RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 SOCS7O14512 581 aa25.67■■□□□ 1.7
COL6A1-204ENST00000486023 POGKQ9P215 609 aa25.67■■□□□ 1.7
COL6A1-204ENST00000486023 RGS17Q9UGC6 210 aaPredicted RBP25.67■■□□□ 1.7
COL6A1-204ENST00000486023 TRAK1Q9UPV9 953 aa25.66■■□□□ 1.7
COL6A1-204ENST00000486023 COL16A1Q07092 1604 aaPredicted RBP25.66■■□□□ 1.7
COL6A1-204ENST00000486023 PRAG1Q86YV5 1406 aa25.65■■□□□ 1.7
COL6A1-204ENST00000486023 LRRC59Q96AG4 307 aaKnown RBP25.65■■□□□ 1.7
COL6A1-204ENST00000486023 PRAM1Q96QH2 718 aa25.65■■□□□ 1.7
COL6A1-204ENST00000486023 NRXN1Q9ULB1 1477 aa25.65■■□□□ 1.7
COL6A1-204ENST00000486023 AHDC1Q5TGY3 1603 aaPredicted RBP25.64■■□□□ 1.7
COL6A1-204ENST00000486023 TECPR2O15040 1411 aa25.63■■□□□ 1.69
COL6A1-204ENST00000486023 SPATA31A6Q5VVP1 1343 aa25.62■■□□□ 1.69
COL6A1-204ENST00000486023 NEUROD1Q13562 356 aa25.6■■□□□ 1.69
COL6A1-204ENST00000486023 SIRT1Q96EB6 747 aa25.6■■□□□ 1.69
COL6A1-204ENST00000486023 XPCQ01831 940 aaPredicted RBP25.59■■□□□ 1.69
COL6A1-204ENST00000486023 STAC3Q96MF2 364 aa25.59■■□□□ 1.69
COL6A1-204ENST00000486023 FOXO3O43524 673 aa25.58■■□□□ 1.69
COL6A1-204ENST00000486023 SIN3AQ96ST3 1273 aa25.58■■□□□ 1.69
COL6A1-204ENST00000486023 POTEAQ6S8J7 498 aa25.57■■□□□ 1.68
COL6A1-204ENST00000486023 HIRIP3Q9BW71 556 aaPredicted RBP25.57■■□□□ 1.68
COL6A1-204ENST00000486023 LRP6O75581 1613 aa25.53■■□□□ 1.68
COL6A1-204ENST00000486023 LAMC1P11047 1609 aa25.53■■□□□ 1.68
COL6A1-204ENST00000486023 MINK1Q8N4C8 1332 aaPredicted RBP25.53■■□□□ 1.68
COL6A1-204ENST00000486023 CDC42BPGQ6DT37 1551 aa25.52■■□□□ 1.68
COL6A1-204ENST00000486023 TRIM26Q12899 539 aaPredicted RBP25.52■■□□□ 1.68
COL6A1-204ENST00000486023 SOS2Q07890 1332 aaPredicted RBP25.52■■□□□ 1.68
COL6A1-204ENST00000486023 NPHP3Q7Z494 1330 aa25.52■■□□□ 1.68
COL6A1-204ENST00000486023 NHSL1Q5SYE7 1610 aa25.52■■□□□ 1.68
COL6A1-204ENST00000486023 KNDC1Q76NI1 1749 aa25.51■■□□□ 1.68
COL6A1-204ENST00000486023 ADAMTS2O95450 1211 aa25.51■■□□□ 1.67
COL6A1-204ENST00000486023 PNPLA6Q8IY17 1366 aa25.5■■□□□ 1.67
COL6A1-204ENST00000486023 C8orf37Q96NL8 207 aa25.49■■□□□ 1.67
COL6A1-204ENST00000486023 ADGRB1O14514 1584 aa25.48■■□□□ 1.67
COL6A1-204ENST00000486023 L3MBTL2Q969R5 705 aa25.48■■□□□ 1.67
COL6A1-204ENST00000486023 PLEKHG5O94827 1062 aa25.47■■□□□ 1.67
COL6A1-204ENST00000486023 NBPF1Q3BBV0 1214 aa25.47■■□□□ 1.67
COL6A1-204ENST00000486023 PHF8Q9UPP1 1060 aa25.47■■□□□ 1.67
COL6A1-204ENST00000486023 SHPRHQ149N8 1683 aa25.47■■□□□ 1.67
COL6A1-204ENST00000486023 ZNF772Q68DY9 489 aaPredicted RBP25.45■■□□□ 1.66
COL6A1-204ENST00000486023 KRT28Q7Z3Y7 464 aa25.45■■□□□ 1.66
COL6A1-204ENST00000486023 PMFBP1Q8TBY8 1022 aa25.45■■□□□ 1.66
COL6A1-204ENST00000486023 DLC1Q96QB1 1528 aa25.43■■□□□ 1.66
COL6A1-204ENST00000486023 AFF2P51816 1311 aa25.42■■□□□ 1.66
COL6A1-204ENST00000486023 PSME1Q06323 249 aa25.42■■□□□ 1.66
COL6A1-204ENST00000486023 NGLY1Q96IV0 654 aa25.42■■□□□ 1.66
COL6A1-204ENST00000486023 LMOD2Q6P5Q4 547 aa25.41■■□□□ 1.66
COL6A1-204ENST00000486023 WASLO00401 505 aaPredicted RBP25.4■■□□□ 1.66
COL6A1-204ENST00000486023 FMN2Q9NZ56 1722 aa25.4■■□□□ 1.66
COL6A1-204ENST00000486023 PXDNQ92626 1479 aa25.37■■□□□ 1.65
COL6A1-204ENST00000486023 RXRBP28702 533 aa25.34■■□□□ 1.65
COL6A1-204ENST00000486023 HAP1P54257 671 aaPredicted RBP25.34■■□□□ 1.65
COL6A1-204ENST00000486023 CDK19Q9BWU1 502 aa25.34■■□□□ 1.65
COL6A1-204ENST00000486023 SPATA31A3Q5VYP0 1347 aa25.34■■□□□ 1.65
COL6A1-204ENST00000486023 PRR36Q9H6K5 1346 aa25.34■■□□□ 1.65
COL6A1-204ENST00000486023 NGDNQ8NEJ9 315 aaKnown RBP25.33■■□□□ 1.65
COL6A1-204ENST00000486023 QTRT2Q9H974 415 aaKnown RBP25.33■■□□□ 1.65
COL6A1-204ENST00000486023 NUDT16Q96DE0 195 aaKnown RBP25.31■■□□□ 1.64
COL6A1-204ENST00000486023 EIF3AQ14152 1382 aaKnown RBP25.31■■□□□ 1.64
COL6A1-204ENST00000486023 ANKARQ7Z5J8 1434 aa25.3■■□□□ 1.64
COL6A1-204ENST00000486023 CABLES1Q8TDN4 633 aa25.3■■□□□ 1.64
COL6A1-204ENST00000486023 USP21Q9UK80 565 aa25.3■■□□□ 1.64
COL6A1-204ENST00000486023 RGPD8O14715 1765 aaPredicted RBP25.3■■□□□ 1.64
COL6A1-204ENST00000486023 PAK3O75914 559 aaPredicted RBP25.28■■□□□ 1.64
COL6A1-204ENST00000486023 KIF1AQ12756 1690 aa25.28■■□□□ 1.64
COL6A1-204ENST00000486023 CENPJQ9HC77 1338 aaPredicted RBP25.27■■□□□ 1.64
COL6A1-204ENST00000486023 GPRASP1Q5JY77 1395 aa25.27■■□□□ 1.64
COL6A1-204ENST00000486023 ADGRB2O60241 1585 aa25.27■■□□□ 1.64
COL6A1-204ENST00000486023 SRPK2P78362 688 aaKnown RBP25.26■■□□□ 1.63
COL6A1-204ENST00000486023 ARHGEF28Q8N1W1 1705 aaKnown RBP25.25■■□□□ 1.63
COL6A1-204ENST00000486023 USP32Q8NFA0 1604 aa25.24■■□□□ 1.63
COL6A1-204ENST00000486023 TULP4Q9NRJ4 1543 aa25.24■■□□□ 1.63
COL6A1-204ENST00000486023 TNS3Q68CZ2 1445 aa25.24■■□□□ 1.63
COL6A1-204ENST00000486023 ROCK2O75116 1388 aaKnown RBP25.24■■□□□ 1.63
COL6A1-204ENST00000486023 TONSLQ96HA7 1378 aa25.24■■□□□ 1.63
COL6A1-204ENST00000486023 NBPF8Q3BBV2 869 aa25.24■■□□□ 1.63
COL6A1-204ENST00000486023 KIAA1210Q9ULL0 1709 aa25.23■■□□□ 1.63
COL6A1-204ENST00000486023 CABP2Q9NPB3 220 aa25.23■■□□□ 1.63
COL6A1-204ENST00000486023 RBM6P78332 1123 aaKnown RBP25.22■■□□□ 1.63
COL6A1-204ENST00000486023 SBNO1A3KN83 1393 aa25.21■■□□□ 1.63
COL6A1-204ENST00000486023 FNBP4Q8N3X1 1017 aaPredicted RBP25.21■■□□□ 1.63
COL6A1-204ENST00000486023 COL22A1Q8NFW1 1626 aaPredicted RBP25.2■■□□□ 1.62
COL6A1-204ENST00000486023 TRPC5Q9UL62 973 aaPredicted RBP25.2■■□□□ 1.62
COL6A1-204ENST00000486023 CCDC61Q9Y6R9 512 aa25.2■■□□□ 1.62
COL6A1-204ENST00000486023 ARHGEF10O15013 1369 aa25.18■■□□□ 1.62
COL6A1-204ENST00000486023 PCGF6Q9BYE7 350 aa25.18■■□□□ 1.62
COL6A1-204ENST00000486023 ACEP12821 1306 aa25.16■■□□□ 1.62
COL6A1-204ENST00000486023 ATP7BP35670 1465 aa25.16■■□□□ 1.62
COL6A1-204ENST00000486023 NUTM2GQ5VZR2 741 aa25.15■■□□□ 1.62
COL6A1-204ENST00000486023 CARD11Q9BXL7 1154 aa25.15■■□□□ 1.62
COL6A1-204ENST00000486023 PLEKHG3A1L390 1219 aa25.11■■□□□ 1.61
COL6A1-204ENST00000486023 UNC5CLQ8IV45 518 aa25.11■■□□□ 1.61
COL6A1-204ENST00000486023 CABP1Q9NZU7 370 aa25.11■■□□□ 1.61
COL6A1-204ENST00000486023 CCDC9Q9Y3X0 531 aaKnown RBP25.11■■□□□ 1.61
COL6A1-204ENST00000486023 TRPM1Q7Z4N2 1603 aa25.11■■□□□ 1.61
COL6A1-204ENST00000486023 EVC2Q86UK5 1308 aa25.11■■□□□ 1.61
COL6A1-204ENST00000486023 BCL9LQ86UU0 1499 aa25.1■■□□□ 1.61
COL6A1-204ENST00000486023 FAM83GA6ND36 823 aa25.09■■□□□ 1.61
COL6A1-204ENST00000486023 PPIP5K1Q6PFW1 1433 aa25.09■■□□□ 1.61
COL6A1-204ENST00000486023 GJD4Q96KN9 370 aaPredicted RBP25.08■■□□□ 1.61
COL6A1-204ENST00000486023 RGS12O14924 1447 aa25.07■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms