RNA–Protein interactions for RNA: ENST00000485610.5

SMARCD3-212, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best)

Gene SMARCD3, Length 1,480 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-212ENST00000485610 SAFB2Q14151 953 aaKnown RBP eCLIP24.77■■□□□ 1.56
SMARCD3-212ENST00000485610 WAPLQ7Z5K2 1190 aa24.77■■□□□ 1.56
SMARCD3-212ENST00000485610 TMF1P82094 1093 aa24.77■■□□□ 1.56
SMARCD3-212ENST00000485610 DISP3Q9P2K9 1392 aa24.76■■□□□ 1.55
SMARCD3-212ENST00000485610 MINK1Q8N4C8 1332 aaPredicted RBP24.74■■□□□ 1.55
SMARCD3-212ENST00000485610 CCDC7Q96M83 1385 aa24.74■■□□□ 1.55
SMARCD3-212ENST00000485610 XIRP1Q702N8 1843 aaKnown RBP24.72■■□□□ 1.55
SMARCD3-212ENST00000485610 C11orf95C9JLR9 678 aaPredicted RBP24.71■■□□□ 1.55
SMARCD3-212ENST00000485610 KIF7Q2M1P5 1343 aa24.71■■□□□ 1.55
SMARCD3-212ENST00000485610 EVC2Q86UK5 1308 aa24.71■■□□□ 1.55
SMARCD3-212ENST00000485610 WASHC2AQ641Q2 1341 aa24.7■■□□□ 1.55
SMARCD3-212ENST00000485610 CDC42BPGQ6DT37 1551 aa24.7■■□□□ 1.54
SMARCD3-212ENST00000485610 CDCA8Q53HL2 280 aa24.7■■□□□ 1.54
SMARCD3-212ENST00000485610 ZNF335Q9H4Z2 1342 aaPredicted RBP24.7■■□□□ 1.54
SMARCD3-212ENST00000485610 ADGRL3Q9HAR2 1447 aa24.7■■□□□ 1.54
SMARCD3-212ENST00000485610 MYOM1P52179 1685 aa24.69■■□□□ 1.54
SMARCD3-212ENST00000485610 FMN2Q9NZ56 1722 aa24.67■■□□□ 1.54
SMARCD3-212ENST00000485610 NCOA3Q9Y6Q9 1424 aa24.66■■□□□ 1.54
SMARCD3-212ENST00000485610 PROSER2Q86WR7 435 aaPredicted RBP24.66■■□□□ 1.54
SMARCD3-212ENST00000485610 LRRC7Q96NW7 1537 aa24.64■■□□□ 1.54
SMARCD3-212ENST00000485610 ITSN1Q15811 1721 aa24.64■■□□□ 1.54
SMARCD3-212ENST00000485610 TMEM94Q12767 1356 aa24.63■■□□□ 1.53
SMARCD3-212ENST00000485610 PUS7Q96PZ0 661 aaKnown RBP24.63■■□□□ 1.53
SMARCD3-212ENST00000485610 TOPAZ1Q8N9V7 1692 aa24.62■■□□□ 1.53
SMARCD3-212ENST00000485610 WASLO00401 505 aaPredicted RBP24.62■■□□□ 1.53
SMARCD3-212ENST00000485610 POLR3GLQ9BT43 218 aa24.62■■□□□ 1.53
SMARCD3-212ENST00000485610 LTBP4Q8N2S1 1624 aa24.61■■□□□ 1.53
SMARCD3-212ENST00000485610 ATAD2Q6PL18 1390 aa24.61■■□□□ 1.53
SMARCD3-212ENST00000485610 SRPK2P78362 688 aaKnown RBP24.6■■□□□ 1.53
SMARCD3-212ENST00000485610 CDK19Q9BWU1 502 aa24.6■■□□□ 1.53
SMARCD3-212ENST00000485610 RGPD8O14715 1765 aaPredicted RBP24.6■■□□□ 1.53
SMARCD3-212ENST00000485610 USP32Q8NFA0 1604 aa24.6■■□□□ 1.53
SMARCD3-212ENST00000485610 C14orf37Q86TY3 774 aa24.59■■□□□ 1.53
SMARCD3-212ENST00000485610 RBM33Q96EV2 1170 aaKnown RBP24.59■■□□□ 1.53
SMARCD3-212ENST00000485610 ATP7BP35670 1465 aa24.59■■□□□ 1.53
SMARCD3-212ENST00000485610 DCCP43146 1447 aa24.58■■□□□ 1.53
SMARCD3-212ENST00000485610 CABP2Q9NPB3 220 aa24.58■■□□□ 1.52
SMARCD3-212ENST00000485610 NINLQ9Y2I6 1382 aa24.56■■□□□ 1.52
SMARCD3-212ENST00000485610 ANKARQ7Z5J8 1434 aa24.56■■□□□ 1.52
SMARCD3-212ENST00000485610 MSH6P52701 1360 aa24.54■■□□□ 1.52
SMARCD3-212ENST00000485610 C19orf44Q9H6X5 657 aa24.52■■□□□ 1.52
SMARCD3-212ENST00000485610 DDX10Q13206 875 aaKnown RBP24.51■■□□□ 1.51
SMARCD3-212ENST00000485610 AKAP12Q02952 1782 aa24.51■■□□□ 1.51
SMARCD3-212ENST00000485610 NUDT16Q96DE0 195 aaKnown RBP24.5■■□□□ 1.51
SMARCD3-212ENST00000485610 PRR36Q9H6K5 1346 aa24.5■■□□□ 1.51
SMARCD3-212ENST00000485610 PPIP5K1Q6PFW1 1433 aa24.49■■□□□ 1.51
SMARCD3-212ENST00000485610 TMC1Q8TDI8 760 aa24.47■■□□□ 1.51
SMARCD3-212ENST00000485610 MON2Q7Z3U7 1717 aa24.46■■□□□ 1.51
SMARCD3-212ENST00000485610 CCDC61Q9Y6R9 512 aa24.46■■□□□ 1.51
SMARCD3-212ENST00000485610 KIF1AQ12756 1690 aa24.46■■□□□ 1.51
SMARCD3-212ENST00000485610 ATF3P18847 181 aa24.45■■□□□ 1.51
SMARCD3-212ENST00000485610 MST1RQ04912 1400 aa24.45■■□□□ 1.5
SMARCD3-212ENST00000485610 NUTM2FA1L443 756 aa24.45■■□□□ 1.5
SMARCD3-212ENST00000485610 CADPS2Q86UW7 1296 aa24.45■■□□□ 1.5
SMARCD3-212ENST00000485610 ANKRD36BQ8N2N9 1353 aa24.44■■□□□ 1.5
SMARCD3-212ENST00000485610 SLC12A5Q9H2X9 1139 aa24.44■■□□□ 1.5
SMARCD3-212ENST00000485610 CD163L1Q9NR16 1453 aa24.43■■□□□ 1.5
SMARCD3-212ENST00000485610 C1orf167Q5SNV9 1468 aa24.43■■□□□ 1.5
SMARCD3-212ENST00000485610 CABP1Q9NZU7 370 aa24.41■■□□□ 1.5
SMARCD3-212ENST00000485610 PANK3Q9H999 370 aa24.4■■□□□ 1.5
SMARCD3-212ENST00000485610 A0A1W2PP64 1363 aa24.4■■□□□ 1.5
SMARCD3-212ENST00000485610 DIEXFQ68CQ4 756 aaKnown RBP24.39■■□□□ 1.5
SMARCD3-212ENST00000485610 TERF2IPQ9NYB0 399 aa24.39■■□□□ 1.5
SMARCD3-212ENST00000485610 NRKQ7Z2Y5 1582 aa24.39■■□□□ 1.49
SMARCD3-212ENST00000485610 PLEKHG3A1L390 1219 aa24.38■■□□□ 1.49
SMARCD3-212ENST00000485610 IQSEC2Q5JU85 1478 aa24.38■■□□□ 1.49
SMARCD3-212ENST00000485610 CPSF1Q10570 1443 aaKnown RBP24.38■■□□□ 1.49
SMARCD3-212ENST00000485610 KIF20BQ96Q89 1820 aa24.37■■□□□ 1.49
SMARCD3-212ENST00000485610 HDGFL2Q7Z4V5 671 aaPredicted RBP24.37■■□□□ 1.49
SMARCD3-212ENST00000485610 POLR3AO14802 1390 aaPredicted RBP24.37■■□□□ 1.49
SMARCD3-212ENST00000485610 NSD3Q9BZ95 1437 aa24.35■■□□□ 1.49
SMARCD3-212ENST00000485610 PHF8Q9UPP1 1060 aa24.33■■□□□ 1.49
SMARCD3-212ENST00000485610 ACEP12821 1306 aa24.33■■□□□ 1.49
SMARCD3-212ENST00000485610 ANKRD26Q9UPS8 1709 aa24.33■■□□□ 1.49
SMARCD3-212ENST00000485610 KTN1Q86UP2 1357 aaKnown RBP24.33■■□□□ 1.48
SMARCD3-212ENST00000485610 ESCO1Q5FWF5 840 aa24.32■■□□□ 1.48
SMARCD3-212ENST00000485610 EDC4Q6P2E9 1401 aaKnown RBP24.32■■□□□ 1.48
SMARCD3-212ENST00000485610 PMFBP1Q8TBY8 1022 aa24.32■■□□□ 1.48
SMARCD3-212ENST00000485610 CARD14Q9BXL6 1004 aa24.32■■□□□ 1.48
SMARCD3-212ENST00000485610 USP6P35125 1406 aa24.31■■□□□ 1.48
SMARCD3-212ENST00000485610 PER1O15534 1290 aaPredicted RBP24.31■■□□□ 1.48
SMARCD3-212ENST00000485610 KNSTRNQ9Y448 316 aa24.31■■□□□ 1.48
SMARCD3-212ENST00000485610 NGDNQ8NEJ9 315 aaKnown RBP24.3■■□□□ 1.48
SMARCD3-212ENST00000485610 ORAI2Q96SN7 254 aa24.3■■□□□ 1.48
SMARCD3-212ENST00000485610 ZNF692Q9BU19 519 aaPredicted RBP24.3■■□□□ 1.48
SMARCD3-212ENST00000485610 SLAIN2Q9P270 581 aa24.28■■□□□ 1.48
SMARCD3-212ENST00000485610 TRPM3Q9HCF6 1732 aaPredicted RBP24.27■■□□□ 1.48
SMARCD3-212ENST00000485610 NHSL1Q5SYE7 1610 aa24.27■■□□□ 1.48
SMARCD3-212ENST00000485610 ROBO1Q9Y6N7 1651 aa24.27■■□□□ 1.48
SMARCD3-212ENST00000485610 NPC1L1Q9UHC9 1359 aa24.26■■□□□ 1.47
SMARCD3-212ENST00000485610 CGNL1Q0VF96 1302 aa24.25■■□□□ 1.47
SMARCD3-212ENST00000485610 BRD4O60885 1362 aaPredicted RBP24.25■■□□□ 1.47
SMARCD3-212ENST00000485610 SSH2Q76I76 1423 aa24.24■■□□□ 1.47
SMARCD3-212ENST00000485610 NSD2O96028 1365 aa24.24■■□□□ 1.47
SMARCD3-212ENST00000485610 AMER1Q5JTC6 1135 aaPredicted RBP24.24■■□□□ 1.47
SMARCD3-212ENST00000485610 BRINP3Q76B58 766 aa24.23■■□□□ 1.47
SMARCD3-212ENST00000485610 CERKQ8TCT0 537 aa24.22■■□□□ 1.47
SMARCD3-212ENST00000485610 PIK3C2AO00443 1686 aa24.22■■□□□ 1.47
SMARCD3-212ENST00000485610 USP54Q70EL1 1684 aa24.22■■□□□ 1.47
SMARCD3-212ENST00000485610 ANP32CO43423 234 aa24.2■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms