RNA–Protein interactions for RNA: ENST00000482733.1

HMGN1-214, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 701 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-214ENST00000482733 NALCNQ8IZF0 1738 aa23.77■■□□□ 1.4
HMGN1-214ENST00000482733 NBPF1Q3BBV0 1214 aa23.76■■□□□ 1.39
HMGN1-214ENST00000482733 MST1RQ04912 1400 aa23.76■■□□□ 1.39
HMGN1-214ENST00000482733 CCER1Q8TC90 406 aaPredicted RBP23.75■■□□□ 1.39
HMGN1-214ENST00000482733 TIMELESSQ9UNS1 1208 aa23.73■■□□□ 1.39
HMGN1-214ENST00000482733 CDC42BPGQ6DT37 1551 aa23.73■■□□□ 1.39
HMGN1-214ENST00000482733 ROBO1Q9Y6N7 1651 aa23.73■■□□□ 1.39
HMGN1-214ENST00000482733 SAFB2Q14151 953 aaKnown RBP eCLIP23.71■■□□□ 1.39
HMGN1-214ENST00000482733 C1orf167Q5SNV9 1468 aa23.7■■□□□ 1.38
HMGN1-214ENST00000482733 NBPF8Q3BBV2 869 aa23.7■■□□□ 1.38
HMGN1-214ENST00000482733 BRINP3Q76B58 766 aa23.7■■□□□ 1.38
HMGN1-214ENST00000482733 ROCK2O75116 1388 aaKnown RBP23.69■■□□□ 1.38
HMGN1-214ENST00000482733 TRPM1Q7Z4N2 1603 aa23.66■■□□□ 1.38
HMGN1-214ENST00000482733 GPRASP1Q5JY77 1395 aa23.65■■□□□ 1.38
HMGN1-214ENST00000482733 MINK1Q8N4C8 1332 aaPredicted RBP23.63■■□□□ 1.37
HMGN1-214ENST00000482733 ARHGEF28Q8N1W1 1705 aaKnown RBP23.62■■□□□ 1.37
HMGN1-214ENST00000482733 ADGRB2O60241 1585 aa23.62■■□□□ 1.37
HMGN1-214ENST00000482733 ORAI2Q96SN7 254 aa23.62■■□□□ 1.37
HMGN1-214ENST00000482733 EIF3AQ14152 1382 aaKnown RBP23.62■■□□□ 1.37
HMGN1-214ENST00000482733 AHDC1Q5TGY3 1603 aaPredicted RBP23.62■■□□□ 1.37
HMGN1-214ENST00000482733 RALGAPBQ86X10 1494 aa23.62■■□□□ 1.37
HMGN1-214ENST00000482733 CENPJQ9HC77 1338 aaPredicted RBP23.61■■□□□ 1.37
HMGN1-214ENST00000482733 ESCO1Q5FWF5 840 aa23.61■■□□□ 1.37
HMGN1-214ENST00000482733 HIRIP3Q9BW71 556 aaPredicted RBP23.61■■□□□ 1.37
HMGN1-214ENST00000482733 NUTM2FA1L443 756 aa23.6■■□□□ 1.37
HMGN1-214ENST00000482733 WASLO00401 505 aaPredicted RBP23.6■■□□□ 1.37
HMGN1-214ENST00000482733 CARD11Q9BXL7 1154 aa23.6■■□□□ 1.37
HMGN1-214ENST00000482733 FMN2Q9NZ56 1722 aa23.59■■□□□ 1.37
HMGN1-214ENST00000482733 ANKARQ7Z5J8 1434 aa23.59■■□□□ 1.37
HMGN1-214ENST00000482733 PHLPP1O60346 1717 aa23.56■■□□□ 1.36
HMGN1-214ENST00000482733 NPHP3Q7Z494 1330 aa23.55■■□□□ 1.36
HMGN1-214ENST00000482733 JCADQ9P266 1359 aa23.54■■□□□ 1.36
HMGN1-214ENST00000482733 COL16A1Q07092 1604 aaPredicted RBP23.54■■□□□ 1.36
HMGN1-214ENST00000482733 NHSL1Q5SYE7 1610 aa23.53■■□□□ 1.36
HMGN1-214ENST00000482733 LRRC59Q96AG4 307 aaKnown RBP23.53■■□□□ 1.36
HMGN1-214ENST00000482733 TULP4Q9NRJ4 1543 aa23.53■■□□□ 1.36
HMGN1-214ENST00000482733 CDK19Q9BWU1 502 aa23.52■■□□□ 1.36
HMGN1-214ENST00000482733 PHF8Q9UPP1 1060 aa23.52■■□□□ 1.36
HMGN1-214ENST00000482733 SOS2Q07890 1332 aaPredicted RBP23.52■■□□□ 1.36
HMGN1-214ENST00000482733 DDX17Q92841 729 aaKnown RBP23.51■■□□□ 1.35
HMGN1-214ENST00000482733 FOXO3O43524 673 aa23.5■■□□□ 1.35
HMGN1-214ENST00000482733 KIF1AQ12756 1690 aa23.48■■□□□ 1.35
HMGN1-214ENST00000482733 NUDT16Q96DE0 195 aaKnown RBP23.48■■□□□ 1.35
HMGN1-214ENST00000482733 PRR36Q9H6K5 1346 aa23.48■■□□□ 1.35
HMGN1-214ENST00000482733 EVC2Q86UK5 1308 aa23.47■■□□□ 1.35
HMGN1-214ENST00000482733 SRPK2P78362 688 aaKnown RBP23.46■■□□□ 1.35
HMGN1-214ENST00000482733 SPATA31A6Q5VVP1 1343 aa23.46■■□□□ 1.35
HMGN1-214ENST00000482733 SBNO2Q9Y2G9 1366 aa23.46■■□□□ 1.35
HMGN1-214ENST00000482733 QRICH2Q9H0J4 1663 aa23.45■■□□□ 1.34
HMGN1-214ENST00000482733 USP32Q8NFA0 1604 aa23.45■■□□□ 1.34
HMGN1-214ENST00000482733 CCDC61Q9Y6R9 512 aa23.45■■□□□ 1.34
HMGN1-214ENST00000482733 ATP7BP35670 1465 aa23.44■■□□□ 1.34
HMGN1-214ENST00000482733 PSME1Q06323 249 aa23.44■■□□□ 1.34
HMGN1-214ENST00000482733 PMFBP1Q8TBY8 1022 aa23.44■■□□□ 1.34
HMGN1-214ENST00000482733 PXDNQ92626 1479 aa23.43■■□□□ 1.34
HMGN1-214ENST00000482733 SLC24A1O60721 1099 aa23.43■■□□□ 1.34
HMGN1-214ENST00000482733 KRT28Q7Z3Y7 464 aa23.43■■□□□ 1.34
HMGN1-214ENST00000482733 CABP2Q9NPB3 220 aa23.41■■□□□ 1.34
HMGN1-214ENST00000482733 PNPLA6Q8IY17 1366 aa23.4■■□□□ 1.34
HMGN1-214ENST00000482733 XPCQ01831 940 aaPredicted RBP23.4■■□□□ 1.34
HMGN1-214ENST00000482733 NGDNQ8NEJ9 315 aaKnown RBP23.4■■□□□ 1.34
HMGN1-214ENST00000482733 SHPRHQ149N8 1683 aa23.4■■□□□ 1.34
HMGN1-214ENST00000482733 MED1Q15648 1581 aaPredicted RBP23.4■■□□□ 1.34
HMGN1-214ENST00000482733 PLEKHG3A1L390 1219 aa23.39■■□□□ 1.33
HMGN1-214ENST00000482733 RGPD8O14715 1765 aaPredicted RBP23.38■■□□□ 1.33
HMGN1-214ENST00000482733 USP47Q96K76 1375 aa23.38■■□□□ 1.33
HMGN1-214ENST00000482733 DISP3Q9P2K9 1392 aa23.38■■□□□ 1.33
HMGN1-214ENST00000482733 ST20-MTHFSA0A0A6YYL1 179 aa23.37■■□□□ 1.33
HMGN1-214ENST00000482733 SBNO1A3KN83 1393 aa23.37■■□□□ 1.33
HMGN1-214ENST00000482733 ITSN1Q15811 1721 aa23.36■■□□□ 1.33
HMGN1-214ENST00000482733 SPATA31A3Q5VYP0 1347 aa23.36■■□□□ 1.33
HMGN1-214ENST00000482733 ATAD2Q6PL18 1390 aa23.35■■□□□ 1.33
HMGN1-214ENST00000482733 PPIP5K1Q6PFW1 1433 aa23.34■■□□□ 1.33
HMGN1-214ENST00000482733 PHF23Q9BUL5 403 aaPredicted RBP23.34■■□□□ 1.33
HMGN1-214ENST00000482733 POLR3AO14802 1390 aaPredicted RBP23.34■■□□□ 1.33
HMGN1-214ENST00000482733 TNS3Q68CZ2 1445 aa23.33■■□□□ 1.33
HMGN1-214ENST00000482733 PUS7Q96PZ0 661 aaKnown RBP23.33■■□□□ 1.33
HMGN1-214ENST00000482733 TESK2Q96S53 571 aa23.33■■□□□ 1.33
HMGN1-214ENST00000482733 ACEP12821 1306 aa23.33■■□□□ 1.32
HMGN1-214ENST00000482733 TOPAZ1Q8N9V7 1692 aa23.32■■□□□ 1.32
HMGN1-214ENST00000482733 NUTM2BA6NNL0 878 aaPredicted RBP23.32■■□□□ 1.32
HMGN1-214ENST00000482733 NUTM2EB1AL46 878 aaPredicted RBP23.32■■□□□ 1.32
HMGN1-214ENST00000482733 NUTM2AQ8IVF1 878 aaPredicted RBP23.32■■□□□ 1.32
HMGN1-214ENST00000482733 ARHGEF10O15013 1369 aa23.31■■□□□ 1.32
HMGN1-214ENST00000482733 MEX3CQ5U5Q3 659 aaKnown RBP23.31■■□□□ 1.32
HMGN1-214ENST00000482733 CABP1Q9NZU7 370 aa23.31■■□□□ 1.32
HMGN1-214ENST00000482733 LRP6O75581 1613 aa23.3■■□□□ 1.32
HMGN1-214ENST00000482733 COL22A1Q8NFW1 1626 aaPredicted RBP23.28■■□□□ 1.32
HMGN1-214ENST00000482733 TMF1P82094 1093 aa23.27■■□□□ 1.32
HMGN1-214ENST00000482733 LMOD2Q6P5Q4 547 aa23.27■■□□□ 1.32
HMGN1-214ENST00000482733 BRD4O60885 1362 aaPredicted RBP23.27■■□□□ 1.31
HMGN1-214ENST00000482733 PAK3O75914 559 aaPredicted RBP23.26■■□□□ 1.31
HMGN1-214ENST00000482733 EIF4G2P78344 907 aaKnown RBP eCLIP23.25■■□□□ 1.31
HMGN1-214ENST00000482733 ZNF692Q9BU19 519 aaPredicted RBP23.25■■□□□ 1.31
HMGN1-214ENST00000482733 CDCA8Q53HL2 280 aa23.24■■□□□ 1.31
HMGN1-214ENST00000482733 TRPM3Q9HCF6 1732 aaPredicted RBP23.22■■□□□ 1.31
HMGN1-214ENST00000482733 ADAMTS2O95450 1211 aa23.21■■□□□ 1.31
HMGN1-214ENST00000482733 HAP1P54257 671 aaPredicted RBP23.21■■□□□ 1.31
HMGN1-214ENST00000482733 TMC1Q8TDI8 760 aa23.21■■□□□ 1.31
HMGN1-214ENST00000482733 NINLQ9Y2I6 1382 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms