RNA–Protein interactions for RNA: ENST00000482056.2

C9orf3-218, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 1,951 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-218ENST00000482056 FAM161AQ3B820 660 aa19.92■□□□□ 0.78
C9orf3-218ENST00000482056 RUNDC1Q96C34 613 aa19.92■□□□□ 0.78
C9orf3-218ENST00000482056 GLI2P10070 1586 aa19.91■□□□□ 0.78
C9orf3-218ENST00000482056 NEO1Q92859 1461 aa19.91■□□□□ 0.78
C9orf3-218ENST00000482056 VGFO15240 615 aaPredicted RBP19.91■□□□□ 0.78
C9orf3-218ENST00000482056 PPM1GO15355 546 aaPredicted RBP19.91■□□□□ 0.78
C9orf3-218ENST00000482056 PDE3AQ14432 1141 aa19.91■□□□□ 0.78
C9orf3-218ENST00000482056 WWC1Q8IX03 1113 aa19.91■□□□□ 0.78
C9orf3-218ENST00000482056 EVC2Q86UK5 1308 aa19.9■□□□□ 0.78
C9orf3-218ENST00000482056 SLC12A5Q9H2X9 1139 aa19.9■□□□□ 0.78
C9orf3-218ENST00000482056 PIK3C2BO00750 1634 aa19.9■□□□□ 0.78
C9orf3-218ENST00000482056 NSD2O96028 1365 aa19.9■□□□□ 0.78
C9orf3-218ENST00000482056 BCAR3O75815 825 aa19.89■□□□□ 0.77
C9orf3-218ENST00000482056 CANXP27824 592 aaKnown RBP19.89■□□□□ 0.77
C9orf3-218ENST00000482056 SKAP1Q86WV1 359 aa19.89■□□□□ 0.77
C9orf3-218ENST00000482056 USP35Q9P2H5 1018 aa19.89■□□□□ 0.77
C9orf3-218ENST00000482056 TMEM132EQ6IEE7 984 aa19.88■□□□□ 0.77
C9orf3-218ENST00000482056 OSCARQ8IYS5 282 aa19.88■□□□□ 0.77
C9orf3-218ENST00000482056 ARHGEF28Q8N1W1 1705 aaKnown RBP19.88■□□□□ 0.77
C9orf3-218ENST00000482056 DAXXQ9UER7 740 aaPredicted RBP19.86■□□□□ 0.77
C9orf3-218ENST00000482056 SIGLEC1Q9BZZ2 1709 aa19.86■□□□□ 0.77
C9orf3-218ENST00000482056 TNNT2P45379 298 aaPredicted RBP19.86■□□□□ 0.77
C9orf3-218ENST00000482056 NEXMIFQ5QGS0 1516 aa19.86■□□□□ 0.77
C9orf3-218ENST00000482056 ANKRD36BQ8N2N9 1353 aa19.86■□□□□ 0.77
C9orf3-218ENST00000482056 IQSEC2Q5JU85 1478 aa19.85■□□□□ 0.77
C9orf3-218ENST00000482056 WDR63Q8IWG1 891 aa19.85■□□□□ 0.77
C9orf3-218ENST00000482056 ARHGAP31Q2M1Z3 1444 aa19.85■□□□□ 0.77
C9orf3-218ENST00000482056 AAMPQ13685 434 aa19.84■□□□□ 0.77
C9orf3-218ENST00000482056 NCBP3Q53F19 620 aaKnown RBP19.84■□□□□ 0.77
C9orf3-218ENST00000482056 DMRT2Q9Y5R5 561 aa19.84■□□□□ 0.77
C9orf3-218ENST00000482056 DIP2CQ9Y2E4 1556 aa19.84■□□□□ 0.77
C9orf3-218ENST00000482056 MTHFSP49914 203 aa19.83■□□□□ 0.76
C9orf3-218ENST00000482056 CCDC27Q2M243 656 aa19.83■□□□□ 0.76
C9orf3-218ENST00000482056 TCP11L2Q8N4U5 519 aa19.83■□□□□ 0.76
C9orf3-218ENST00000482056 LAS1LQ9Y4W2 734 aaKnown RBP19.83■□□□□ 0.76
C9orf3-218ENST00000482056 TULP4Q9NRJ4 1543 aa19.82■□□□□ 0.76
C9orf3-218ENST00000482056 RGS3P49796 1198 aa19.82■□□□□ 0.76
C9orf3-218ENST00000482056 C8orf34Q49A92 452 aa19.82■□□□□ 0.76
C9orf3-218ENST00000482056 NEFMP07197 916 aa19.81■□□□□ 0.76
C9orf3-218ENST00000482056 CLUAP1Q96AJ1 413 aa19.81■□□□□ 0.76
C9orf3-218ENST00000482056 ZFYVE9O95405 1425 aa19.81■□□□□ 0.76
C9orf3-218ENST00000482056 NEUROD2Q15784 382 aa19.81■□□□□ 0.76
C9orf3-218ENST00000482056 PHF23Q9BUL5 403 aaPredicted RBP19.8■□□□□ 0.76
C9orf3-218ENST00000482056 SLC52A1Q9NWF4 448 aa19.79■□□□□ 0.76
C9orf3-218ENST00000482056 MYH16Q9H6N6 1097 aa19.79■□□□□ 0.76
C9orf3-218ENST00000482056 VIRMAQ69YN4 1812 aaKnown RBP19.79■□□□□ 0.76
C9orf3-218ENST00000482056 MAPK8IP3Q9UPT6 1336 aa19.79■□□□□ 0.76
C9orf3-218ENST00000482056 RRP7AQ9Y3A4 280 aaKnown RBP19.78■□□□□ 0.76
C9orf3-218ENST00000482056 RAPGEF3O95398 923 aa19.77■□□□□ 0.76
C9orf3-218ENST00000482056 RARSP54136 660 aaKnown RBP19.77■□□□□ 0.76
C9orf3-218ENST00000482056 RICTORQ6R327 1708 aa19.77■□□□□ 0.76
C9orf3-218ENST00000482056 PMFBP1Q8TBY8 1022 aa19.77■□□□□ 0.75
C9orf3-218ENST00000482056 FRAT1Q92837 279 aaPredicted RBP19.77■□□□□ 0.75
C9orf3-218ENST00000482056 COG6Q9Y2V7 657 aa19.76■□□□□ 0.75
C9orf3-218ENST00000482056 NUTM2DQ5VT03 806 aaPredicted RBP19.75■□□□□ 0.75
C9orf3-218ENST00000482056 PANK1Q8TE04 598 aa19.75■□□□□ 0.75
C9orf3-218ENST00000482056 IGHDP01880 384 aa19.74■□□□□ 0.75
C9orf3-218ENST00000482056 U2AF1L5P0DN76 240 aaPredicted RBP19.74■□□□□ 0.75
C9orf3-218ENST00000482056 U2AF1Q01081 240 aaKnown RBP eCLIP19.74■□□□□ 0.75
C9orf3-218ENST00000482056 CABP2Q9NPB3 220 aa19.74■□□□□ 0.75
C9orf3-218ENST00000482056 ADGRB2O60241 1585 aa19.74■□□□□ 0.75
C9orf3-218ENST00000482056 ABCC11Q96J66 1382 aa19.74■□□□□ 0.75
C9orf3-218ENST00000482056 IDI1Q13907 227 aa19.74■□□□□ 0.75
C9orf3-218ENST00000482056 ATAD2Q6PL18 1390 aa19.73■□□□□ 0.75
C9orf3-218ENST00000482056 PREX1Q8TCU6 1659 aa19.72■□□□□ 0.75
C9orf3-218ENST00000482056 CT47B1P0C2W7 299 aaPredicted RBP19.72■□□□□ 0.75
C9orf3-218ENST00000482056 SRPK2P78362 688 aaKnown RBP19.72■□□□□ 0.75
C9orf3-218ENST00000482056 ANKRD26Q9UPS8 1709 aa19.71■□□□□ 0.75
C9orf3-218ENST00000482056 MYO5BQ9ULV0 1848 aa19.71■□□□□ 0.75
C9orf3-218ENST00000482056 TERF2IPQ9NYB0 399 aa19.71■□□□□ 0.75
C9orf3-218ENST00000482056 A0A1W2PP64 1363 aa19.71■□□□□ 0.75
C9orf3-218ENST00000482056 TMEM131LA2VDJ0 1609 aa19.7■□□□□ 0.74
C9orf3-218ENST00000482056 CLTCQ00610 1675 aaKnown RBP19.7■□□□□ 0.74
C9orf3-218ENST00000482056 SAFB2Q14151 953 aaKnown RBP eCLIP19.69■□□□□ 0.74
C9orf3-218ENST00000482056 ZMYM3Q14202 1370 aa19.69■□□□□ 0.74
C9orf3-218ENST00000482056 MED14O60244 1454 aa19.69■□□□□ 0.74
C9orf3-218ENST00000482056 STK26Q9P289 416 aa19.68■□□□□ 0.74
C9orf3-218ENST00000482056 PTPRMP28827 1452 aa19.67■□□□□ 0.74
C9orf3-218ENST00000482056 PNNQ9H307 717 aaKnown RBP19.66■□□□□ 0.74
C9orf3-218ENST00000482056 RWDD1Q9H446 243 aaPredicted RBP19.66■□□□□ 0.74
C9orf3-218ENST00000482056 POGKQ9P215 609 aa19.66■□□□□ 0.74
C9orf3-218ENST00000482056 YTHDC2Q9H6S0 1430 aaKnown RBP19.66■□□□□ 0.74
C9orf3-218ENST00000482056 YEATS2Q9ULM3 1422 aa19.66■□□□□ 0.74
C9orf3-218ENST00000482056 U2SURPO15042 1029 aaKnown RBP19.64■□□□□ 0.74
C9orf3-218ENST00000482056 ZKSCAN2Q63HK3 967 aa19.64■□□□□ 0.74
C9orf3-218ENST00000482056 HDGFL2Q7Z4V5 671 aaPredicted RBP19.64■□□□□ 0.74
C9orf3-218ENST00000482056 SLC4A3P48751 1232 aa19.64■□□□□ 0.73
C9orf3-218ENST00000482056 FTSJ3Q8IY81 847 aaKnown RBP19.63■□□□□ 0.73
C9orf3-218ENST00000482056 PRAM1Q96QH2 718 aa19.63■□□□□ 0.73
C9orf3-218ENST00000482056 BCL2L13Q9BXK5 485 aa19.63■□□□□ 0.73
C9orf3-218ENST00000482056 GGNBP2Q9H3C7 697 aa19.63■□□□□ 0.73
C9orf3-218ENST00000482056 COL3A1P02461 1466 aaPredicted RBP19.63■□□□□ 0.73
C9orf3-218ENST00000482056 MINK1Q8N4C8 1332 aaPredicted RBP19.63■□□□□ 0.73
C9orf3-218ENST00000482056 RLBP1P12271 317 aa19.63■□□□□ 0.73
C9orf3-218ENST00000482056 NFKBIBQ15653 356 aa19.63■□□□□ 0.73
C9orf3-218ENST00000482056 IL16Q14005 1332 aa19.62■□□□□ 0.73
C9orf3-218ENST00000482056 MVPQ14764 893 aaKnown RBP19.62■□□□□ 0.73
C9orf3-218ENST00000482056 TMPOP42166 694 aaKnown RBP19.61■□□□□ 0.73
C9orf3-218ENST00000482056 UPF2Q9HAU5 1272 aaKnown RBP19.61■□□□□ 0.73
C9orf3-218ENST00000482056 BECN1Q14457 450 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms