RNA–Protein interactions for RNA: ENST00000479941.1

ATG4B-219, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 2

Gene ATG4B, Length 374 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-219ENST00000479941 PLEKHH1Q9ULM0 1364 aa15.47■□□□□ 0.07
ATG4B-219ENST00000479941 SCAF1Q9H7N4 1312 aaKnown RBP15.46■□□□□ 0.07
ATG4B-219ENST00000479941 SLAIN2Q9P270 581 aa15.46■□□□□ 0.07
ATG4B-219ENST00000479941 ROCK2O75116 1388 aaKnown RBP15.46■□□□□ 0.07
ATG4B-219ENST00000479941 TRPM1Q7Z4N2 1603 aa15.45■□□□□ 0.06
ATG4B-219ENST00000479941 NALCNQ8IZF0 1738 aa15.45■□□□□ 0.06
ATG4B-219ENST00000479941 GPRASP1Q5JY77 1395 aa15.43■□□□□ 0.06
ATG4B-219ENST00000479941 SAFB2Q14151 953 aaKnown RBP eCLIP15.42■□□□□ 0.06
ATG4B-219ENST00000479941 CDC42BPGQ6DT37 1551 aa15.41■□□□□ 0.06
ATG4B-219ENST00000479941 RALGAPBQ86X10 1494 aa15.41■□□□□ 0.06
ATG4B-219ENST00000479941 MST1RQ04912 1400 aa15.41■□□□□ 0.06
ATG4B-219ENST00000479941 ARHGEF28Q8N1W1 1705 aaKnown RBP15.4■□□□□ 0.06
ATG4B-219ENST00000479941 CARD11Q9BXL7 1154 aa15.4■□□□□ 0.06
ATG4B-219ENST00000479941 CENPJQ9HC77 1338 aaPredicted RBP15.39■□□□□ 0.05
ATG4B-219ENST00000479941 EIF3AQ14152 1382 aaKnown RBP15.38■□□□□ 0.05
ATG4B-219ENST00000479941 C1orf167Q5SNV9 1468 aa15.38■□□□□ 0.05
ATG4B-219ENST00000479941 ROBO1Q9Y6N7 1651 aa15.37■□□□□ 0.05
ATG4B-219ENST00000479941 MINK1Q8N4C8 1332 aaPredicted RBP15.37■□□□□ 0.05
ATG4B-219ENST00000479941 ADGRB2O60241 1585 aa15.36■□□□□ 0.05
ATG4B-219ENST00000479941 BRINP3Q76B58 766 aa15.36■□□□□ 0.05
ATG4B-219ENST00000479941 HIRIP3Q9BW71 556 aaPredicted RBP15.36■□□□□ 0.05
ATG4B-219ENST00000479941 WASLO00401 505 aaPredicted RBP15.35■□□□□ 0.05
ATG4B-219ENST00000479941 HSPA1LP34931 641 aa15.35■□□□□ 0.05
ATG4B-219ENST00000479941 NUTM2FA1L443 756 aa15.33■□□□□ 0.04
ATG4B-219ENST00000479941 ORAI2Q96SN7 254 aa15.33■□□□□ 0.04
ATG4B-219ENST00000479941 FMN2Q9NZ56 1722 aa15.33■□□□□ 0.04
ATG4B-219ENST00000479941 ESCO1Q5FWF5 840 aa15.32■□□□□ 0.04
ATG4B-219ENST00000479941 ANKARQ7Z5J8 1434 aa15.32■□□□□ 0.04
ATG4B-219ENST00000479941 CDK19Q9BWU1 502 aa15.31■□□□□ 0.04
ATG4B-219ENST00000479941 TULP4Q9NRJ4 1543 aa15.3■□□□□ 0.04
ATG4B-219ENST00000479941 SBNO2Q9Y2G9 1366 aa15.3■□□□□ 0.04
ATG4B-219ENST00000479941 QRICH2Q9H0J4 1663 aa15.29■□□□□ 0.04
ATG4B-219ENST00000479941 AHDC1Q5TGY3 1603 aaPredicted RBP15.29■□□□□ 0.04
ATG4B-219ENST00000479941 EVC2Q86UK5 1308 aa15.28■□□□□ 0.04
ATG4B-219ENST00000479941 SLC24A1O60721 1099 aa15.28■□□□□ 0.04
ATG4B-219ENST00000479941 NPHP3Q7Z494 1330 aa15.27■□□□□ 0.04
ATG4B-219ENST00000479941 PRR36Q9H6K5 1346 aa15.27■□□□□ 0.04
ATG4B-219ENST00000479941 PHLPP1O60346 1717 aa15.27■□□□□ 0.04
ATG4B-219ENST00000479941 SRPK2P78362 688 aaKnown RBP15.27■□□□□ 0.04
ATG4B-219ENST00000479941 NUDT16Q96DE0 195 aaKnown RBP15.27■□□□□ 0.04
ATG4B-219ENST00000479941 PHF8Q9UPP1 1060 aa15.27■□□□□ 0.04
ATG4B-219ENST00000479941 USP47Q96K76 1375 aa15.26■□□□□ 0.03
ATG4B-219ENST00000479941 NHSL1Q5SYE7 1610 aa15.26■□□□□ 0.03
ATG4B-219ENST00000479941 USP32Q8NFA0 1604 aa15.26■□□□□ 0.03
ATG4B-219ENST00000479941 ST20-MTHFSA0A0A6YYL1 179 aa15.26■□□□□ 0.03
ATG4B-219ENST00000479941 ATP7BP35670 1465 aa15.26■□□□□ 0.03
ATG4B-219ENST00000479941 SOS2Q07890 1332 aaPredicted RBP15.25■□□□□ 0.03
ATG4B-219ENST00000479941 FOXO3O43524 673 aa15.25■□□□□ 0.03
ATG4B-219ENST00000479941 DDX17Q92841 729 aaKnown RBP15.25■□□□□ 0.03
ATG4B-219ENST00000479941 LRRC59Q96AG4 307 aaKnown RBP15.25■□□□□ 0.03
ATG4B-219ENST00000479941 CABP2Q9NPB3 220 aa15.25■□□□□ 0.03
ATG4B-219ENST00000479941 CCDC61Q9Y6R9 512 aa15.25■□□□□ 0.03
ATG4B-219ENST00000479941 KIF1AQ12756 1690 aa15.25■□□□□ 0.03
ATG4B-219ENST00000479941 COL16A1Q07092 1604 aaPredicted RBP15.25■□□□□ 0.03
ATG4B-219ENST00000479941 RGPD8O14715 1765 aaPredicted RBP15.24■□□□□ 0.03
ATG4B-219ENST00000479941 PMFBP1Q8TBY8 1022 aa15.23■□□□□ 0.03
ATG4B-219ENST00000479941 TESK2Q96S53 571 aa15.23■□□□□ 0.03
ATG4B-219ENST00000479941 JCADQ9P266 1359 aa15.23■□□□□ 0.03
ATG4B-219ENST00000479941 ITSN1Q15811 1721 aa15.21■□□□□ 0.03
ATG4B-219ENST00000479941 PLEKHG3A1L390 1219 aa15.21■□□□□ 0.03
ATG4B-219ENST00000479941 PSME1Q06323 249 aa15.21■□□□□ 0.03
ATG4B-219ENST00000479941 NGDNQ8NEJ9 315 aaKnown RBP15.21■□□□□ 0.03
ATG4B-219ENST00000479941 PUS7Q96PZ0 661 aaKnown RBP15.21■□□□□ 0.03
ATG4B-219ENST00000479941 PXDNQ92626 1479 aa15.2■□□□□ 0.02
ATG4B-219ENST00000479941 EIF4G2P78344 907 aaKnown RBP eCLIP15.2■□□□□ 0.02
ATG4B-219ENST00000479941 KRT28Q7Z3Y7 464 aa15.2■□□□□ 0.02
ATG4B-219ENST00000479941 ATAD2Q6PL18 1390 aa15.2■□□□□ 0.02
ATG4B-219ENST00000479941 PPIP5K1Q6PFW1 1433 aa15.19■□□□□ 0.02
ATG4B-219ENST00000479941 TMF1P82094 1093 aa15.19■□□□□ 0.02
ATG4B-219ENST00000479941 TOPAZ1Q8N9V7 1692 aa15.19■□□□□ 0.02
ATG4B-219ENST00000479941 XPCQ01831 940 aaPredicted RBP15.18■□□□□ 0.02
ATG4B-219ENST00000479941 CABP1Q9NZU7 370 aa15.18■□□□□ 0.02
ATG4B-219ENST00000479941 POLR3AO14802 1390 aaPredicted RBP15.18■□□□□ 0.02
ATG4B-219ENST00000479941 ACEP12821 1306 aa15.17■□□□□ 0.02
ATG4B-219ENST00000479941 SPATA31A6Q5VVP1 1343 aa15.17■□□□□ 0.02
ATG4B-219ENST00000479941 SBNO1A3KN83 1393 aa15.16■□□□□ 0.02
ATG4B-219ENST00000479941 PNPLA6Q8IY17 1366 aa15.16■□□□□ 0.02
ATG4B-219ENST00000479941 HSPA5P11021 654 aaKnown RBP15.16■□□□□ 0.02
ATG4B-219ENST00000479941 CDCA8Q53HL2 280 aa15.16■□□□□ 0.02
ATG4B-219ENST00000479941 SPATA31A3Q5VYP0 1347 aa15.16■□□□□ 0.02
ATG4B-219ENST00000479941 SHPRHQ149N8 1683 aa15.16■□□□□ 0.02
ATG4B-219ENST00000479941 TNS3Q68CZ2 1445 aa15.14■□□□□ 0.01
ATG4B-219ENST00000479941 DISP3Q9P2K9 1392 aa15.13■□□□□ 0.01
ATG4B-219ENST00000479941 ZNF692Q9BU19 519 aaPredicted RBP15.13■□□□□ 0.01
ATG4B-219ENST00000479941 ARHGEF10O15013 1369 aa15.12■□□□□ 0.01
ATG4B-219ENST00000479941 BRD4O60885 1362 aaPredicted RBP15.12■□□□□ 0.01
ATG4B-219ENST00000479941 NINLQ9Y2I6 1382 aa15.12■□□□□ 0.01
ATG4B-219ENST00000479941 TMC1Q8TDI8 760 aa15.12■□□□□ 0.01
ATG4B-219ENST00000479941 PAK3O75914 559 aaPredicted RBP15.11■□□□□ 0.01
ATG4B-219ENST00000479941 COL22A1Q8NFW1 1626 aaPredicted RBP15.1■□□□□ 0.01
ATG4B-219ENST00000479941 TRPM3Q9HCF6 1732 aaPredicted RBP15.1■□□□□ 0.01
ATG4B-219ENST00000479941 LMOD2Q6P5Q4 547 aa15.1■□□□□ 0.01
ATG4B-219ENST00000479941 USP6P35125 1406 aa15.09■□□□□ 0.01
ATG4B-219ENST00000479941 CPSF1Q10570 1443 aaKnown RBP15.09■□□□□ 0.01
ATG4B-219ENST00000479941 HDGFL2Q7Z4V5 671 aaPredicted RBP15.09■□□□□ 0.01
ATG4B-219ENST00000479941 SLC12A5Q9H2X9 1139 aa15.09■□□□□ 0.01
ATG4B-219ENST00000479941 TERF2IPQ9NYB0 399 aa15.09■□□□□ 0.01
ATG4B-219ENST00000479941 MED1Q15648 1581 aaPredicted RBP15.09■□□□□ 0.01
ATG4B-219ENST00000479941 NUTM2BA6NNL0 878 aaPredicted RBP15.08■□□□□ 0
ATG4B-219ENST00000479941 NUTM2EB1AL46 878 aaPredicted RBP15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms