RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 WASHC2CQ9Y4E1 1318 aa16.7■□□□□ 0.26
USP42-206ENST00000479544 EXOSC9Q06265 439 aaKnown RBP16.7■□□□□ 0.26
USP42-206ENST00000479544 RUNDC1Q96C34 613 aa16.7■□□□□ 0.26
USP42-206ENST00000479544 PRPF40AO75400 957 aaKnown RBP16.7■□□□□ 0.26
USP42-206ENST00000479544 RIPK4P57078 832 aa16.7■□□□□ 0.26
USP42-206ENST00000479544 FGD1P98174 961 aa16.7■□□□□ 0.26
USP42-206ENST00000479544 DISP1Q96F81 1524 aa16.69■□□□□ 0.26
USP42-206ENST00000479544 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.69■□□□□ 0.26
USP42-206ENST00000479544 RILPL2Q969X0 211 aa16.69■□□□□ 0.26
USP42-206ENST00000479544 CFAP70Q5T0N1 1121 aa16.68■□□□□ 0.26
USP42-206ENST00000479544 KIAA0556O60303 1618 aa16.68■□□□□ 0.26
USP42-206ENST00000479544 GLI2P10070 1586 aa16.68■□□□□ 0.26
USP42-206ENST00000479544 RRP9O43818 475 aaKnown RBP16.67■□□□□ 0.26
USP42-206ENST00000479544 TMEM132EQ6IEE7 984 aa16.67■□□□□ 0.26
USP42-206ENST00000479544 ILDR1Q86SU0 546 aaPredicted RBP16.67■□□□□ 0.26
USP42-206ENST00000479544 SYAP1Q96A49 352 aaPredicted RBP16.67■□□□□ 0.26
USP42-206ENST00000479544 EIF3AQ14152 1382 aaKnown RBP16.67■□□□□ 0.26
USP42-206ENST00000479544 GGNBP2Q9H3C7 697 aa16.67■□□□□ 0.26
USP42-206ENST00000479544 PRDM10Q9NQV6 1147 aa16.67■□□□□ 0.26
USP42-206ENST00000479544 SUPT6HQ7KZ85 1726 aaKnown RBP16.67■□□□□ 0.26
USP42-206ENST00000479544 SLC12A5Q9H2X9 1139 aa16.66■□□□□ 0.26
USP42-206ENST00000479544 KIF13AQ9H1H9 1805 aa16.65■□□□□ 0.26
USP42-206ENST00000479544 TNNQ9UQP3 1299 aa16.65■□□□□ 0.26
USP42-206ENST00000479544 NUTM2FA1L443 756 aa16.64■□□□□ 0.25
USP42-206ENST00000479544 HMOX1P09601 288 aa16.64■□□□□ 0.25
USP42-206ENST00000479544 ABCC5O15440 1437 aa16.64■□□□□ 0.25
USP42-206ENST00000479544 PTPN23Q9H3S7 1636 aa16.64■□□□□ 0.25
USP42-206ENST00000479544 WWC1Q8IX03 1113 aa16.64■□□□□ 0.25
USP42-206ENST00000479544 TROQ12816 1431 aaPredicted RBP16.63■□□□□ 0.25
USP42-206ENST00000479544 DMRT2Q9Y5R5 561 aa16.63■□□□□ 0.25
USP42-206ENST00000479544 AFAP1Q8N556 730 aa16.63■□□□□ 0.25
USP42-206ENST00000479544 NOB1Q9ULX3 412 aaKnown RBP16.62■□□□□ 0.25
USP42-206ENST00000479544 ZNF592Q92610 1267 aa16.62■□□□□ 0.25
USP42-206ENST00000479544 XPCQ01831 940 aaPredicted RBP16.62■□□□□ 0.25
USP42-206ENST00000479544 C9orf84Q5VXU9 1444 aa16.61■□□□□ 0.25
USP42-206ENST00000479544 MAGI3Q5TCQ9 1506 aa16.61■□□□□ 0.25
USP42-206ENST00000479544 DENND4BO75064 1496 aaPredicted RBP16.61■□□□□ 0.25
USP42-206ENST00000479544 TPM2P07951 284 aa16.61■□□□□ 0.25
USP42-206ENST00000479544 HDGFL2Q7Z4V5 671 aaPredicted RBP16.61■□□□□ 0.25
USP42-206ENST00000479544 PCDHB15Q9Y5E8 787 aa16.61■□□□□ 0.25
USP42-206ENST00000479544 NECTIN2Q92692 538 aa16.6■□□□□ 0.25
USP42-206ENST00000479544 ANO2Q9NQ90 1003 aa16.6■□□□□ 0.25
USP42-206ENST00000479544 ROCK1Q13464 1354 aa16.6■□□□□ 0.25
USP42-206ENST00000479544 TNPO1Q92973 898 aaKnown RBP16.59■□□□□ 0.25
USP42-206ENST00000479544 UQCRHLA0A096LP55 91 aa16.59■□□□□ 0.25
USP42-206ENST00000479544 UQCRHP07919 91 aa16.59■□□□□ 0.25
USP42-206ENST00000479544 NUCB2P80303 420 aa16.59■□□□□ 0.25
USP42-206ENST00000479544 MVPQ14764 893 aaKnown RBP16.59■□□□□ 0.25
USP42-206ENST00000479544 MINK1Q8N4C8 1332 aaPredicted RBP16.59■□□□□ 0.25
USP42-206ENST00000479544 SSFA2P28290 1259 aa16.58■□□□□ 0.25
USP42-206ENST00000479544 CCDC173Q0VFZ6 552 aa16.58■□□□□ 0.25
USP42-206ENST00000479544 SPINK5Q9NQ38 1064 aaPredicted RBP16.58■□□□□ 0.25
USP42-206ENST00000479544 RPRD2Q5VT52 1461 aaKnown RBP16.58■□□□□ 0.24
USP42-206ENST00000479544 ZNF771Q7L3S4 317 aaPredicted RBP16.58■□□□□ 0.24
USP42-206ENST00000479544 RARSP54136 660 aaKnown RBP16.58■□□□□ 0.24
USP42-206ENST00000479544 HECW1Q76N89 1606 aa16.57■□□□□ 0.24
USP42-206ENST00000479544 ZCCHC11Q5TAX3 1644 aaKnown RBP16.57■□□□□ 0.24
USP42-206ENST00000479544 NEK4P51957 841 aa16.57■□□□□ 0.24
USP42-206ENST00000479544 CABP2Q9NPB3 220 aa16.57■□□□□ 0.24
USP42-206ENST00000479544 DHX29Q7Z478 1369 aaKnown RBP16.56■□□□□ 0.24
USP42-206ENST00000479544 TBC1D32Q96NH3 1257 aa16.56■□□□□ 0.24
USP42-206ENST00000479544 RTF1Q92541 710 aaKnown RBP16.56■□□□□ 0.24
USP42-206ENST00000479544 RNF123Q5XPI4 1314 aa16.56■□□□□ 0.24
USP42-206ENST00000479544 ZSCAN30Q86W11 494 aa16.56■□□□□ 0.24
USP42-206ENST00000479544 PODXL2Q9NZ53 605 aa16.56■□□□□ 0.24
USP42-206ENST00000479544 K7ELQ4 463 aaPredicted RBP16.55■□□□□ 0.24
USP42-206ENST00000479544 CFAP44Q96MT7 982 aa16.55■□□□□ 0.24
USP42-206ENST00000479544 ATP10BO94823 1461 aa16.55■□□□□ 0.24
USP42-206ENST00000479544 NEO1Q92859 1461 aa16.55■□□□□ 0.24
USP42-206ENST00000479544 MAPK8IP2Q13387 824 aaPredicted RBP16.55■□□□□ 0.24
USP42-206ENST00000479544 TMEM57Q8N5G2 664 aa16.55■□□□□ 0.24
USP42-206ENST00000479544 FBXO41Q8TF61 875 aa16.55■□□□□ 0.24
USP42-206ENST00000479544 CLCN1P35523 988 aa16.54■□□□□ 0.24
USP42-206ENST00000479544 TERF2IPQ9NYB0 399 aa16.54■□□□□ 0.24
USP42-206ENST00000479544 HMMRO75330 724 aa16.54■□□□□ 0.24
USP42-206ENST00000479544 CCDC27Q2M243 656 aa16.54■□□□□ 0.24
USP42-206ENST00000479544 CDC45O75419 566 aa16.53■□□□□ 0.24
USP42-206ENST00000479544 CSPP1Q1MSJ5 1256 aa16.53■□□□□ 0.24
USP42-206ENST00000479544 ATF7IPQ6VMQ6 1270 aa16.53■□□□□ 0.24
USP42-206ENST00000479544 ZHX1Q9UKY1 873 aaPredicted RBP16.53■□□□□ 0.24
USP42-206ENST00000479544 DIAPH1O60610 1272 aaKnown RBP16.53■□□□□ 0.24
USP42-206ENST00000479544 PHF14O94880 888 aa16.53■□□□□ 0.24
USP42-206ENST00000479544 ERBINQ96RT1 1412 aa16.53■□□□□ 0.24
USP42-206ENST00000479544 SYCE3A1L190 88 aa16.53■□□□□ 0.24
USP42-206ENST00000479544 REC8O95072 547 aa16.53■□□□□ 0.24
USP42-206ENST00000479544 NGEFQ8N5V2 710 aa16.53■□□□□ 0.24
USP42-206ENST00000479544 RBM42Q9BTD8 480 aaKnown RBP16.53■□□□□ 0.24
USP42-206ENST00000479544 SPC24Q8NBT2 197 aa16.52■□□□□ 0.24
USP42-206ENST00000479544 RLBP1P12271 317 aa16.52■□□□□ 0.23
USP42-206ENST00000479544 THUMPD2Q9BTF0 503 aaKnown RBP16.52■□□□□ 0.23
USP42-206ENST00000479544 CHD1LQ86WJ1 897 aa16.51■□□□□ 0.23
USP42-206ENST00000479544 FBXW7Q969H0 707 aa16.51■□□□□ 0.23
USP42-206ENST00000479544 LRPPRCP42704 1394 aaKnown RBP16.51■□□□□ 0.23
USP42-206ENST00000479544 LMOD2Q6P5Q4 547 aa16.51■□□□□ 0.23
USP42-206ENST00000479544 SSH1Q8WYL5 1049 aa16.51■□□□□ 0.23
USP42-206ENST00000479544 DISP3Q9P2K9 1392 aa16.51■□□□□ 0.23
USP42-206ENST00000479544 VPS37CA5D8V6 355 aaPredicted RBP16.51■□□□□ 0.23
USP42-206ENST00000479544 KIF16BQ96L93 1317 aa16.51■□□□□ 0.23
USP42-206ENST00000479544 PLEKHH1Q9ULM0 1364 aa16.51■□□□□ 0.23
USP42-206ENST00000479544 FANCAO15360 1455 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms