.31■■□□□ 1.32
MCF2L-228ENST00000487354 XPCQ01831 940 aaPredicted RBP23.31■■□□□ 1.32
MCF2L-228ENST00000487354 ESCO1Q5FWF5 840 aa23.31■■□□□ 1.32
MCF2L-228ENST00000487354 SLIT2O94813 1529 aa23.31■■□□□ 1.32
MCF2L-228ENST00000487354 SPATA31E1Q6ZUB1 1445 aa23.31■■□□□ 1.32
MCF2L-228ENST00000487354 ADGRF5Q8IZF2 1346 aa23.31■■□□□ 1.32
MCF2L-228ENST00000487354 ABCA3Q99758 1704 aa23.3■■□□□ 1.32
MCF2L-228ENST00000487354 PLEKHH1Q9ULM0 1364 aa23.3■■□□□ 1.32
MCF2L-228ENST00000487354 FOXO3O43524 673 aa23.28■■□□□ 1.32
MCF2L-228ENST00000487354 RALGAPBQ86X10 1494 aa23.28■■□□□ 1.32
MCF2L-228ENST00000487354 LRPPRCP42704 1394 aaKnown RBP23.27■■□□□ 1.32
MCF2L-228ENST00000487354 PLCH1Q4KWH8 1693 aa23.26■■□□□ 1.31
MCF2L-228ENST00000487354 WAPLQ7Z5K2 1190 aa23.26■■□□□ 1.31
MCF2L-228ENST00000487354 SLC4A1APQ9BWU0 796 aaKnown RBP23.26■■□□□ 1.31
MCF2L-228ENST00000487354 PIK3C2GO75747 1445 aa23.25■■□□□ 1.31
MCF2L-228ENST00000487354 FOXD1Q16676 465 aa23.25■■□□□ 1.31
MCF2L-228ENST00000487354 GJD4Q96KN9 370 aaPredicted RBP23.25■■□□□ 1.31
MCF2L-228ENST00000487354 ABCC11Q96J66 1382 aa23.24■■□□□ 1.31
MCF2L-228ENST00000487354 NWD2Q9ULI1 1742 aa23.23■■□□□ 1.31
MCF2L-228ENST00000487354 NUTM2FA1L443 756 aa23.22■■□□□ 1.31
MCF2L-228ENST00000487354 ZRANB1Q9UGI0 708 aa23.22■■□□□ 1.31
MCF2L-228ENST00000487354 SPATA31A3Q5VYP0 1347 aa23.22■■□□□ 1.31
MCF2L-228ENST00000487354 CCDC144AA2RUR9 1427 aa23.2■■□□□ 1.3
MCF2L-228ENST00000487354 CCDC125Q86Z20 511 aa23.2■■□□□ 1.3
MCF2L-228ENST00000487354 STK26Q9P289 416 aa23.2■■□□□ 1.3
MCF2L-228ENST00000487354 YTHDC2Q9H6S0 1430 aaKnown RBP23.19■■□□□ 1.3
MCF2L-228ENST00000487354 ANKRD30BQ9BXX2 1392 aa23.19■■□□□ 1.3
MCF2L-228ENST00000487354 UNC5CLQ8IV45 518 aa23.19■■□□□ 1.3
MCF2L-228ENST00000487354 BLMP54132 1417 aaPredicted RBP23.18■■□□□ 1.3
MCF2L-228ENST00000487354 TMEM132EQ6IEE7 984 aa23.18■■□□□ 1.3
MCF2L-228ENST00000487354 NRAPQ86VF7 1730 aa23.17■■□□□ 1.3
MCF2L-228ENST00000487354 TNS3Q68CZ2 1445 aa23.16■■□□□ 1.3
MCF2L-228ENST00000487354 NRXN1Q9ULB1 1477 aa23.16■■□□□ 1.3
MCF2L-228ENST00000487354 LRP5O75197 1615 aa23.15■■□□□ 1.3
MCF2L-228ENST00000487354 RGL3Q3MIN7 710 aa23.14■■□□□ 1.29
MCF2L-228ENST00000487354 TRPM3Q9HCF6 1732 aaPredicted RBP23.13■■□□□ 1.29
MCF2L-228ENST00000487354 KRT28Q7Z3Y7 464 aa23.11■■□□□ 1.29
MCF2L-228ENST00000487354 DEFB132Q7Z7B7 95 aa23.1■■□□□ 1.29
MCF2L-228ENST00000487354 CRYBG1Q9Y4K1 1723 aa23.1■■□□□ 1.29
MCF2L-228ENST00000487354 ADGRB2O60241 1585 aa23.1■■□□□ 1.29
MCF2L-228ENST00000487354 ALS2Q96Q42 1657 aa23.09■■□□□ 1.29
MCF2L-228ENST00000487354 VPS72Q15906 364 aa23.08■■□□□ 1.29
MCF2L-228ENST00000487354 SEPT12Q8IYM1 358 aa23.08■■□□□ 1.29
MCF2L-228ENST00000487354 CABLES1Q8TDN4 633 aa23.08■■□□□ 1.29
MCF2L-228ENST00000487354 SIRT1Q96EB6 747 aa23.08■■□□□ 1.29
MCF2L-228ENST00000487354 SBNO1A3KN83 1393 aa23.08■■□□□ 1.29
MCF2L-228ENST00000487354 ONECUT3O60422 494 aaPredicted RBP23.07■■□□□ 1.28
MCF2L-228ENST00000487354 PHF8Q9UPP1 1060 aa23.07■■□□□ 1.28
MCF2L-228ENST00000487354 MPHOSPH9Q99550 1183 aa23.06■■□□□ 1.28
MCF2L-228ENST00000487354 C14orf93Q9H972 538 aaKnown RBP23.06■■□□□ 1.28
MCF2L-228ENST00000487354 DLC1Q96QB1 1528 aa23.06■■□□□ 1.28
MCF2L-228ENST00000487354 ADGRB1O14514 1584 aa23.04■■□□□ 1.28
MCF2L-228ENST00000487354 COL14A1Q05707 1796 aaKnown RBP23.02■■□□□ 1.28
MCF2L-228ENST00000487354 ARHGEF10O15013 1369 aa23.01■■□□□ 1.27
MCF2L-228ENST00000487354 ANKARQ7Z5J8 1434 aa23.01■■□□□ 1.27
MCF2L-228ENST00000487354 CFAP70Q5T0N1 1121 aa23.01■■□□□ 1.27
MCF2L-228ENST00000487354 TNS1Q9HBL0 1735 aaKnown RBP23.01■■□□□ 1.27
MCF2L-228ENST00000487354 THSD7AQ9UPZ6 1657 aa23■■□□□ 1.27
MCF2L-228ENST00000487354 RGPD1P0DJD0 1748 aa23■■□□□ 1.27
MCF2L-228ENST00000487354 FAM83GA6ND36 823 aa22.99■■□□□ 1.27
MCF2L-228ENST00000487354 PSME1Q06323 249 aa22.98■■□□□ 1.27
MCF2L-228ENST00000487354 KRT27Q7Z3Y8 459 aa22.98■■□□□ 1.27
MCF2L-228ENST00000487354 PRAM1Q96QH2 718 aa22.98■■□□□ 1.27
MCF2L-228ENST00000487354 DHX57Q6P158 1386 aaKnown RBP22.98■■□□□ 1.27
MCF2L-228ENST00000487354 PLEKHG5O94827 1062 aa22.97■■□□□ 1.27
MCF2L-228ENST00000487354 HAP1P54257 671 aaPredicted RBP22.96■■□□□ 1.27
MCF2L-228ENST00000487354 SAFB2Q14151 953 aaKnown RBP eCLIP22.96■■□□□ 1.27
MCF2L-228ENST00000487354 TULP4Q9NRJ4 1543 aa22.94■■□□□ 1.26
MCF2L-228ENST00000487354 PMFBP1Q8TBY8 1022 aa22.94■■□□□ 1.26
MCF2L-228ENST00000487354 PRR36Q9H6K5 1346 aa22.93■■□□□ 1.26
MCF2L-228ENST00000487354 SF3B2Q13435 895 aaKnown RBP22.93■■□□□ 1.26
MCF2L-228ENST00000487354 CCDC9Q9Y3X0 531 aaKnown RBP22.93■■□□□ 1.26
MCF2L-228ENST00000487354 LMOD2Q6P5Q4 547 aa22.92■■□□□ 1.26
MCF2L-228ENST00000487354 PHRF1Q9P1Y6 1649 aaKnown RBP22.91■■□□□ 1.26
MCF2L-228ENST00000487354 FAM98CQ17RN3 349 aaKnown RBP22.9■■□□□ 1.26
MCF2L-228ENST00000487354 ARHGEF28Q8N1W1 1705 aaKnown RBP22.9■■□□□ 1.26
MCF2L-228ENST00000487354 PSDA5PKW4 1024 aaPredicted RBP22.89■■□□□ 1.25
MCF2L-228ENST00000487354 BTG4Q9NY30 223 aa22.89■■□□□ 1.25
MCF2L-228ENST00000487354 DISP2A7MBM2 1401 aa22.89■■□□□ 1.25
MCF2L-228ENST00000487354 ITSN1Q15811 1721 aa22.88■■□□□ 1.25
MCF2L-228ENST00000487354 HRCP23327 699 aa22.88■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms