RNA–Protein interactions for RNA: ENST00000486828.6

PDLIM7-207, Transcript of PDZ and LIM domain 7, humanhuman

TSL 1 (best)

Gene PDLIM7, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-207ENST00000486828 SLFN5Q08AF3 891 aa23.65■■□□□ 1.38
PDLIM7-207ENST00000486828 SLC12A5Q9H2X9 1139 aa23.65■■□□□ 1.38
PDLIM7-207ENST00000486828 TULP4Q9NRJ4 1543 aa23.64■■□□□ 1.37
PDLIM7-207ENST00000486828 NUTM2DQ5VT03 806 aaPredicted RBP23.64■■□□□ 1.37
PDLIM7-207ENST00000486828 NGEFQ8N5V2 710 aa23.64■■□□□ 1.37
PDLIM7-207ENST00000486828 CRBNQ96SW2 442 aa23.64■■□□□ 1.37
PDLIM7-207ENST00000486828 APAF1O14727 1248 aa23.63■■□□□ 1.37
PDLIM7-207ENST00000486828 TRMT2AQ8IZ69 625 aaKnown RBP23.63■■□□□ 1.37
PDLIM7-207ENST00000486828 EVC2Q86UK5 1308 aa23.63■■□□□ 1.37
PDLIM7-207ENST00000486828 MORC1Q86VD1 984 aa23.63■■□□□ 1.37
PDLIM7-207ENST00000486828 TMEM131LA2VDJ0 1609 aa23.62■■□□□ 1.37
PDLIM7-207ENST00000486828 SHPRHQ149N8 1683 aa23.6■■□□□ 1.37
PDLIM7-207ENST00000486828 MYO5BQ9ULV0 1848 aa23.59■■□□□ 1.37
PDLIM7-207ENST00000486828 TCERG1O14776 1098 aaKnown RBP23.59■■□□□ 1.37
PDLIM7-207ENST00000486828 ESF1Q9H501 851 aaKnown RBP23.59■■□□□ 1.37
PDLIM7-207ENST00000486828 CGNL1Q0VF96 1302 aa23.58■■□□□ 1.37
PDLIM7-207ENST00000486828 KDM4FA0A1W2PPD8 638 aa23.58■■□□□ 1.37
PDLIM7-207ENST00000486828 ANKRD36BQ8N2N9 1353 aa23.58■■□□□ 1.36
PDLIM7-207ENST00000486828 ERICH6Q7L0X2 663 aa23.57■■□□□ 1.36
PDLIM7-207ENST00000486828 CLTCQ00610 1675 aaKnown RBP23.57■■□□□ 1.36
PDLIM7-207ENST00000486828 C20orf194Q5TEA3 1177 aa23.57■■□□□ 1.36
PDLIM7-207ENST00000486828 NKTRP30414 1462 aaKnown RBP23.57■■□□□ 1.36
PDLIM7-207ENST00000486828 E9PSI1 815 aa23.56■■□□□ 1.36
PDLIM7-207ENST00000486828 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.56■■□□□ 1.36
PDLIM7-207ENST00000486828 NSD2O96028 1365 aa23.55■■□□□ 1.36
PDLIM7-207ENST00000486828 SPINK5Q9NQ38 1064 aaPredicted RBP23.55■■□□□ 1.36
PDLIM7-207ENST00000486828 MS4A1P11836 297 aa23.52■■□□□ 1.36
PDLIM7-207ENST00000486828 NINLQ9Y2I6 1382 aa23.52■■□□□ 1.36
PDLIM7-207ENST00000486828 TNNT2P45379 298 aaPredicted RBP23.51■■□□□ 1.35
PDLIM7-207ENST00000486828 ZMYM3Q14202 1370 aa23.51■■□□□ 1.35
PDLIM7-207ENST00000486828 ADAMTSL3P82987 1691 aa23.51■■□□□ 1.35
PDLIM7-207ENST00000486828 PTPRMP28827 1452 aa23.51■■□□□ 1.35
PDLIM7-207ENST00000486828 CABP2Q9NPB3 220 aa23.51■■□□□ 1.35
PDLIM7-207ENST00000486828 FER1L4A9Z1Z3 1794 aa23.5■■□□□ 1.35
PDLIM7-207ENST00000486828 IQSEC2Q5JU85 1478 aa23.49■■□□□ 1.35
PDLIM7-207ENST00000486828 ANP32AP39687 249 aaKnown RBP23.49■■□□□ 1.35
PDLIM7-207ENST00000486828 FBXO31Q5XUX0 539 aaPredicted RBP23.48■■□□□ 1.35
PDLIM7-207ENST00000486828 WWC1Q8IX03 1113 aa23.48■■□□□ 1.35
PDLIM7-207ENST00000486828 CFAP53Q96M91 514 aa23.48■■□□□ 1.35
PDLIM7-207ENST00000486828 YTHDC2Q9H6S0 1430 aaKnown RBP23.47■■□□□ 1.35
PDLIM7-207ENST00000486828 MTHFSP49914 203 aa23.47■■□□□ 1.35
PDLIM7-207ENST00000486828 RUNDC1Q96C34 613 aa23.47■■□□□ 1.35
PDLIM7-207ENST00000486828 STK26Q9P289 416 aa23.47■■□□□ 1.35
PDLIM7-207ENST00000486828 DMRT2Q9Y5R5 561 aa23.47■■□□□ 1.35
PDLIM7-207ENST00000486828 SAFB2Q14151 953 aaKnown RBP eCLIP23.47■■□□□ 1.35
PDLIM7-207ENST00000486828 KDM2BQ8NHM5 1336 aa23.46■■□□□ 1.35
PDLIM7-207ENST00000486828 ABCC11Q96J66 1382 aa23.45■■□□□ 1.34
PDLIM7-207ENST00000486828 ALKQ9UM73 1620 aa23.45■■□□□ 1.34
PDLIM7-207ENST00000486828 NOP58Q9Y2X3 529 aaKnown RBP23.45■■□□□ 1.34
PDLIM7-207ENST00000486828 A0A1W2PP64 1363 aa23.44■■□□□ 1.34
PDLIM7-207ENST00000486828 ATAD2Q6PL18 1390 aa23.44■■□□□ 1.34
PDLIM7-207ENST00000486828 PDE4AP27815 886 aa23.43■■□□□ 1.34
PDLIM7-207ENST00000486828 SRPK2P78362 688 aaKnown RBP23.43■■□□□ 1.34
PDLIM7-207ENST00000486828 CENPQQ7L2Z9 268 aaPredicted RBP23.43■■□□□ 1.34
PDLIM7-207ENST00000486828 IPO9Q96P70 1041 aaKnown RBP23.43■■□□□ 1.34
PDLIM7-207ENST00000486828 RIMS1Q86UR5 1692 aaKnown RBP23.42■■□□□ 1.34
PDLIM7-207ENST00000486828 PHF23Q9BUL5 403 aaPredicted RBP23.42■■□□□ 1.34
PDLIM7-207ENST00000486828 CEBPAP49715 358 aaPredicted RBP23.41■■□□□ 1.34
PDLIM7-207ENST00000486828 TCP11L2Q8N4U5 519 aa23.41■■□□□ 1.34
PDLIM7-207ENST00000486828 PRAM1Q96QH2 718 aa23.41■■□□□ 1.34
PDLIM7-207ENST00000486828 BACH2Q9BYV9 841 aa23.41■■□□□ 1.34
PDLIM7-207ENST00000486828 SPATA31D1Q6ZQQ2 1576 aa23.4■■□□□ 1.34
PDLIM7-207ENST00000486828 BCAR3O75815 825 aa23.4■■□□□ 1.34
PDLIM7-207ENST00000486828 PLPPR3Q6T4P5 718 aa23.4■■□□□ 1.34
PDLIM7-207ENST00000486828 SENP3Q9H4L4 574 aaPredicted RBP23.4■■□□□ 1.34
PDLIM7-207ENST00000486828 POGKQ9P215 609 aa23.39■■□□□ 1.34
PDLIM7-207ENST00000486828 MINK1Q8N4C8 1332 aaPredicted RBP23.39■■□□□ 1.33
PDLIM7-207ENST00000486828 C3P01024 1663 aa23.39■■□□□ 1.33
PDLIM7-207ENST00000486828 NCBP3Q53F19 620 aaKnown RBP23.39■■□□□ 1.33
PDLIM7-207ENST00000486828 STAG3Q9UJ98 1225 aa23.39■■□□□ 1.33
PDLIM7-207ENST00000486828 CCDC27Q2M243 656 aa23.38■■□□□ 1.33
PDLIM7-207ENST00000486828 ANKRD26Q9UPS8 1709 aa23.38■■□□□ 1.33
PDLIM7-207ENST00000486828 WDR63Q8IWG1 891 aa23.37■■□□□ 1.33
PDLIM7-207ENST00000486828 A2ML1A8K2U0 1454 aa23.37■■□□□ 1.33
PDLIM7-207ENST00000486828 MED14O60244 1454 aa23.37■■□□□ 1.33
PDLIM7-207ENST00000486828 CD163L1Q9NR16 1453 aa23.37■■□□□ 1.33
PDLIM7-207ENST00000486828 TERF2IPQ9NYB0 399 aa23.37■■□□□ 1.33
PDLIM7-207ENST00000486828 RRP7AQ9Y3A4 280 aaKnown RBP23.36■■□□□ 1.33
PDLIM7-207ENST00000486828 NEUROD2Q15784 382 aa23.35■■□□□ 1.33
PDLIM7-207ENST00000486828 ADGRB2O60241 1585 aa23.35■■□□□ 1.33
PDLIM7-207ENST00000486828 DLC1Q96QB1 1528 aa23.35■■□□□ 1.33
PDLIM7-207ENST00000486828 NLRP1Q9C000 1473 aa23.34■■□□□ 1.33
PDLIM7-207ENST00000486828 PAK3O75914 559 aaPredicted RBP23.33■■□□□ 1.33
PDLIM7-207ENST00000486828 PDE3AQ14432 1141 aa23.33■■□□□ 1.33
PDLIM7-207ENST00000486828 SKAP1Q86WV1 359 aa23.33■■□□□ 1.32
PDLIM7-207ENST00000486828 U2AF1L5P0DN76 240 aaPredicted RBP23.32■■□□□ 1.32
PDLIM7-207ENST00000486828 U2AF1Q01081 240 aaKnown RBP eCLIP23.32■■□□□ 1.324e-6■■□□□ 12.1
PDLIM7-207ENST00000486828 GGNBP2Q9H3C7 697 aa23.32■■□□□ 1.32
PDLIM7-207ENST00000486828 TNRQ92752 1358 aa23.32■■□□□ 1.32
PDLIM7-207ENST00000486828 RIMS2Q9UQ26 1411 aa23.32■■□□□ 1.32
PDLIM7-207ENST00000486828 COL3A1P02461 1466 aaPredicted RBP23.31■■□□□ 1.32
PDLIM7-207ENST00000486828 SETD1AO15047 1707 aaKnown RBP23.31■■□□□ 1.32
PDLIM7-207ENST00000486828 FYB1O15117 783 aa23.31■■□□□ 1.32
PDLIM7-207ENST00000486828 CDK19Q9BWU1 502 aa23.31■■□□□ 1.32
PDLIM7-207ENST00000486828 ZBTB47Q9UFB7 747 aaPredicted RBP23.31■■□□□ 1.32
PDLIM7-207ENST00000486828 HDGFL2Q7Z4V5 671 aaPredicted RBP23.3■■□□□ 1.32
PDLIM7-207ENST00000486828 RARSP54136 660 aaKnown RBP23.27■■□□□ 1.32
PDLIM7-207ENST00000486828 NPM2Q86SE8 214 aaKnown RBP23.27■■□□□ 1.32
PDLIM7-207ENST00000486828 KIF20BQ96Q89 1820 aa23.27■■□□□ 1.32
PDLIM7-207ENST00000486828 CANXP27824 592 aaKnown RBP23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms