RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 AHDC1Q5TGY3 1603 aaPredicted RBP27.44■■□□□ 1.98
PTCD3-210ENST00000473829 C1orf167Q5SNV9 1468 aa27.43■■□□□ 1.98
PTCD3-210ENST00000473829 SIRT1Q96EB6 747 aa27.41■■□□□ 1.98
PTCD3-210ENST00000473829 ARHGEF28Q8N1W1 1705 aaKnown RBP27.41■■□□□ 1.98
PTCD3-210ENST00000473829 NHSL1Q5SYE7 1610 aa27.41■■□□□ 1.98
PTCD3-210ENST00000473829 PCGF6Q9BYE7 350 aa27.4■■□□□ 1.98
PTCD3-210ENST00000473829 FMN2Q9NZ56 1722 aa27.39■■□□□ 1.98
PTCD3-210ENST00000473829 PRAM1Q96QH2 718 aa27.39■■□□□ 1.98
PTCD3-210ENST00000473829 MED1Q15648 1581 aaPredicted RBP27.39■■□□□ 1.97
PTCD3-210ENST00000473829 TRAK1Q9UPV9 953 aa27.38■■□□□ 1.97
PTCD3-210ENST00000473829 SAFB2Q14151 953 aaKnown RBP eCLIP27.36■■□□□ 1.97
PTCD3-210ENST00000473829 TRPM1Q7Z4N2 1603 aa27.34■■□□□ 1.97
PTCD3-210ENST00000473829 NBPF1Q3BBV0 1214 aa27.34■■□□□ 1.97
PTCD3-210ENST00000473829 ADGRB2O60241 1585 aa27.34■■□□□ 1.97
PTCD3-210ENST00000473829 ORAI2Q96SN7 254 aa27.32■■□□□ 1.96
PTCD3-210ENST00000473829 DDX17Q92841 729 aaKnown RBP27.31■■□□□ 1.96
PTCD3-210ENST00000473829 POGKQ9P215 609 aa27.3■■□□□ 1.96
PTCD3-210ENST00000473829 DISP3Q9P2K9 1392 aa27.3■■□□□ 1.96
PTCD3-210ENST00000473829 RGPD8O14715 1765 aaPredicted RBP27.3■■□□□ 1.96
PTCD3-210ENST00000473829 NUTM2FA1L443 756 aa27.29■■□□□ 1.96
PTCD3-210ENST00000473829 SHPRHQ149N8 1683 aa27.27■■□□□ 1.96
PTCD3-210ENST00000473829 USP32Q8NFA0 1604 aa27.27■■□□□ 1.96
PTCD3-210ENST00000473829 TONSLQ96HA7 1378 aa27.25■■□□□ 1.95
PTCD3-210ENST00000473829 JCADQ9P266 1359 aa27.25■■□□□ 1.95
PTCD3-210ENST00000473829 MINK1Q8N4C8 1332 aaPredicted RBP27.24■■□□□ 1.95
PTCD3-210ENST00000473829 HIRIP3Q9BW71 556 aaPredicted RBP27.24■■□□□ 1.95
PTCD3-210ENST00000473829 NBPF8Q3BBV2 869 aa27.23■■□□□ 1.95
PTCD3-210ENST00000473829 ESCO1Q5FWF5 840 aa27.22■■□□□ 1.95
PTCD3-210ENST00000473829 KIF1AQ12756 1690 aa27.21■■□□□ 1.95
PTCD3-210ENST00000473829 PXDNQ92626 1479 aa27.18■■□□□ 1.94
PTCD3-210ENST00000473829 QRICH2Q9H0J4 1663 aa27.17■■□□□ 1.94
PTCD3-210ENST00000473829 SOS2Q07890 1332 aaPredicted RBP27.17■■□□□ 1.94
PTCD3-210ENST00000473829 ANKARQ7Z5J8 1434 aa27.17■■□□□ 1.94
PTCD3-210ENST00000473829 TULP4Q9NRJ4 1543 aa27.17■■□□□ 1.94
PTCD3-210ENST00000473829 LRP6O75581 1613 aa27.17■■□□□ 1.94
PTCD3-210ENST00000473829 ROCK2O75116 1388 aaKnown RBP27.17■■□□□ 1.94
PTCD3-210ENST00000473829 PRR36Q9H6K5 1346 aa27.15■■□□□ 1.94
PTCD3-210ENST00000473829 RALGAPBQ86X10 1494 aa27.13■■□□□ 1.93
PTCD3-210ENST00000473829 PNPLA6Q8IY17 1366 aa27.13■■□□□ 1.93
PTCD3-210ENST00000473829 WASLO00401 505 aaPredicted RBP27.13■■□□□ 1.93
PTCD3-210ENST00000473829 FOXO3O43524 673 aa27.13■■□□□ 1.93
PTCD3-210ENST00000473829 NPHP3Q7Z494 1330 aa27.13■■□□□ 1.93
PTCD3-210ENST00000473829 GPRASP1Q5JY77 1395 aa27.12■■□□□ 1.93
PTCD3-210ENST00000473829 LRRC59Q96AG4 307 aaKnown RBP27.12■■□□□ 1.93
PTCD3-210ENST00000473829 XPCQ01831 940 aaPredicted RBP27.11■■□□□ 1.93
PTCD3-210ENST00000473829 SPATA31A6Q5VVP1 1343 aa27.11■■□□□ 1.93
PTCD3-210ENST00000473829 CENPJQ9HC77 1338 aaPredicted RBP27.11■■□□□ 1.93
PTCD3-210ENST00000473829 PHF8Q9UPP1 1060 aa27.1■■□□□ 1.93
PTCD3-210ENST00000473829 ATP7BP35670 1465 aa27.1■■□□□ 1.93
PTCD3-210ENST00000473829 EIF3AQ14152 1382 aaKnown RBP27.09■■□□□ 1.93
PTCD3-210ENST00000473829 ITSN1Q15811 1721 aa27.08■■□□□ 1.93
PTCD3-210ENST00000473829 CLSPNQ9HAW4 1339 aa27.08■■□□□ 1.93
PTCD3-210ENST00000473829 TOPAZ1Q8N9V7 1692 aa27.08■■□□□ 1.92
PTCD3-210ENST00000473829 PHF23Q9BUL5 403 aaPredicted RBP27.07■■□□□ 1.92
PTCD3-210ENST00000473829 COL22A1Q8NFW1 1626 aaPredicted RBP27.07■■□□□ 1.92
PTCD3-210ENST00000473829 ILDR2Q71H61 639 aa27.06■■□□□ 1.92
PTCD3-210ENST00000473829 PMFBP1Q8TBY8 1022 aa27.04■■□□□ 1.92
PTCD3-210ENST00000473829 CDK19Q9BWU1 502 aa27.04■■□□□ 1.92
PTCD3-210ENST00000473829 RGS17Q9UGC6 210 aaPredicted RBP27.04■■□□□ 1.92
PTCD3-210ENST00000473829 NUTM2BA6NNL0 878 aaPredicted RBP27.03■■□□□ 1.92
PTCD3-210ENST00000473829 NUTM2EB1AL46 878 aaPredicted RBP27.03■■□□□ 1.92
PTCD3-210ENST00000473829 NUTM2AQ8IVF1 878 aaPredicted RBP27.03■■□□□ 1.92
PTCD3-210ENST00000473829 TRPM3Q9HCF6 1732 aaPredicted RBP27.02■■□□□ 1.92
PTCD3-210ENST00000473829 KRT28Q7Z3Y7 464 aa27.01■■□□□ 1.91
PTCD3-210ENST00000473829 NUDT16Q96DE0 195 aaKnown RBP27.01■■□□□ 1.91
PTCD3-210ENST00000473829 CARD11Q9BXL7 1154 aa27.01■■□□□ 1.91
PTCD3-210ENST00000473829 CCER1Q8TC90 406 aaPredicted RBP26.99■■□□□ 1.91
PTCD3-210ENST00000473829 SPATA31A3Q5VYP0 1347 aa26.97■■□□□ 1.91
PTCD3-210ENST00000473829 TNS3Q68CZ2 1445 aa26.97■■□□□ 1.91
PTCD3-210ENST00000473829 MEX3CQ5U5Q3 659 aaKnown RBP26.95■■□□□ 1.9
PTCD3-210ENST00000473829 PSME1Q06323 249 aa26.94■■□□□ 1.9
PTCD3-210ENST00000473829 CABP2Q9NPB3 220 aa26.94■■□□□ 1.9
PTCD3-210ENST00000473829 ALS2Q96Q42 1657 aa26.94■■□□□ 1.9
PTCD3-210ENST00000473829 SBNO1A3KN83 1393 aa26.94■■□□□ 1.9
PTCD3-210ENST00000473829 SRPK2P78362 688 aaKnown RBP26.93■■□□□ 1.9
PTCD3-210ENST00000473829 ABCA3Q99758 1704 aa26.92■■□□□ 1.9
PTCD3-210ENST00000473829 NGDNQ8NEJ9 315 aaKnown RBP26.91■■□□□ 1.9
PTCD3-210ENST00000473829 TIMELESSQ9UNS1 1208 aa26.91■■□□□ 1.9
PTCD3-210ENST00000473829 CCDC61Q9Y6R9 512 aa26.91■■□□□ 1.9
PTCD3-210ENST00000473829 MARF1Q9Y4F3 1742 aaKnown RBP26.9■■□□□ 1.9
PTCD3-210ENST00000473829 POLR3AO14802 1390 aaPredicted RBP26.9■■□□□ 1.9
PTCD3-210ENST00000473829 SBNO2Q9Y2G9 1366 aa26.9■■□□□ 1.9
PTCD3-210ENST00000473829 PPIP5K1Q6PFW1 1433 aa26.9■■□□□ 1.9
PTCD3-210ENST00000473829 EVC2Q86UK5 1308 aa26.9■■□□□ 1.9
PTCD3-210ENST00000473829 POTEAQ6S8J7 498 aa26.89■■□□□ 1.9
PTCD3-210ENST00000473829 ADAMTS2O95450 1211 aa26.88■■□□□ 1.89
PTCD3-210ENST00000473829 PLEKHG3A1L390 1219 aa26.87■■□□□ 1.89
PTCD3-210ENST00000473829 ACEP12821 1306 aa26.87■■□□□ 1.89
PTCD3-210ENST00000473829 C8orf37Q96NL8 207 aa26.86■■□□□ 1.89
PTCD3-210ENST00000473829 CRYBG1Q9Y4K1 1723 aa26.85■■□□□ 1.89
PTCD3-210ENST00000473829 ARHGEF10O15013 1369 aa26.84■■□□□ 1.89
PTCD3-210ENST00000473829 AFF2P51816 1311 aa26.84■■□□□ 1.89
PTCD3-210ENST00000473829 LMOD2Q6P5Q4 547 aa26.83■■□□□ 1.89
PTCD3-210ENST00000473829 CABLES1Q8TDN4 633 aa26.82■■□□□ 1.88
PTCD3-210ENST00000473829 PLEKHG5O94827 1062 aa26.8■■□□□ 1.88
PTCD3-210ENST00000473829 CABP1Q9NZU7 370 aa26.8■■□□□ 1.88
PTCD3-210ENST00000473829 USP47Q96K76 1375 aa26.8■■□□□ 1.88
PTCD3-210ENST00000473829 ST20-MTHFSA0A0A6YYL1 179 aa26.79■■□□□ 1.88
PTCD3-210ENST00000473829 PAK3O75914 559 aaPredicted RBP26.79■■□□□ 1.88
PTCD3-210ENST00000473829 TESK2Q96S53 571 aa26.79■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms