RNA–Protein interactions for RNA: ENST00000486572.1

COL1A1-207, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 3

Gene COL1A1, Length 836 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-207ENST00000486572 C1orf167Q5SNV9 1468 aa26.23■■□□□ 1.79
COL1A1-207ENST00000486572 PHLPP1O60346 1717 aa26.22■■□□□ 1.79
COL1A1-207ENST00000486572 PRAM1Q96QH2 718 aa26.22■■□□□ 1.79
COL1A1-207ENST00000486572 TRAK1Q9UPV9 953 aa26.22■■□□□ 1.79
COL1A1-207ENST00000486572 AHDC1Q5TGY3 1603 aaPredicted RBP26.21■■□□□ 1.79
COL1A1-207ENST00000486572 POGKQ9P215 609 aa26.19■■□□□ 1.78
COL1A1-207ENST00000486572 TONSLQ96HA7 1378 aa26.19■■□□□ 1.78
COL1A1-207ENST00000486572 ARHGEF28Q8N1W1 1705 aaKnown RBP26.18■■□□□ 1.78
COL1A1-207ENST00000486572 COL16A1Q07092 1604 aaPredicted RBP26.17■■□□□ 1.78
COL1A1-207ENST00000486572 SAFB2Q14151 953 aaKnown RBP eCLIP26.16■■□□□ 1.78
COL1A1-207ENST00000486572 FMN2Q9NZ56 1722 aa26.16■■□□□ 1.78
COL1A1-207ENST00000486572 ADGRB2O60241 1585 aa26.16■■□□□ 1.78
COL1A1-207ENST00000486572 NHSL1Q5SYE7 1610 aa26.15■■□□□ 1.78
COL1A1-207ENST00000486572 TRPM1Q7Z4N2 1603 aa26.15■■□□□ 1.78
COL1A1-207ENST00000486572 NBPF1Q3BBV0 1214 aa26.15■■□□□ 1.78
COL1A1-207ENST00000486572 ORAI2Q96SN7 254 aa26.11■■□□□ 1.77
COL1A1-207ENST00000486572 MED1Q15648 1581 aaPredicted RBP26.11■■□□□ 1.77
COL1A1-207ENST00000486572 NUTM2FA1L443 756 aa26.08■■□□□ 1.77
COL1A1-207ENST00000486572 MINK1Q8N4C8 1332 aaPredicted RBP26.08■■□□□ 1.77
COL1A1-207ENST00000486572 CLSPNQ9HAW4 1339 aa26.08■■□□□ 1.77
COL1A1-207ENST00000486572 JCADQ9P266 1359 aa26.07■■□□□ 1.76
COL1A1-207ENST00000486572 ESCO1Q5FWF5 840 aa26.07■■□□□ 1.76
COL1A1-207ENST00000486572 ROCK2O75116 1388 aaKnown RBP26.07■■□□□ 1.76
COL1A1-207ENST00000486572 NBPF8Q3BBV2 869 aa26.05■■□□□ 1.76
COL1A1-207ENST00000486572 HIRIP3Q9BW71 556 aaPredicted RBP26.05■■□□□ 1.76
COL1A1-207ENST00000486572 DISP3Q9P2K9 1392 aa26.05■■□□□ 1.76
COL1A1-207ENST00000486572 DDX17Q92841 729 aaKnown RBP26.04■■□□□ 1.76
COL1A1-207ENST00000486572 ANKARQ7Z5J8 1434 aa26.04■■□□□ 1.76
COL1A1-207ENST00000486572 KIF1AQ12756 1690 aa26.03■■□□□ 1.76
COL1A1-207ENST00000486572 EIF3AQ14152 1382 aaKnown RBP26.03■■□□□ 1.76
COL1A1-207ENST00000486572 SHPRHQ149N8 1683 aa26.03■■□□□ 1.76
COL1A1-207ENST00000486572 GPRASP1Q5JY77 1395 aa26.01■■□□□ 1.75
COL1A1-207ENST00000486572 RALGAPBQ86X10 1494 aa26.01■■□□□ 1.75
COL1A1-207ENST00000486572 USP32Q8NFA0 1604 aa26.01■■□□□ 1.75
COL1A1-207ENST00000486572 TULP4Q9NRJ4 1543 aa26.01■■□□□ 1.75
COL1A1-207ENST00000486572 NPHP3Q7Z494 1330 aa26■■□□□ 1.75
COL1A1-207ENST00000486572 WASLO00401 505 aaPredicted RBP26■■□□□ 1.75
COL1A1-207ENST00000486572 RGPD8O14715 1765 aaPredicted RBP26■■□□□ 1.75
COL1A1-207ENST00000486572 SOS2Q07890 1332 aaPredicted RBP25.99■■□□□ 1.75
COL1A1-207ENST00000486572 CENPJQ9HC77 1338 aaPredicted RBP25.99■■□□□ 1.75
COL1A1-207ENST00000486572 LRRC59Q96AG4 307 aaKnown RBP25.99■■□□□ 1.75
COL1A1-207ENST00000486572 QRICH2Q9H0J4 1663 aa25.98■■□□□ 1.75
COL1A1-207ENST00000486572 PXDNQ92626 1479 aa25.97■■□□□ 1.75
COL1A1-207ENST00000486572 SPATA31A6Q5VVP1 1343 aa25.96■■□□□ 1.75
COL1A1-207ENST00000486572 FOXO3O43524 673 aa25.96■■□□□ 1.75
COL1A1-207ENST00000486572 CCER1Q8TC90 406 aaPredicted RBP25.96■■□□□ 1.75
COL1A1-207ENST00000486572 PHF8Q9UPP1 1060 aa25.95■■□□□ 1.74
COL1A1-207ENST00000486572 PRR36Q9H6K5 1346 aa25.93■■□□□ 1.74
COL1A1-207ENST00000486572 TIMELESSQ9UNS1 1208 aa25.93■■□□□ 1.74
COL1A1-207ENST00000486572 PNPLA6Q8IY17 1366 aa25.93■■□□□ 1.74
COL1A1-207ENST00000486572 ATP7BP35670 1465 aa25.92■■□□□ 1.74
COL1A1-207ENST00000486572 CARD11Q9BXL7 1154 aa25.92■■□□□ 1.74
COL1A1-207ENST00000486572 ITSN1Q15811 1721 aa25.91■■□□□ 1.74
COL1A1-207ENST00000486572 LRP6O75581 1613 aa25.9■■□□□ 1.74
COL1A1-207ENST00000486572 XPCQ01831 940 aaPredicted RBP25.9■■□□□ 1.74
COL1A1-207ENST00000486572 PHF23Q9BUL5 403 aaPredicted RBP25.9■■□□□ 1.74
COL1A1-207ENST00000486572 CDK19Q9BWU1 502 aa25.9■■□□□ 1.74
COL1A1-207ENST00000486572 PMFBP1Q8TBY8 1022 aa25.87■■□□□ 1.73
COL1A1-207ENST00000486572 NUDT16Q96DE0 195 aaKnown RBP25.87■■□□□ 1.73
COL1A1-207ENST00000486572 TOPAZ1Q8N9V7 1692 aa25.87■■□□□ 1.73
COL1A1-207ENST00000486572 COL22A1Q8NFW1 1626 aaPredicted RBP25.85■■□□□ 1.73
COL1A1-207ENST00000486572 KRT28Q7Z3Y7 464 aa25.85■■□□□ 1.73
COL1A1-207ENST00000486572 NUTM2BA6NNL0 878 aaPredicted RBP25.83■■□□□ 1.73
COL1A1-207ENST00000486572 NUTM2EB1AL46 878 aaPredicted RBP25.83■■□□□ 1.73
COL1A1-207ENST00000486572 SRPK2P78362 688 aaKnown RBP25.83■■□□□ 1.73
COL1A1-207ENST00000486572 PSME1Q06323 249 aa25.83■■□□□ 1.73
COL1A1-207ENST00000486572 NUTM2AQ8IVF1 878 aaPredicted RBP25.83■■□□□ 1.73
COL1A1-207ENST00000486572 SBNO2Q9Y2G9 1366 aa25.82■■□□□ 1.72
COL1A1-207ENST00000486572 TNS3Q68CZ2 1445 aa25.81■■□□□ 1.72
COL1A1-207ENST00000486572 MEX3CQ5U5Q3 659 aaKnown RBP25.81■■□□□ 1.72
COL1A1-207ENST00000486572 CCDC61Q9Y6R9 512 aa25.81■■□□□ 1.72
COL1A1-207ENST00000486572 SPATA31A3Q5VYP0 1347 aa25.81■■□□□ 1.72
COL1A1-207ENST00000486572 EVC2Q86UK5 1308 aa25.81■■□□□ 1.72
COL1A1-207ENST00000486572 SBNO1A3KN83 1393 aa25.81■■□□□ 1.72
COL1A1-207ENST00000486572 NGDNQ8NEJ9 315 aaKnown RBP25.79■■□□□ 1.72
COL1A1-207ENST00000486572 CABP2Q9NPB3 220 aa25.79■■□□□ 1.72
COL1A1-207ENST00000486572 TRPM3Q9HCF6 1732 aaPredicted RBP25.78■■□□□ 1.72
COL1A1-207ENST00000486572 RGS17Q9UGC6 210 aaPredicted RBP25.76■■□□□ 1.71
COL1A1-207ENST00000486572 POLR3AO14802 1390 aaPredicted RBP25.76■■□□□ 1.71
COL1A1-207ENST00000486572 PPIP5K1Q6PFW1 1433 aa25.76■■□□□ 1.71
COL1A1-207ENST00000486572 ARHGEF10O15013 1369 aa25.74■■□□□ 1.71
COL1A1-207ENST00000486572 PLEKHG3A1L390 1219 aa25.74■■□□□ 1.71
COL1A1-207ENST00000486572 ILDR2Q71H61 639 aa25.73■■□□□ 1.71
COL1A1-207ENST00000486572 ACEP12821 1306 aa25.72■■□□□ 1.71
COL1A1-207ENST00000486572 ALS2Q96Q42 1657 aa25.71■■□□□ 1.71
COL1A1-207ENST00000486572 USP47Q96K76 1375 aa25.7■■□□□ 1.71
COL1A1-207ENST00000486572 ADAMTS2O95450 1211 aa25.7■■□□□ 1.7
COL1A1-207ENST00000486572 LMOD2Q6P5Q4 547 aa25.7■■□□□ 1.7
COL1A1-207ENST00000486572 ATAD2Q6PL18 1390 aa25.69■■□□□ 1.7
COL1A1-207ENST00000486572 ST20-MTHFSA0A0A6YYL1 179 aa25.68■■□□□ 1.7
COL1A1-207ENST00000486572 C8orf37Q96NL8 207 aa25.68■■□□□ 1.7
COL1A1-207ENST00000486572 ABCA3Q99758 1704 aa25.67■■□□□ 1.7
COL1A1-207ENST00000486572 CABP1Q9NZU7 370 aa25.67■■□□□ 1.7
COL1A1-207ENST00000486572 PAK3O75914 559 aaPredicted RBP25.66■■□□□ 1.7
COL1A1-207ENST00000486572 ZNF772Q68DY9 489 aaPredicted RBP25.66■■□□□ 1.7
COL1A1-207ENST00000486572 MARF1Q9Y4F3 1742 aaKnown RBP25.66■■□□□ 1.7
COL1A1-207ENST00000486572 AFF2P51816 1311 aa25.65■■□□□ 1.7
COL1A1-207ENST00000486572 TESK2Q96S53 571 aa25.65■■□□□ 1.7
COL1A1-207ENST00000486572 POTEAQ6S8J7 498 aa25.64■■□□□ 1.7
COL1A1-207ENST00000486572 SLC24A1O60721 1099 aa25.63■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms