RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 UPF1Q92900 1129 aaKnown RBP eCLIP24.66■■□□□ 1.54
VIM-205ENST00000485947 LRRC59Q96AG4 307 aaKnown RBP24.66■■□□□ 1.54
VIM-205ENST00000485947 TMEM132EQ6IEE7 984 aa24.65■■□□□ 1.54
VIM-205ENST00000485947 STK26Q9P289 416 aa24.65■■□□□ 1.54
VIM-205ENST00000485947 KNDC1Q76NI1 1749 aa24.64■■□□□ 1.54
VIM-205ENST00000485947 CDC42BPGQ6DT37 1551 aa24.64■■□□□ 1.54
VIM-205ENST00000485947 ZEB1P37275 1124 aaPredicted RBP24.63■■□□□ 1.53
VIM-205ENST00000485947 CFAP70Q5T0N1 1121 aa24.63■■□□□ 1.53
VIM-205ENST00000485947 NHSL1Q5SYE7 1610 aa24.61■■□□□ 1.53
VIM-205ENST00000485947 DCAF11Q8TEB1 546 aa24.6■■□□□ 1.53
VIM-205ENST00000485947 SHPRHQ149N8 1683 aa24.59■■□□□ 1.53
VIM-205ENST00000485947 WAPLQ7Z5K2 1190 aa24.59■■□□□ 1.53
VIM-205ENST00000485947 SRCAPQ6ZRS2 3230 aa24.57■■□□□ 1.52
VIM-205ENST00000485947 SOS2Q07890 1332 aaPredicted RBP24.57■■□□□ 1.52
VIM-205ENST00000485947 DLC1Q96QB1 1528 aa24.56■■□□□ 1.52
VIM-205ENST00000485947 LRP6O75581 1613 aa24.55■■□□□ 1.52
VIM-205ENST00000485947 ORAI2Q96SN7 254 aa24.55■■□□□ 1.52
VIM-205ENST00000485947 KDM2AQ9Y2K7 1162 aa24.54■■□□□ 1.52
VIM-205ENST00000485947 NPHP3Q7Z494 1330 aa24.54■■□□□ 1.52
VIM-205ENST00000485947 PLEKHH1Q9ULM0 1364 aa24.54■■□□□ 1.52
VIM-205ENST00000485947 ADGRB1O14514 1584 aa24.53■■□□□ 1.52
VIM-205ENST00000485947 ESCO1Q5FWF5 840 aa24.52■■□□□ 1.52
VIM-205ENST00000485947 ZNF772Q68DY9 489 aaPredicted RBP24.51■■□□□ 1.51
VIM-205ENST00000485947 MEX3CQ5U5Q3 659 aaKnown RBP24.5■■□□□ 1.51
VIM-205ENST00000485947 PRAM1Q96QH2 718 aa24.5■■□□□ 1.51
VIM-205ENST00000485947 PNPLA6Q8IY17 1366 aa24.5■■□□□ 1.51
VIM-205ENST00000485947 POGKQ9P215 609 aa24.49■■□□□ 1.51
VIM-205ENST00000485947 DDX17Q92841 729 aaKnown RBP24.47■■□□□ 1.51
VIM-205ENST00000485947 FMN2Q9NZ56 1722 aa24.44■■□□□ 1.5
VIM-205ENST00000485947 EIF3AQ14152 1382 aaKnown RBP24.44■■□□□ 1.5
VIM-205ENST00000485947 FOXO3O43524 673 aa24.43■■□□□ 1.5
VIM-205ENST00000485947 TRAK1Q9UPV9 953 aa24.43■■□□□ 1.5
VIM-205ENST00000485947 CDK12Q9NYV4 1490 aaPredicted RBP24.43■■□□□ 1.5
VIM-205ENST00000485947 ANKARQ7Z5J8 1434 aa24.43■■□□□ 1.5
VIM-205ENST00000485947 NUTM2BA6NNL0 878 aaPredicted RBP24.42■■□□□ 1.5
VIM-205ENST00000485947 NUTM2EB1AL46 878 aaPredicted RBP24.42■■□□□ 1.5
VIM-205ENST00000485947 NUTM2AQ8IVF1 878 aaPredicted RBP24.42■■□□□ 1.5
VIM-205ENST00000485947 ADGRB2O60241 1585 aa24.42■■□□□ 1.5
VIM-205ENST00000485947 PXDNQ92626 1479 aa24.41■■□□□ 1.5
VIM-205ENST00000485947 RXRBP28702 533 aa24.41■■□□□ 1.5
VIM-205ENST00000485947 KIF1AQ12756 1690 aa24.4■■□□□ 1.5
VIM-205ENST00000485947 KIAA1210Q9ULL0 1709 aa24.39■■□□□ 1.5
VIM-205ENST00000485947 NUTM2FA1L443 756 aa24.39■■□□□ 1.49
VIM-205ENST00000485947 SAFB2Q14151 953 aaKnown RBP eCLIP24.38■■□□□ 1.49
VIM-205ENST00000485947 PHF8Q9UPP1 1060 aa24.38■■□□□ 1.49
VIM-205ENST00000485947 PSME1Q06323 249 aa24.37■■□□□ 1.49
VIM-205ENST00000485947 TIMELESSQ9UNS1 1208 aa24.36■■□□□ 1.49
VIM-205ENST00000485947 COL22A1Q8NFW1 1626 aaPredicted RBP24.35■■□□□ 1.49
VIM-205ENST00000485947 WASLO00401 505 aaPredicted RBP24.34■■□□□ 1.49
VIM-205ENST00000485947 KRT28Q7Z3Y7 464 aa24.33■■□□□ 1.49
VIM-205ENST00000485947 AFF2P51816 1311 aa24.33■■□□□ 1.48
VIM-205ENST00000485947 SPATA31A3Q5VYP0 1347 aa24.33■■□□□ 1.48
VIM-205ENST00000485947 SIN3AQ96ST3 1273 aa24.32■■□□□ 1.48
VIM-205ENST00000485947 MINK1Q8N4C8 1332 aaPredicted RBP24.32■■□□□ 1.48
VIM-205ENST00000485947 SBNO1A3KN83 1393 aa24.31■■□□□ 1.48
VIM-205ENST00000485947 L3MBTL2Q969R5 705 aa24.31■■□□□ 1.48
VIM-205ENST00000485947 C8orf37Q96NL8 207 aa24.31■■□□□ 1.48
VIM-205ENST00000485947 NGLY1Q96IV0 654 aa24.3■■□□□ 1.48
VIM-205ENST00000485947 TULP4Q9NRJ4 1543 aa24.3■■□□□ 1.48
VIM-205ENST00000485947 XPCQ01831 940 aaPredicted RBP24.29■■□□□ 1.48
VIM-205ENST00000485947 ADAMTS2O95450 1211 aa24.28■■□□□ 1.48
VIM-205ENST00000485947 NEUROD1Q13562 356 aa24.28■■□□□ 1.48
VIM-205ENST00000485947 FNBP4Q8N3X1 1017 aaPredicted RBP24.28■■□□□ 1.48
VIM-205ENST00000485947 HIRIP3Q9BW71 556 aaPredicted RBP24.28■■□□□ 1.48
VIM-205ENST00000485947 ARHGEF28Q8N1W1 1705 aaKnown RBP24.27■■□□□ 1.48
VIM-205ENST00000485947 ARHGEF10O15013 1369 aa24.27■■□□□ 1.48
VIM-205ENST00000485947 NBPF1Q3BBV0 1214 aa24.26■■□□□ 1.47
VIM-205ENST00000485947 TONSLQ96HA7 1378 aa24.26■■□□□ 1.47
VIM-205ENST00000485947 RGS12O14924 1447 aa24.26■■□□□ 1.47
VIM-205ENST00000485947 TNS3Q68CZ2 1445 aa24.26■■□□□ 1.47
VIM-205ENST00000485947 GPRASP1Q5JY77 1395 aa24.25■■□□□ 1.47
VIM-205ENST00000485947 USP32Q8NFA0 1604 aa24.24■■□□□ 1.47
VIM-205ENST00000485947 RBM6P78332 1123 aaKnown RBP24.24■■□□□ 1.47
VIM-205ENST00000485947 QTRT2Q9H974 415 aaKnown RBP24.24■■□□□ 1.47
VIM-205ENST00000485947 PRR36Q9H6K5 1346 aa24.23■■□□□ 1.47
VIM-205ENST00000485947 RGPD8O14715 1765 aaPredicted RBP24.22■■□□□ 1.47
VIM-205ENST00000485947 PMFBP1Q8TBY8 1022 aa24.22■■□□□ 1.47
VIM-205ENST00000485947 NUDT16Q96DE0 195 aaKnown RBP24.21■■□□□ 1.47
VIM-205ENST00000485947 USP21Q9UK80 565 aa24.21■■□□□ 1.47
VIM-205ENST00000485947 TRPC5Q9UL62 973 aaPredicted RBP24.21■■□□□ 1.47
VIM-205ENST00000485947 CENPJQ9HC77 1338 aaPredicted RBP24.2■■□□□ 1.46
VIM-205ENST00000485947 CDK19Q9BWU1 502 aa24.2■■□□□ 1.46
VIM-205ENST00000485947 CCDC61Q9Y6R9 512 aa24.19■■□□□ 1.46
VIM-205ENST00000485947 NGDNQ8NEJ9 315 aaKnown RBP24.18■■□□□ 1.46
VIM-205ENST00000485947 ATP7BP35670 1465 aa24.18■■□□□ 1.46
VIM-205ENST00000485947 PLEKHG3A1L390 1219 aa24.15■■□□□ 1.46
VIM-205ENST00000485947 HAP1P54257 671 aaPredicted RBP24.15■■□□□ 1.46
VIM-205ENST00000485947 ITSN1Q15811 1721 aa24.15■■□□□ 1.46
VIM-205ENST00000485947 POLR3AO14802 1390 aaPredicted RBP24.14■■□□□ 1.45
VIM-205ENST00000485947 ROCK2O75116 1388 aaKnown RBP24.14■■□□□ 1.45
VIM-205ENST00000485947 MARF1Q9Y4F3 1742 aaKnown RBP24.13■■□□□ 1.45
VIM-205ENST00000485947 ATRNO75882 1429 aa24.13■■□□□ 1.45
VIM-205ENST00000485947 BCL9LQ86UU0 1499 aa24.13■■□□□ 1.45
VIM-205ENST00000485947 LMOD2Q6P5Q4 547 aa24.12■■□□□ 1.45
VIM-205ENST00000485947 TRPM1Q7Z4N2 1603 aa24.12■■□□□ 1.45
VIM-205ENST00000485947 SLIT2O94813 1529 aa24.1■■□□□ 1.45
VIM-205ENST00000485947 TRPM3Q9HCF6 1732 aaPredicted RBP24.1■■□□□ 1.45
VIM-205ENST00000485947 UNC5CLQ8IV45 518 aa24.1■■□□□ 1.45
VIM-205ENST00000485947 EP400Q96L91 3159 aa24.1■■□□□ 1.45
VIM-205ENST00000485947 BRD4O60885 1362 aaPredicted RBP24.09■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms