RNA–Protein interactions for RNA: ENST00000487215.1

SMPDL3A-202, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2

Gene SMPDL3A, Length 903 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-202ENST00000487215 FNBP4Q8N3X1 1017 aaPredicted RBP29.28■■■□□ 2.28
SMPDL3A-202ENST00000487215 FOXD1Q16676 465 aa29.27■■■□□ 2.28
SMPDL3A-202ENST00000487215 TRPC5Q9UL62 973 aaPredicted RBP29.27■■■□□ 2.28
SMPDL3A-202ENST00000487215 MYOM2P54296 1465 aa29.27■■■□□ 2.28
SMPDL3A-202ENST00000487215 NPHP3Q7Z494 1330 aa29.26■■■□□ 2.27
SMPDL3A-202ENST00000487215 ESCO1Q5FWF5 840 aa29.26■■■□□ 2.27
SMPDL3A-202ENST00000487215 ADGRF5Q8IZF2 1346 aa29.25■■■□□ 2.27
SMPDL3A-202ENST00000487215 PXDNQ92626 1479 aa29.25■■■□□ 2.27
SMPDL3A-202ENST00000487215 ATRNO75882 1429 aa29.25■■■□□ 2.27
SMPDL3A-202ENST00000487215 ATAD2Q6PL18 1390 aa29.25■■■□□ 2.27
SMPDL3A-202ENST00000487215 TECPR2O15040 1411 aa29.22■■■□□ 2.27
SMPDL3A-202ENST00000487215 CCDC144AA2RUR9 1427 aa29.21■■■□□ 2.27
SMPDL3A-202ENST00000487215 SPATA31E1Q6ZUB1 1445 aa29.2■■■□□ 2.26
SMPDL3A-202ENST00000487215 LRPPRCP42704 1394 aaKnown RBP29.19■■■□□ 2.26
SMPDL3A-202ENST00000487215 FOXO3O43524 673 aa29.19■■■□□ 2.26
SMPDL3A-202ENST00000487215 XPCQ01831 940 aaPredicted RBP29.19■■■□□ 2.26
SMPDL3A-202ENST00000487215 STK26Q9P289 416 aa29.19■■■□□ 2.26
SMPDL3A-202ENST00000487215 RGL3Q3MIN7 710 aa29.18■■■□□ 2.26
SMPDL3A-202ENST00000487215 WAPLQ7Z5K2 1190 aa29.18■■■□□ 2.26
SMPDL3A-202ENST00000487215 BCL9LQ86UU0 1499 aa29.17■■■□□ 2.26
SMPDL3A-202ENST00000487215 IFT172Q9UG01 1749 aa29.17■■■□□ 2.26
SMPDL3A-202ENST00000487215 ANKRD30BQ9BXX2 1392 aa29.16■■■□□ 2.26
SMPDL3A-202ENST00000487215 NUTM2FA1L443 756 aa29.16■■■□□ 2.26
SMPDL3A-202ENST00000487215 PLEKHH1Q9ULM0 1364 aa29.15■■■□□ 2.26
SMPDL3A-202ENST00000487215 ABCC11Q96J66 1382 aa29.14■■■□□ 2.26
SMPDL3A-202ENST00000487215 KNDC1Q76NI1 1749 aa29.14■■■□□ 2.26
SMPDL3A-202ENST00000487215 MARF1Q9Y4F3 1742 aaKnown RBP29.14■■■□□ 2.26
SMPDL3A-202ENST00000487215 TMEM132EQ6IEE7 984 aa29.13■■■□□ 2.25
SMPDL3A-202ENST00000487215 PIK3C2GO75747 1445 aa29.12■■■□□ 2.25
SMPDL3A-202ENST00000487215 MPHOSPH9Q99550 1183 aa29.1■■■□□ 2.25
SMPDL3A-202ENST00000487215 FMN2Q9NZ56 1722 aa29.1■■■□□ 2.25
SMPDL3A-202ENST00000487215 YTHDC2Q9H6S0 1430 aaKnown RBP29.08■■■□□ 2.25
SMPDL3A-202ENST00000487215 GJD4Q96KN9 370 aaPredicted RBP29.07■■■□□ 2.24
SMPDL3A-202ENST00000487215 KIF1AQ12756 1690 aa29.06■■■□□ 2.24
SMPDL3A-202ENST00000487215 SPATA31A3Q5VYP0 1347 aa29.06■■■□□ 2.24
SMPDL3A-202ENST00000487215 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.05■■■□□ 2.24
SMPDL3A-202ENST00000487215 SLIT2O94813 1529 aa29.03■■■□□ 2.24
SMPDL3A-202ENST00000487215 EP400Q96L91 3159 aa29.01■■■□□ 2.24
SMPDL3A-202ENST00000487215 UNC5CLQ8IV45 518 aa29.01■■■□□ 2.23
SMPDL3A-202ENST00000487215 GLI3P10071 1580 aa29.01■■■□□ 2.23
SMPDL3A-202ENST00000487215 RALGAPBQ86X10 1494 aa29■■■□□ 2.23
SMPDL3A-202ENST00000487215 KRT28Q7Z3Y7 464 aa29■■■□□ 2.23
SMPDL3A-202ENST00000487215 CCDC125Q86Z20 511 aa29■■■□□ 2.23
SMPDL3A-202ENST00000487215 SIRT1Q96EB6 747 aa29■■■□□ 2.23
SMPDL3A-202ENST00000487215 USP32Q8NFA0 1604 aa29■■■□□ 2.23
SMPDL3A-202ENST00000487215 C14orf93Q9H972 538 aaKnown RBP28.98■■■□□ 2.23
SMPDL3A-202ENST00000487215 ZRANB1Q9UGI0 708 aa28.98■■■□□ 2.23
SMPDL3A-202ENST00000487215 SRCAPQ6ZRS2 3230 aa28.97■■■□□ 2.23
SMPDL3A-202ENST00000487215 NRXN1Q9ULB1 1477 aa28.97■■■□□ 2.23
SMPDL3A-202ENST00000487215 TNS3Q68CZ2 1445 aa28.96■■■□□ 2.23
SMPDL3A-202ENST00000487215 PHF8Q9UPP1 1060 aa28.96■■■□□ 2.23
SMPDL3A-202ENST00000487215 CFAP70Q5T0N1 1121 aa28.94■■■□□ 2.22
SMPDL3A-202ENST00000487215 DHX57Q6P158 1386 aaKnown RBP28.93■■■□□ 2.22
SMPDL3A-202ENST00000487215 RGPD8O14715 1765 aaPredicted RBP28.93■■■□□ 2.22
SMPDL3A-202ENST00000487215 PSME1Q06323 249 aa28.91■■■□□ 2.22
SMPDL3A-202ENST00000487215 HAP1P54257 671 aaPredicted RBP28.9■■■□□ 2.22
SMPDL3A-202ENST00000487215 CABLES1Q8TDN4 633 aa28.9■■■□□ 2.22
SMPDL3A-202ENST00000487215 SBNO1A3KN83 1393 aa28.89■■■□□ 2.22
SMPDL3A-202ENST00000487215 BLMP54132 1417 aaPredicted RBP28.89■■■□□ 2.22
SMPDL3A-202ENST00000487215 PRAM1Q96QH2 718 aa28.89■■■□□ 2.22
SMPDL3A-202ENST00000487215 SAFB2Q14151 953 aaKnown RBP eCLIP28.88■■■□□ 2.21
SMPDL3A-202ENST00000487215 PLEKHG5O94827 1062 aa28.87■■■□□ 2.21
SMPDL3A-202ENST00000487215 PLCH1Q4KWH8 1693 aa28.86■■■□□ 2.21
SMPDL3A-202ENST00000487215 ABCA3Q99758 1704 aa28.86■■■□□ 2.21
SMPDL3A-202ENST00000487215 VPS72Q15906 364 aa28.86■■■□□ 2.21
SMPDL3A-202ENST00000487215 BRWD3Q6RI45 1802 aa28.85■■■□□ 2.21
SMPDL3A-202ENST00000487215 DLC1Q96QB1 1528 aa28.85■■■□□ 2.21
SMPDL3A-202ENST00000487215 SEPT12Q8IYM1 358 aa28.85■■■□□ 2.21
SMPDL3A-202ENST00000487215 ARHGEF10O15013 1369 aa28.85■■■□□ 2.21
SMPDL3A-202ENST00000487215 NWD2Q9ULI1 1742 aa28.84■■■□□ 2.21
SMPDL3A-202ENST00000487215 LMOD2Q6P5Q4 547 aa28.84■■■□□ 2.21
SMPDL3A-202ENST00000487215 ACIN1Q9UKV3 1341 aaKnown RBP28.84■■■□□ 2.21
SMPDL3A-202ENST00000487215 ANKARQ7Z5J8 1434 aa28.84■■■□□ 2.21
SMPDL3A-202ENST00000487215 ADGRB2O60241 1585 aa28.81■■■□□ 2.2
SMPDL3A-202ENST00000487215 PMFBP1Q8TBY8 1022 aa28.81■■■□□ 2.2
SMPDL3A-202ENST00000487215 POGKQ9P215 609 aa28.81■■■□□ 2.2
SMPDL3A-202ENST00000487215 DEFB132Q7Z7B7 95 aa28.8■■■□□ 2.2
SMPDL3A-202ENST00000487215 CCDC9Q9Y3X0 531 aaKnown RBP28.8■■■□□ 2.2
SMPDL3A-202ENST00000487215 ADGRB1O14514 1584 aa28.79■■■□□ 2.2
SMPDL3A-202ENST00000487215 ONECUT3O60422 494 aaPredicted RBP28.79■■■□□ 2.2
SMPDL3A-202ENST00000487215 FAM83GA6ND36 823 aa28.77■■■□□ 2.2
SMPDL3A-202ENST00000487215 TRPM3Q9HCF6 1732 aaPredicted RBP28.75■■■□□ 2.19
SMPDL3A-202ENST00000487215 SF3B2Q13435 895 aaKnown RBP28.75■■■□□ 2.19
SMPDL3A-202ENST00000487215 KRT27Q7Z3Y8 459 aa28.75■■■□□ 2.19
SMPDL3A-202ENST00000487215 HIRIP3Q9BW71 556 aaPredicted RBP28.74■■■□□ 2.19
SMPDL3A-202ENST00000487215 NRAPQ86VF7 1730 aa28.73■■■□□ 2.19
SMPDL3A-202ENST00000487215 TRAK1Q9UPV9 953 aa28.73■■■□□ 2.19
SMPDL3A-202ENST00000487215 RAB3GAP2Q9H2M9 1393 aa28.72■■■□□ 2.19
SMPDL3A-202ENST00000487215 PRR36Q9H6K5 1346 aa28.71■■■□□ 2.19
SMPDL3A-202ENST00000487215 ALS2Q96Q42 1657 aa28.7■■■□□ 2.19
SMPDL3A-202ENST00000487215 TULP4Q9NRJ4 1543 aa28.7■■■□□ 2.19
SMPDL3A-202ENST00000487215 GPRASP1Q5JY77 1395 aa28.7■■■□□ 2.18
SMPDL3A-202ENST00000487215 MINK1Q8N4C8 1332 aaPredicted RBP28.69■■■□□ 2.18
SMPDL3A-202ENST00000487215 EIF3AQ14152 1382 aaKnown RBP28.69■■■□□ 2.18
SMPDL3A-202ENST00000487215 A0A0G2JS52 829 aa28.68■■■□□ 2.18
SMPDL3A-202ENST00000487215 MYT1Q01538 1121 aa28.68■■■□□ 2.18
SMPDL3A-202ENST00000487215 BTG4Q9NY30 223 aa28.68■■■□□ 2.18
SMPDL3A-202ENST00000487215 FAM98CQ17RN3 349 aaKnown RBP28.67■■■□□ 2.18
SMPDL3A-202ENST00000487215 COL14A1Q05707 1796 aaKnown RBP28.67■■■□□ 2.18
SMPDL3A-202ENST00000487215 WASLO00401 505 aaPredicted RBP28.65■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms