RNA–Protein interactions for RNA: ENST00000479440.1

DDX56-210, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-210ENST00000479440 ZRANB1Q9UGI0 708 aa24.48■■□□□ 1.51
DDX56-210ENST00000479440 NPHP3Q7Z494 1330 aa24.47■■□□□ 1.51
DDX56-210ENST00000479440 RPGRIP1LQ68CZ1 1315 aa24.44■■□□□ 1.5
DDX56-210ENST00000479440 PXDNQ92626 1479 aa24.44■■□□□ 1.5
DDX56-210ENST00000479440 MARF1Q9Y4F3 1742 aaKnown RBP24.44■■□□□ 1.5
DDX56-210ENST00000479440 CCDC125Q86Z20 511 aa24.43■■□□□ 1.5
DDX56-210ENST00000479440 PPLO60437 1756 aa24.42■■□□□ 1.5
DDX56-210ENST00000479440 BCL9LQ86UU0 1499 aa24.41■■□□□ 1.5
DDX56-210ENST00000479440 LRPPRCP42704 1394 aaKnown RBP24.41■■□□□ 1.5
DDX56-210ENST00000479440 ESCO1Q5FWF5 840 aa24.4■■□□□ 1.5
DDX56-210ENST00000479440 NAIPQ13075 1403 aa24.4■■□□□ 1.5
DDX56-210ENST00000479440 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.4■■□□□ 1.5
DDX56-210ENST00000479440 GJD4Q96KN9 370 aaPredicted RBP24.36■■□□□ 1.49
DDX56-210ENST00000479440 TECPR2O15040 1411 aa24.33■■□□□ 1.49
DDX56-210ENST00000479440 RRBP1Q9P2E9 1410 aaKnown RBP24.33■■□□□ 1.49
DDX56-210ENST00000479440 KIF1AQ12756 1690 aa24.33■■□□□ 1.49
DDX56-210ENST00000479440 SRCAPQ6ZRS2 3230 aa24.32■■□□□ 1.48
DDX56-210ENST00000479440 FOXO3O43524 673 aa24.32■■□□□ 1.48
DDX56-210ENST00000479440 BLMP54132 1417 aaPredicted RBP24.32■■□□□ 1.48
DDX56-210ENST00000479440 XPCQ01831 940 aaPredicted RBP24.31■■□□□ 1.48
DDX56-210ENST00000479440 RALGAPBQ86X10 1494 aa24.31■■□□□ 1.48
DDX56-210ENST00000479440 SLIT2O94813 1529 aa24.3■■□□□ 1.48
DDX56-210ENST00000479440 KNDC1Q76NI1 1749 aa24.3■■□□□ 1.48
DDX56-210ENST00000479440 GLI3P10071 1580 aa24.3■■□□□ 1.48
DDX56-210ENST00000479440 USP32Q8NFA0 1604 aa24.3■■□□□ 1.48
DDX56-210ENST00000479440 EP400Q96L91 3159 aa24.3■■□□□ 1.48
DDX56-210ENST00000479440 CCDC144AA2RUR9 1427 aa24.29■■□□□ 1.48
DDX56-210ENST00000479440 PPARGC1BQ86YN6 1023 aaKnown RBP24.29■■□□□ 1.48
DDX56-210ENST00000479440 SLC4A1APQ9BWU0 796 aaKnown RBP24.29■■□□□ 1.48
DDX56-210ENST00000479440 UNC5CLQ8IV45 518 aa24.28■■□□□ 1.48
DDX56-210ENST00000479440 FMN2Q9NZ56 1722 aa24.27■■□□□ 1.48
DDX56-210ENST00000479440 SPATA31A3Q5VYP0 1347 aa24.25■■□□□ 1.47
DDX56-210ENST00000479440 NUTM2FA1L443 756 aa24.24■■□□□ 1.47
DDX56-210ENST00000479440 SF3B2Q13435 895 aaKnown RBP24.23■■□□□ 1.47
DDX56-210ENST00000479440 STK26Q9P289 416 aa24.23■■□□□ 1.47
DDX56-210ENST00000479440 ADGRF5Q8IZF2 1346 aa24.23■■□□□ 1.47
DDX56-210ENST00000479440 ANKRD30BQ9BXX2 1392 aa24.23■■□□□ 1.47
DDX56-210ENST00000479440 IFT172Q9UG01 1749 aa24.22■■□□□ 1.47
DDX56-210ENST00000479440 ABCC11Q96J66 1382 aa24.22■■□□□ 1.47
DDX56-210ENST00000479440 WAPLQ7Z5K2 1190 aa24.22■■□□□ 1.47
DDX56-210ENST00000479440 TNS3Q68CZ2 1445 aa24.21■■□□□ 1.47
DDX56-210ENST00000479440 HAP1P54257 671 aaPredicted RBP24.2■■□□□ 1.46
DDX56-210ENST00000479440 PLEKHH1Q9ULM0 1364 aa24.19■■□□□ 1.46
DDX56-210ENST00000479440 LRP5O75197 1615 aa24.19■■□□□ 1.46
DDX56-210ENST00000479440 PIK3C2GO75747 1445 aa24.18■■□□□ 1.46
DDX56-210ENST00000479440 NWD2Q9ULI1 1742 aa24.18■■□□□ 1.46
DDX56-210ENST00000479440 PLCH1Q4KWH8 1693 aa24.18■■□□□ 1.46
DDX56-210ENST00000479440 BRWD3Q6RI45 1802 aa24.18■■□□□ 1.46
DDX56-210ENST00000479440 SPATA31E1Q6ZUB1 1445 aa24.17■■□□□ 1.46
DDX56-210ENST00000479440 YTHDC2Q9H6S0 1430 aaKnown RBP24.17■■□□□ 1.46
DDX56-210ENST00000479440 VPS72Q15906 364 aa24.16■■□□□ 1.46
DDX56-210ENST00000479440 KRT28Q7Z3Y7 464 aa24.16■■□□□ 1.46
DDX56-210ENST00000479440 DEFB132Q7Z7B7 95 aa24.16■■□□□ 1.46
DDX56-210ENST00000479440 SEPT12Q8IYM1 358 aa24.16■■□□□ 1.46
DDX56-210ENST00000479440 ABCA3Q99758 1704 aa24.15■■□□□ 1.46
DDX56-210ENST00000479440 PSME1Q06323 249 aa24.14■■□□□ 1.45
DDX56-210ENST00000479440 RGL3Q3MIN7 710 aa24.13■■□□□ 1.45
DDX56-210ENST00000479440 TMEM132EQ6IEE7 984 aa24.13■■□□□ 1.45
DDX56-210ENST00000479440 CCDC9Q9Y3X0 531 aaKnown RBP24.13■■□□□ 1.45
DDX56-210ENST00000479440 SBNO1A3KN83 1393 aa24.13■■□□□ 1.45
DDX56-210ENST00000479440 ARHGEF10O15013 1369 aa24.13■■□□□ 1.45
DDX56-210ENST00000479440 NRXN1Q9ULB1 1477 aa24.12■■□□□ 1.45
DDX56-210ENST00000479440 PHF8Q9UPP1 1060 aa24.11■■□□□ 1.45
DDX56-210ENST00000479440 KRT27Q7Z3Y8 459 aa24.1■■□□□ 1.45
DDX56-210ENST00000479440 SIRT1Q96EB6 747 aa24.09■■□□□ 1.45
DDX56-210ENST00000479440 ONECUT3O60422 494 aaPredicted RBP24.08■■□□□ 1.45
DDX56-210ENST00000479440 A0A0G2JS52 829 aa24.06■■□□□ 1.44
DDX56-210ENST00000479440 BAG6P46379 1132 aa24.06■■□□□ 1.44
DDX56-210ENST00000479440 MYT1Q01538 1121 aa24.06■■□□□ 1.44
DDX56-210ENST00000479440 CABLES1Q8TDN4 633 aa24.06■■□□□ 1.44
DDX56-210ENST00000479440 LMOD2Q6P5Q4 547 aa24.05■■□□□ 1.44
DDX56-210ENST00000479440 RGPD8O14715 1765 aaPredicted RBP24.05■■□□□ 1.44
DDX56-210ENST00000479440 DHX57Q6P158 1386 aaKnown RBP24.04■■□□□ 1.44
DDX56-210ENST00000479440 NRAPQ86VF7 1730 aa24.04■■□□□ 1.44
DDX56-210ENST00000479440 ANKARQ7Z5J8 1434 aa24.04■■□□□ 1.44
DDX56-210ENST00000479440 PLEKHG5O94827 1062 aa24.04■■□□□ 1.44
DDX56-210ENST00000479440 ADGRB2O60241 1585 aa24.02■■□□□ 1.44
DDX56-210ENST00000479440 RGPD1P0DJD0 1748 aa24.01■■□□□ 1.43
DDX56-210ENST00000479440 DLC1Q96QB1 1528 aa24■■□□□ 1.43
DDX56-210ENST00000479440 MPHOSPH9Q99550 1183 aa24■■□□□ 1.43
DDX56-210ENST00000479440 C14orf93Q9H972 538 aaKnown RBP24■■□□□ 1.43
DDX56-210ENST00000479440 COL14A1Q05707 1796 aaKnown RBP24■■□□□ 1.43
DDX56-210ENST00000479440 PSDA5PKW4 1024 aaPredicted RBP23.98■■□□□ 1.43
DDX56-210ENST00000479440 FAM83GA6ND36 823 aa23.98■■□□□ 1.43
DDX56-210ENST00000479440 FAM98CQ17RN3 349 aaKnown RBP23.98■■□□□ 1.43
DDX56-210ENST00000479440 PRAM1Q96QH2 718 aa23.98■■□□□ 1.43
DDX56-210ENST00000479440 TRPM3Q9HCF6 1732 aaPredicted RBP23.97■■□□□ 1.43
DDX56-210ENST00000479440 EIF3AQ14152 1382 aaKnown RBP23.96■■□□□ 1.43
DDX56-210ENST00000479440 HRCP23327 699 aa23.96■■□□□ 1.43
DDX56-210ENST00000479440 SAFB2Q14151 953 aaKnown RBP eCLIP23.96■■□□□ 1.43
DDX56-210ENST00000479440 GPRASP1Q5JY77 1395 aa23.95■■□□□ 1.42
DDX56-210ENST00000479440 PMFBP1Q8TBY8 1022 aa23.95■■□□□ 1.42
DDX56-210ENST00000479440 BTG4Q9NY30 223 aa23.95■■□□□ 1.42
DDX56-210ENST00000479440 ALS2Q96Q42 1657 aa23.95■■□□□ 1.42
DDX56-210ENST00000479440 CFAP70Q5T0N1 1121 aa23.94■■□□□ 1.42
DDX56-210ENST00000479440 POGKQ9P215 609 aa23.94■■□□□ 1.42
DDX56-210ENST00000479440 DISP2A7MBM2 1401 aa23.93■■□□□ 1.42
DDX56-210ENST00000479440 THSD7AQ9UPZ6 1657 aa23.92■■□□□ 1.42
DDX56-210ENST00000479440 TULP4Q9NRJ4 1543 aa23.91■■□□□ 1.42
DDX56-210ENST00000479440 TNS1Q9HBL0 1735 aaKnown RBP23.9■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms