RNA–Protein interactions for RNA: ENST00000477649.1

VMA21-203, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

TSL 3

Gene VMA21, Length 485 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-203ENST00000477649 PCDH10Q9P2E7 1040 aa10.79□□□□□ -0.68
VMA21-203ENST00000477649 ZMYM3Q14202 1370 aa10.78□□□□□ -0.68
VMA21-203ENST00000477649 PER1O15534 1290 aaPredicted RBP10.78□□□□□ -0.68
VMA21-203ENST00000477649 DCBLD2Q96PD2 775 aa10.78□□□□□ -0.68
VMA21-203ENST00000477649 STAG3Q9UJ98 1225 aa10.78□□□□□ -0.68
VMA21-203ENST00000477649 CLTCQ00610 1675 aaKnown RBP10.78□□□□□ -0.68
VMA21-203ENST00000477649 INSRP06213 1382 aa10.77□□□□□ -0.68
VMA21-203ENST00000477649 PARD3Q8TEW0 1356 aa10.77□□□□□ -0.68
VMA21-203ENST00000477649 KDM5AP29375 1690 aaKnown RBP10.77□□□□□ -0.69
VMA21-203ENST00000477649 CD44P16070 742 aaKnown RBP10.77□□□□□ -0.69
VMA21-203ENST00000477649 NLRP13Q86W25 1043 aa10.77□□□□□ -0.69
VMA21-203ENST00000477649 PANK3Q9H999 370 aa10.76□□□□□ -0.69
VMA21-203ENST00000477649 GTF3C3Q9Y5Q9 886 aa10.76□□□□□ -0.69
VMA21-203ENST00000477649 A2ML1A8K2U0 1454 aa10.75□□□□□ -0.69
VMA21-203ENST00000477649 FBXO31Q5XUX0 539 aaPredicted RBP10.75□□□□□ -0.69
VMA21-203ENST00000477649 TMC1Q8TDI8 760 aa10.75□□□□□ -0.69
VMA21-203ENST00000477649 KNSTRNQ9Y448 316 aa10.75□□□□□ -0.69
VMA21-203ENST00000477649 NINLQ9Y2I6 1382 aa10.75□□□□□ -0.69
VMA21-203ENST00000477649 NLRP1Q9C000 1473 aa10.74□□□□□ -0.69
VMA21-203ENST00000477649 EVC2Q86UK5 1308 aa10.74□□□□□ -0.69
VMA21-203ENST00000477649 TNRQ92752 1358 aa10.74□□□□□ -0.69
VMA21-203ENST00000477649 HNRNPUQ00839 825 aaKnown RBP eCLIP10.73□□□□□ -0.69
VMA21-203ENST00000477649 ILDR1Q86SU0 546 aaPredicted RBP10.73□□□□□ -0.69
VMA21-203ENST00000477649 ZBED9Q6R2W3 1325 aa10.73□□□□□ -0.69
VMA21-203ENST00000477649 CFAP65Q6ZU64 1925 aaKnown RBP10.72□□□□□ -0.69
VMA21-203ENST00000477649 MLECQ14165 292 aa10.72□□□□□ -0.69
VMA21-203ENST00000477649 SSUH2Q9Y2M2 353 aa10.72□□□□□ -0.69
VMA21-203ENST00000477649 RIMS2Q9UQ26 1411 aa10.72□□□□□ -0.69
VMA21-203ENST00000477649 ASXL1Q8IXJ9 1541 aa10.71□□□□□ -0.69
VMA21-203ENST00000477649 PNISRQ8TF01 805 aaKnown RBP10.71□□□□□ -0.69
VMA21-203ENST00000477649 SIRT1Q96EB6 747 aa10.71□□□□□ -0.69
VMA21-203ENST00000477649 DLC1Q96QB1 1528 aa10.71□□□□□ -0.69
VMA21-203ENST00000477649 TRAK1Q9UPV9 953 aa10.71□□□□□ -0.69
VMA21-203ENST00000477649 YTHDC2Q9H6S0 1430 aaKnown RBP10.7□□□□□ -0.7
VMA21-203ENST00000477649 LRPPRCP42704 1394 aaKnown RBP10.7□□□□□ -0.7
VMA21-203ENST00000477649 POTEB2H3BUK9 544 aa10.7□□□□□ -0.7
VMA21-203ENST00000477649 ALKQ9UM73 1620 aa10.69□□□□□ -0.7
VMA21-203ENST00000477649 ATAD2Q6PL18 1390 aa10.69□□□□□ -0.7
VMA21-203ENST00000477649 ABCC11Q96J66 1382 aa10.69□□□□□ -0.7
VMA21-203ENST00000477649 AMER1Q5JTC6 1135 aaPredicted RBP10.69□□□□□ -0.7
VMA21-203ENST00000477649 FAM9BQ8IZU0 186 aa10.69□□□□□ -0.7
VMA21-203ENST00000477649 CCDC184Q52MB2 194 aa10.68□□□□□ -0.7
VMA21-203ENST00000477649 TMEM132EQ6IEE7 984 aa10.68□□□□□ -0.7
VMA21-203ENST00000477649 QRICH2Q9H0J4 1663 aa10.68□□□□□ -0.7
VMA21-203ENST00000477649 ARHGEF28Q8N1W1 1705 aaKnown RBP10.67□□□□□ -0.7
VMA21-203ENST00000477649 NSD2O96028 1365 aa10.67□□□□□ -0.7
VMA21-203ENST00000477649 TMEM2Q9UHN6 1383 aa10.67□□□□□ -0.7
VMA21-203ENST00000477649 FOXD4L1Q9NU39 408 aa10.67□□□□□ -0.7
VMA21-203ENST00000477649 PTPRMP28827 1452 aa10.67□□□□□ -0.7
VMA21-203ENST00000477649 MYOM1P52179 1685 aa10.66□□□□□ -0.7
VMA21-203ENST00000477649 NEFLP07196 543 aa10.66□□□□□ -0.7
VMA21-203ENST00000477649 PRR29P0C7W0 189 aa10.66□□□□□ -0.7
VMA21-203ENST00000477649 POGKQ9P215 609 aa10.66□□□□□ -0.7
VMA21-203ENST00000477649 FAM135BQ49AJ0 1406 aa10.66□□□□□ -0.7
VMA21-203ENST00000477649 MYO5BQ9ULV0 1848 aa10.65□□□□□ -0.7
VMA21-203ENST00000477649 CC2D1BQ5T0F9 858 aaKnown RBP10.65□□□□□ -0.7
VMA21-203ENST00000477649 TECPR2O15040 1411 aa10.65□□□□□ -0.7
VMA21-203ENST00000477649 USP32Q8NFA0 1604 aa10.65□□□□□ -0.7
VMA21-203ENST00000477649 ANKRD36BQ8N2N9 1353 aa10.65□□□□□ -0.71
VMA21-203ENST00000477649 PLEKHG1Q9ULL1 1385 aa10.65□□□□□ -0.71
VMA21-203ENST00000477649 CGNL1Q0VF96 1302 aa10.64□□□□□ -0.71
VMA21-203ENST00000477649 PDE3BQ13370 1112 aa10.64□□□□□ -0.71
VMA21-203ENST00000477649 NUTM2DQ5VT03 806 aaPredicted RBP10.64□□□□□ -0.71
VMA21-203ENST00000477649 ERICH6BQ5W0A0 696 aa10.64□□□□□ -0.71
VMA21-203ENST00000477649 ZNF692Q9BU19 519 aaPredicted RBP10.64□□□□□ -0.71
VMA21-203ENST00000477649 EID1Q9Y6B2 187 aa10.64□□□□□ -0.71
VMA21-203ENST00000477649 THEMISQ8N1K5 641 aaPredicted RBP10.63□□□□□ -0.71
VMA21-203ENST00000477649 NGEFQ8N5V2 710 aa10.63□□□□□ -0.71
VMA21-203ENST00000477649 TERF2IPQ9NYB0 399 aa10.63□□□□□ -0.71
VMA21-203ENST00000477649 FARP1Q9Y4F1 1045 aaPredicted RBP10.63□□□□□ -0.71
VMA21-203ENST00000477649 UBR1Q8IWV7 1749 aa10.63□□□□□ -0.71
VMA21-203ENST00000477649 SLIT1O75093 1534 aa10.63□□□□□ -0.71
VMA21-203ENST00000477649 TULP4Q9NRJ4 1543 aa10.63□□□□□ -0.71
VMA21-203ENST00000477649 PPP2R1AP30153 589 aa10.62□□□□□ -0.71
VMA21-203ENST00000477649 PELP1Q8IZL8 1130 aaKnown RBP10.62□□□□□ -0.71
VMA21-203ENST00000477649 PRAM1Q96QH2 718 aa10.62□□□□□ -0.71
VMA21-203ENST00000477649 ARHGAP23Q9P227 1491 aa10.61□□□□□ -0.71
VMA21-203ENST00000477649 SMG6Q86US8 1419 aaKnown RBP10.61□□□□□ -0.71
VMA21-203ENST00000477649 STK26Q9P289 416 aa10.61□□□□□ -0.71
VMA21-203ENST00000477649 KNDC1Q76NI1 1749 aa10.61□□□□□ -0.71
VMA21-203ENST00000477649 NSD3Q9BZ95 1437 aa10.6□□□□□ -0.71
VMA21-203ENST00000477649 FER1L4A9Z1Z3 1794 aa10.6□□□□□ -0.71
VMA21-203ENST00000477649 SRPK2P78362 688 aaKnown RBP10.6□□□□□ -0.71
VMA21-203ENST00000477649 ZNF579Q8NAF0 562 aaKnown RBP10.6□□□□□ -0.71
VMA21-203ENST00000477649 CARD14Q9BXL6 1004 aa10.6□□□□□ -0.71
VMA21-203ENST00000477649 SETD1AO15047 1707 aaKnown RBP10.6□□□□□ -0.71
VMA21-203ENST00000477649 MED14O60244 1454 aa10.6□□□□□ -0.71
VMA21-203ENST00000477649 DIP2AQ14689 1571 aa10.6□□□□□ -0.71
VMA21-203ENST00000477649 C3P01024 1663 aa10.6□□□□□ -0.71
VMA21-203ENST00000477649 BLMP54132 1417 aaPredicted RBP10.59□□□□□ -0.71
VMA21-203ENST00000477649 NRXN3Q9Y4C0 1643 aa10.59□□□□□ -0.71
VMA21-203ENST00000477649 WDR43Q15061 677 aaKnown RBP eCLIP10.59□□□□□ -0.71
VMA21-203ENST00000477649 HDGFL2Q7Z4V5 671 aaPredicted RBP10.59□□□□□ -0.71
VMA21-203ENST00000477649 SLC12A5Q9H2X9 1139 aa10.59□□□□□ -0.71
VMA21-203ENST00000477649 TBX22Q9Y458 520 aa10.59□□□□□ -0.71
VMA21-203ENST00000477649 POLR3AO14802 1390 aaPredicted RBP10.59□□□□□ -0.71
VMA21-203ENST00000477649 CPS1P31327 1500 aa10.58□□□□□ -0.72
VMA21-203ENST00000477649 ATP7BP35670 1465 aa10.58□□□□□ -0.72
VMA21-203ENST00000477649 PIK3R4Q99570 1358 aa10.58□□□□□ -0.72
VMA21-203ENST00000477649 CNGB1Q14028 1251 aaPredicted RBP10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 112.5 ms