RNA–Protein interactions for RNA: ENST00000486806.1

MCF2L-227, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 361 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-227ENST00000486806 LRRC7Q96NW7 1537 aa13.45□□□□□ -0.26
MCF2L-227ENST00000486806 HIRIP3Q9BW71 556 aaPredicted RBP13.45□□□□□ -0.26
MCF2L-227ENST00000486806 POGKQ9P215 609 aa13.45□□□□□ -0.26
MCF2L-227ENST00000486806 CDC42BPGQ6DT37 1551 aa13.45□□□□□ -0.26
MCF2L-227ENST00000486806 DISP3Q9P2K9 1392 aa13.45□□□□□ -0.26
MCF2L-227ENST00000486806 NALCNQ8IZF0 1738 aa13.44□□□□□ -0.26
MCF2L-227ENST00000486806 SAFB2Q14151 953 aaKnown RBP eCLIP13.44□□□□□ -0.26
MCF2L-227ENST00000486806 TMEM94Q12767 1356 aa13.44□□□□□ -0.26
MCF2L-227ENST00000486806 SLC24A1O60721 1099 aa13.42□□□□□ -0.26
MCF2L-227ENST00000486806 MINK1Q8N4C8 1332 aaPredicted RBP13.41□□□□□ -0.26
MCF2L-227ENST00000486806 DCCP43146 1447 aa13.41□□□□□ -0.26
MCF2L-227ENST00000486806 C11orf95C9JLR9 678 aaPredicted RBP13.41□□□□□ -0.26
MCF2L-227ENST00000486806 TMF1P82094 1093 aa13.41□□□□□ -0.26
MCF2L-227ENST00000486806 PROSER2Q86WR7 435 aaPredicted RBP13.4□□□□□ -0.26
MCF2L-227ENST00000486806 RBM33Q96EV2 1170 aaKnown RBP13.4□□□□□ -0.26
MCF2L-227ENST00000486806 XIRP1Q702N8 1843 aaKnown RBP13.4□□□□□ -0.26
MCF2L-227ENST00000486806 KIF7Q2M1P5 1343 aa13.39□□□□□ -0.27
MCF2L-227ENST00000486806 WASHC2AQ641Q2 1341 aa13.39□□□□□ -0.27
MCF2L-227ENST00000486806 EVC2Q86UK5 1308 aa13.39□□□□□ -0.27
MCF2L-227ENST00000486806 ZNF316A6NFI3 1004 aaPredicted RBP13.39□□□□□ -0.27
MCF2L-227ENST00000486806 CCDC7Q96M83 1385 aa13.39□□□□□ -0.27
MCF2L-227ENST00000486806 ATP7BP35670 1465 aa13.39□□□□□ -0.27
MCF2L-227ENST00000486806 WASLO00401 505 aaPredicted RBP13.38□□□□□ -0.27
MCF2L-227ENST00000486806 PUS7Q96PZ0 661 aaKnown RBP13.38□□□□□ -0.27
MCF2L-227ENST00000486806 FMN2Q9NZ56 1722 aa13.37□□□□□ -0.27
MCF2L-227ENST00000486806 ANKARQ7Z5J8 1434 aa13.37□□□□□ -0.27
MCF2L-227ENST00000486806 ATAD2Q6PL18 1390 aa13.36□□□□□ -0.27
MCF2L-227ENST00000486806 USP32Q8NFA0 1604 aa13.36□□□□□ -0.27
MCF2L-227ENST00000486806 CDCA8Q53HL2 280 aa13.36□□□□□ -0.27
MCF2L-227ENST00000486806 CDK19Q9BWU1 502 aa13.36□□□□□ -0.27
MCF2L-227ENST00000486806 C19orf44Q9H6X5 657 aa13.36□□□□□ -0.27
MCF2L-227ENST00000486806 MYOM1P52179 1685 aa13.36□□□□□ -0.27
MCF2L-227ENST00000486806 TOPAZ1Q8N9V7 1692 aa13.36□□□□□ -0.27
MCF2L-227ENST00000486806 MSH6P52701 1360 aa13.35□□□□□ -0.27
MCF2L-227ENST00000486806 PRR36Q9H6K5 1346 aa13.35□□□□□ -0.27
MCF2L-227ENST00000486806 MST1RQ04912 1400 aa13.34□□□□□ -0.27
MCF2L-227ENST00000486806 CABP2Q9NPB3 220 aa13.34□□□□□ -0.27
MCF2L-227ENST00000486806 IQSEC2Q5JU85 1478 aa13.34□□□□□ -0.27
MCF2L-227ENST00000486806 NINLQ9Y2I6 1382 aa13.33□□□□□ -0.27
MCF2L-227ENST00000486806 SRPK2P78362 688 aaKnown RBP13.33□□□□□ -0.28
MCF2L-227ENST00000486806 C14orf37Q86TY3 774 aa13.33□□□□□ -0.28
MCF2L-227ENST00000486806 C1orf167Q5SNV9 1468 aa13.32□□□□□ -0.28
MCF2L-227ENST00000486806 CADPS2Q86UW7 1296 aa13.31□□□□□ -0.28
MCF2L-227ENST00000486806 PPIP5K1Q6PFW1 1433 aa13.3□□□□□ -0.28
MCF2L-227ENST00000486806 CD163L1Q9NR16 1453 aa13.3□□□□□ -0.28
MCF2L-227ENST00000486806 NUDT16Q96DE0 195 aaKnown RBP13.3□□□□□ -0.28
MCF2L-227ENST00000486806 ATF3P18847 181 aa13.29□□□□□ -0.28
MCF2L-227ENST00000486806 CCDC61Q9Y6R9 512 aa13.29□□□□□ -0.28
MCF2L-227ENST00000486806 ITSN1Q15811 1721 aa13.29□□□□□ -0.28
MCF2L-227ENST00000486806 POLR3GLQ9BT43 218 aa13.28□□□□□ -0.28
MCF2L-227ENST00000486806 ANKRD36BQ8N2N9 1353 aa13.28□□□□□ -0.28
MCF2L-227ENST00000486806 NUTM2FA1L443 756 aa13.27□□□□□ -0.29
MCF2L-227ENST00000486806 POLR3AO14802 1390 aaPredicted RBP13.27□□□□□ -0.29
MCF2L-227ENST00000486806 CPSF1Q10570 1443 aaKnown RBP13.27□□□□□ -0.29
MCF2L-227ENST00000486806 A0A1W2PP64 1363 aa13.26□□□□□ -0.29
MCF2L-227ENST00000486806 PLEKHG3A1L390 1219 aa13.26□□□□□ -0.29
MCF2L-227ENST00000486806 KIF1AQ12756 1690 aa13.26□□□□□ -0.29
MCF2L-227ENST00000486806 SLC12A5Q9H2X9 1139 aa13.26□□□□□ -0.29
MCF2L-227ENST00000486806 CABP1Q9NZU7 370 aa13.26□□□□□ -0.29
MCF2L-227ENST00000486806 NRKQ7Z2Y5 1582 aa13.24□□□□□ -0.29
MCF2L-227ENST00000486806 CERKQ8TCT0 537 aa13.24□□□□□ -0.29
MCF2L-227ENST00000486806 TMC1Q8TDI8 760 aa13.24□□□□□ -0.29
MCF2L-227ENST00000486806 RGPD8O14715 1765 aaPredicted RBP13.24□□□□□ -0.29
MCF2L-227ENST00000486806 MON2Q7Z3U7 1717 aa13.23□□□□□ -0.29
MCF2L-227ENST00000486806 DDX10Q13206 875 aaKnown RBP13.23□□□□□ -0.29
MCF2L-227ENST00000486806 ORAI2Q96SN7 254 aa13.23□□□□□ -0.29
MCF2L-227ENST00000486806 SLAIN2Q9P270 581 aa13.23□□□□□ -0.29
MCF2L-227ENST00000486806 PHF8Q9UPP1 1060 aa13.23□□□□□ -0.29
MCF2L-227ENST00000486806 USP6P35125 1406 aa13.22□□□□□ -0.29
MCF2L-227ENST00000486806 SSH2Q76I76 1423 aa13.22□□□□□ -0.29
MCF2L-227ENST00000486806 AKAP12Q02952 1782 aa13.22□□□□□ -0.29
MCF2L-227ENST00000486806 ACEP12821 1306 aa13.22□□□□□ -0.29
MCF2L-227ENST00000486806 ESCO1Q5FWF5 840 aa13.22□□□□□ -0.29
MCF2L-227ENST00000486806 BRINP3Q76B58 766 aa13.22□□□□□ -0.29
MCF2L-227ENST00000486806 PANK3Q9H999 370 aa13.22□□□□□ -0.29
MCF2L-227ENST00000486806 NSD3Q9BZ95 1437 aa13.22□□□□□ -0.29
MCF2L-227ENST00000486806 PER1O15534 1290 aaPredicted RBP13.21□□□□□ -0.29
MCF2L-227ENST00000486806 CARD14Q9BXL6 1004 aa13.21□□□□□ -0.29
MCF2L-227ENST00000486806 TERF2IPQ9NYB0 399 aa13.21□□□□□ -0.29
MCF2L-227ENST00000486806 EDC4Q6P2E9 1401 aaKnown RBP13.21□□□□□ -0.3
MCF2L-227ENST00000486806 HDGFL2Q7Z4V5 671 aaPredicted RBP13.2□□□□□ -0.3
MCF2L-227ENST00000486806 PMFBP1Q8TBY8 1022 aa13.2□□□□□ -0.3
MCF2L-227ENST00000486806 KTN1Q86UP2 1357 aaKnown RBP13.2□□□□□ -0.3
MCF2L-227ENST00000486806 ROBO1Q9Y6N7 1651 aa13.19□□□□□ -0.3
MCF2L-227ENST00000486806 PXDNQ92626 1479 aa13.19□□□□□ -0.3
MCF2L-227ENST00000486806 NHSL1Q5SYE7 1610 aa13.19□□□□□ -0.3
MCF2L-227ENST00000486806 BRD4O60885 1362 aaPredicted RBP13.19□□□□□ -0.3
MCF2L-227ENST00000486806 AHDC1Q5TGY3 1603 aaPredicted RBP13.18□□□□□ -0.3
MCF2L-227ENST00000486806 NGDNQ8NEJ9 315 aaKnown RBP13.18□□□□□ -0.3
MCF2L-227ENST00000486806 ZNF692Q9BU19 519 aaPredicted RBP13.18□□□□□ -0.3
MCF2L-227ENST00000486806 TRPM3Q9HCF6 1732 aaPredicted RBP13.17□□□□□ -0.3
MCF2L-227ENST00000486806 TOM1O60784 492 aa13.17□□□□□ -0.3
MCF2L-227ENST00000486806 NPC1L1Q9UHC9 1359 aa13.17□□□□□ -0.3
MCF2L-227ENST00000486806 NPHP3Q7Z494 1330 aa13.16□□□□□ -0.3
MCF2L-227ENST00000486806 FOXO3O43524 673 aa13.16□□□□□ -0.3
MCF2L-227ENST00000486806 AMER1Q5JTC6 1135 aaPredicted RBP13.16□□□□□ -0.3
MCF2L-227ENST00000486806 UBAP1LF5GYI3 381 aa13.15□□□□□ -0.3
MCF2L-227ENST00000486806 SBNO1A3KN83 1393 aa13.15□□□□□ -0.3
MCF2L-227ENST00000486806 NSD2O96028 1365 aa13.15□□□□□ -0.3
MCF2L-227ENST00000486806 PIK3C2AO00443 1686 aa13.15□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms