RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 STRCQ7RTU9 1775 aa14.1□□□□□ -0.15
USP39-215ENST00000481409 KCNA6P17658 529 aa14.1□□□□□ -0.15
USP39-215ENST00000481409 PRAM1Q96QH2 718 aa14.1□□□□□ -0.15
USP39-215ENST00000481409 NKTRP30414 1462 aaKnown RBP14.09□□□□□ -0.15
USP39-215ENST00000481409 ADGRB2O60241 1585 aa14.09□□□□□ -0.15
USP39-215ENST00000481409 NINLQ9Y2I6 1382 aa14.09□□□□□ -0.15
USP39-215ENST00000481409 NCOA3Q9Y6Q9 1424 aa14.07□□□□□ -0.16
USP39-215ENST00000481409 C11orf95C9JLR9 678 aaPredicted RBP14.07□□□□□ -0.16
USP39-215ENST00000481409 HSPA2P54652 639 aa14.07□□□□□ -0.16
USP39-215ENST00000481409 DISP3Q9P2K9 1392 aa14.07□□□□□ -0.16
USP39-215ENST00000481409 DIEXFQ68CQ4 756 aaKnown RBP14.06□□□□□ -0.16
USP39-215ENST00000481409 ATAD2Q6PL18 1390 aa14.06□□□□□ -0.16
USP39-215ENST00000481409 ROBO2Q9HCK4 1378 aa14.06□□□□□ -0.16
USP39-215ENST00000481409 TULP4Q9NRJ4 1543 aa14.04□□□□□ -0.16
USP39-215ENST00000481409 MAPK8IP2Q13387 824 aaPredicted RBP14.03□□□□□ -0.16
USP39-215ENST00000481409 WAPLQ7Z5K2 1190 aa14.03□□□□□ -0.16
USP39-215ENST00000481409 WASLO00401 505 aaPredicted RBP14.02□□□□□ -0.17
USP39-215ENST00000481409 DDX10Q13206 875 aaKnown RBP14.02□□□□□ -0.17
USP39-215ENST00000481409 PLEKHH1Q9ULM0 1364 aa14.01□□□□□ -0.17
USP39-215ENST00000481409 MINK1Q8N4C8 1332 aaPredicted RBP14.01□□□□□ -0.17
USP39-215ENST00000481409 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.01□□□□□ -0.17
USP39-215ENST00000481409 SRPK2P78362 688 aaKnown RBP13.99□□□□□ -0.17
USP39-215ENST00000481409 SAFB2Q14151 953 aaKnown RBP eCLIP13.99□□□□□ -0.17
USP39-215ENST00000481409 CDK19Q9BWU1 502 aa13.99□□□□□ -0.17
USP39-215ENST00000481409 CDC42BPGQ6DT37 1551 aa13.99□□□□□ -0.17
USP39-215ENST00000481409 ANKARQ7Z5J8 1434 aa13.98□□□□□ -0.17
USP39-215ENST00000481409 ADGRL3Q9HAR2 1447 aa13.98□□□□□ -0.17
USP39-215ENST00000481409 MYOM1P52179 1685 aa13.98□□□□□ -0.17
USP39-215ENST00000481409 DCCP43146 1447 aa13.98□□□□□ -0.17
USP39-215ENST00000481409 KTN1Q86UP2 1357 aaKnown RBP13.97□□□□□ -0.17
USP39-215ENST00000481409 POLR3GLQ9BT43 218 aa13.97□□□□□ -0.17
USP39-215ENST00000481409 PROSER2Q86WR7 435 aaPredicted RBP13.96□□□□□ -0.17
USP39-215ENST00000481409 CCDC61Q9Y6R9 512 aa13.96□□□□□ -0.17
USP39-215ENST00000481409 ITSN1Q15811 1721 aa13.95□□□□□ -0.18
USP39-215ENST00000481409 ATP7BP35670 1465 aa13.95□□□□□ -0.18
USP39-215ENST00000481409 CABP2Q9NPB3 220 aa13.95□□□□□ -0.18
USP39-215ENST00000481409 TERF2IPQ9NYB0 399 aa13.95□□□□□ -0.18
USP39-215ENST00000481409 NALCNQ8IZF0 1738 aa13.95□□□□□ -0.18
USP39-215ENST00000481409 ANKRD36BQ8N2N9 1353 aa13.95□□□□□ -0.18
USP39-215ENST00000481409 NPC1L1Q9UHC9 1359 aa13.95□□□□□ -0.18
USP39-215ENST00000481409 STRCP1A6NGW2 1772 aa13.94□□□□□ -0.18
USP39-215ENST00000481409 ANP32CO43423 234 aa13.94□□□□□ -0.18
USP39-215ENST00000481409 C19orf44Q9H6X5 657 aa13.94□□□□□ -0.18
USP39-215ENST00000481409 FMN2Q9NZ56 1722 aa13.94□□□□□ -0.18
USP39-215ENST00000481409 NUDT16Q96DE0 195 aaKnown RBP13.93□□□□□ -0.18
USP39-215ENST00000481409 ZNF692Q9BU19 519 aaPredicted RBP13.93□□□□□ -0.18
USP39-215ENST00000481409 PANK3Q9H999 370 aa13.93□□□□□ -0.18
USP39-215ENST00000481409 TOPAZ1Q8N9V7 1692 aa13.92□□□□□ -0.18
USP39-215ENST00000481409 PLEKHG3A1L390 1219 aa13.92□□□□□ -0.18
USP39-215ENST00000481409 PER1O15534 1290 aaPredicted RBP13.92□□□□□ -0.18
USP39-215ENST00000481409 HDGFL2Q7Z4V5 671 aaPredicted RBP13.92□□□□□ -0.18
USP39-215ENST00000481409 KNSTRNQ9Y448 316 aa13.92□□□□□ -0.18
USP39-215ENST00000481409 USP32Q8NFA0 1604 aa13.92□□□□□ -0.18
USP39-215ENST00000481409 TMC1Q8TDI8 760 aa13.91□□□□□ -0.18
USP39-215ENST00000481409 BRD4O60885 1362 aaPredicted RBP13.91□□□□□ -0.18
USP39-215ENST00000481409 TMEM94Q12767 1356 aa13.91□□□□□ -0.18
USP39-215ENST00000481409 PPIP5K1Q6PFW1 1433 aa13.9□□□□□ -0.18
USP39-215ENST00000481409 C14orf37Q86TY3 774 aa13.9□□□□□ -0.18
USP39-215ENST00000481409 CADPS2Q86UW7 1296 aa13.9□□□□□ -0.18
USP39-215ENST00000481409 SLC12A5Q9H2X9 1139 aa13.9□□□□□ -0.18
USP39-215ENST00000481409 MSH6P52701 1360 aa13.9□□□□□ -0.18
USP39-215ENST00000481409 LRRC7Q96NW7 1537 aa13.9□□□□□ -0.19
USP39-215ENST00000481409 CPSF1Q10570 1443 aaKnown RBP13.9□□□□□ -0.19
USP39-215ENST00000481409 NSD2O96028 1365 aa13.89□□□□□ -0.19
USP39-215ENST00000481409 RALBP1Q15311 655 aa13.89□□□□□ -0.19
USP39-215ENST00000481409 ZNF335Q9H4Z2 1342 aaPredicted RBP13.89□□□□□ -0.19
USP39-215ENST00000481409 CABP1Q9NZU7 370 aa13.88□□□□□ -0.19
USP39-215ENST00000481409 PRR36Q9H6K5 1346 aa13.88□□□□□ -0.19
USP39-215ENST00000481409 CD163L1Q9NR16 1453 aa13.87□□□□□ -0.19
USP39-215ENST00000481409 AKAP12Q02952 1782 aa13.87□□□□□ -0.19
USP39-215ENST00000481409 ATF3P18847 181 aa13.87□□□□□ -0.19
USP39-215ENST00000481409 CGNL1Q0VF96 1302 aa13.87□□□□□ -0.19
USP39-215ENST00000481409 A0A1W2PP64 1363 aa13.86□□□□□ -0.19
USP39-215ENST00000481409 POLR3AO14802 1390 aaPredicted RBP13.86□□□□□ -0.19
USP39-215ENST00000481409 XIRP1Q702N8 1843 aaKnown RBP13.86□□□□□ -0.19
USP39-215ENST00000481409 PRKRIP1Q9H875 184 aaPredicted RBP13.86□□□□□ -0.19
USP39-215ENST00000481409 EDC4Q6P2E9 1401 aaKnown RBP13.86□□□□□ -0.19
USP39-215ENST00000481409 KIF1AQ12756 1690 aa13.85□□□□□ -0.19
USP39-215ENST00000481409 MON2Q7Z3U7 1717 aa13.85□□□□□ -0.19
USP39-215ENST00000481409 NSD3Q9BZ95 1437 aa13.85□□□□□ -0.19
USP39-215ENST00000481409 CCER2I3L3R5 266 aa13.85□□□□□ -0.19
USP39-215ENST00000481409 AMER1Q5JTC6 1135 aaPredicted RBP13.85□□□□□ -0.19
USP39-215ENST00000481409 SCAF1Q9H7N4 1312 aaKnown RBP13.85□□□□□ -0.19
USP39-215ENST00000481409 CARD14Q9BXL6 1004 aa13.84□□□□□ -0.19
USP39-215ENST00000481409 PARD3Q8TEW0 1356 aa13.83□□□□□ -0.19
USP39-215ENST00000481409 LTBP4Q8N2S1 1624 aa13.83□□□□□ -0.2
USP39-215ENST00000481409 C1orf167Q5SNV9 1468 aa13.83□□□□□ -0.2
USP39-215ENST00000481409 RGPD8O14715 1765 aaPredicted RBP13.83□□□□□ -0.2
USP39-215ENST00000481409 MST1RQ04912 1400 aa13.82□□□□□ -0.2
USP39-215ENST00000481409 PHF8Q9UPP1 1060 aa13.82□□□□□ -0.2
USP39-215ENST00000481409 ACEP12821 1306 aa13.82□□□□□ -0.2
USP39-215ENST00000481409 TTC21AQ8NDW8 1320 aa13.82□□□□□ -0.2
USP39-215ENST00000481409 USP6P35125 1406 aa13.81□□□□□ -0.2
USP39-215ENST00000481409 IQSEC2Q5JU85 1478 aa13.81□□□□□ -0.2
USP39-215ENST00000481409 MIER1Q8N108 512 aa13.81□□□□□ -0.2
USP39-215ENST00000481409 NRKQ7Z2Y5 1582 aa13.8□□□□□ -0.2
USP39-215ENST00000481409 NGDNQ8NEJ9 315 aaKnown RBP13.8□□□□□ -0.2
USP39-215ENST00000481409 ANKRD26Q9UPS8 1709 aa13.8□□□□□ -0.2
USP39-215ENST00000481409 MYBBP1AQ9BQG0 1328 aaKnown RBP13.8□□□□□ -0.2
USP39-215ENST00000481409 KIF20BQ96Q89 1820 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms