RNA–Protein interactions for RNA: ENST00000473782.1

HPS4-210, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-210ENST00000473782 PXDNQ92626 1479 aa25.06■■□□□ 1.6
HPS4-210ENST00000473782 SPHKAPQ2M3C7 1700 aa25.06■■□□□ 1.6
HPS4-210ENST00000473782 BLMP54132 1417 aaPredicted RBP25.04■■□□□ 1.6
HPS4-210ENST00000473782 GLI3P10071 1580 aa25.02■■□□□ 1.6
HPS4-210ENST00000473782 CLTCL1P53675 1640 aa25.02■■□□□ 1.6
HPS4-210ENST00000473782 RALGAPBQ86X10 1494 aa25.01■■□□□ 1.59
HPS4-210ENST00000473782 MARF1Q9Y4F3 1742 aaKnown RBP25■■□□□ 1.59
HPS4-210ENST00000473782 SLIT2O94813 1529 aa24.99■■□□□ 1.59
HPS4-210ENST00000473782 XPCQ01831 940 aaPredicted RBP24.99■■□□□ 1.59
HPS4-210ENST00000473782 NPHP3Q7Z494 1330 aa24.99■■□□□ 1.59
HPS4-210ENST00000473782 UNC5CLQ8IV45 518 aa24.98■■□□□ 1.59
HPS4-210ENST00000473782 LRP5O75197 1615 aa24.97■■□□□ 1.59
HPS4-210ENST00000473782 FOXO3O43524 673 aa24.97■■□□□ 1.59
HPS4-210ENST00000473782 ESCO1Q5FWF5 840 aa24.97■■□□□ 1.59
HPS4-210ENST00000473782 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.97■■□□□ 1.59
HPS4-210ENST00000473782 HFM1A2PYH4 1435 aa24.95■■□□□ 1.59
HPS4-210ENST00000473782 BRWD3Q6RI45 1802 aa24.93■■□□□ 1.58
HPS4-210ENST00000473782 VGFO15240 615 aaPredicted RBP24.91■■□□□ 1.58
HPS4-210ENST00000473782 SEPT12Q8IYM1 358 aa24.91■■□□□ 1.58
HPS4-210ENST00000473782 CDC42BPGQ6DT37 1551 aa24.91■■□□□ 1.58
HPS4-210ENST00000473782 ONECUT3O60422 494 aaPredicted RBP24.9■■□□□ 1.58
HPS4-210ENST00000473782 SPATA31A3Q5VYP0 1347 aa24.87■■□□□ 1.57
HPS4-210ENST00000473782 ITGAEP38570 1179 aa24.87■■□□□ 1.57
HPS4-210ENST00000473782 HRCP23327 699 aa24.86■■□□□ 1.57
HPS4-210ENST00000473782 PSDA5PKW4 1024 aaPredicted RBP24.85■■□□□ 1.57
HPS4-210ENST00000473782 NAIPQ13075 1403 aa24.85■■□□□ 1.57
HPS4-210ENST00000473782 KIF1BO60333 1816 aa24.84■■□□□ 1.57
HPS4-210ENST00000473782 NUTM2FA1L443 756 aa24.84■■□□□ 1.57
HPS4-210ENST00000473782 VPS72Q15906 364 aa24.84■■□□□ 1.57
HPS4-210ENST00000473782 LRPPRCP42704 1394 aaKnown RBP24.83■■□□□ 1.57
HPS4-210ENST00000473782 SF3B2Q13435 895 aaKnown RBP24.83■■□□□ 1.57
HPS4-210ENST00000473782 WAPLQ7Z5K2 1190 aa24.82■■□□□ 1.56
HPS4-210ENST00000473782 USP32Q8NFA0 1604 aa24.82■■□□□ 1.56
HPS4-210ENST00000473782 RPGRIP1LQ68CZ1 1315 aa24.82■■□□□ 1.56
HPS4-210ENST00000473782 KRT27Q7Z3Y8 459 aa24.8■■□□□ 1.56
HPS4-210ENST00000473782 PLEKHH1Q9ULM0 1364 aa24.79■■□□□ 1.56
HPS4-210ENST00000473782 TECPR2O15040 1411 aa24.78■■□□□ 1.56
HPS4-210ENST00000473782 CABLES1Q8TDN4 633 aa24.77■■□□□ 1.56
HPS4-210ENST00000473782 PPLO60437 1756 aa24.76■■□□□ 1.55
HPS4-210ENST00000473782 KRT28Q7Z3Y7 464 aa24.76■■□□□ 1.55
HPS4-210ENST00000473782 ADGRF5Q8IZF2 1346 aa24.74■■□□□ 1.55
HPS4-210ENST00000473782 CCDC144AA2RUR9 1427 aa24.73■■□□□ 1.55
HPS4-210ENST00000473782 BAG6P46379 1132 aa24.72■■□□□ 1.55
HPS4-210ENST00000473782 STK26Q9P289 416 aa24.72■■□□□ 1.55
HPS4-210ENST00000473782 PLCH1Q4KWH8 1693 aa24.72■■□□□ 1.55
HPS4-210ENST00000473782 ABCC11Q96J66 1382 aa24.71■■□□□ 1.55
HPS4-210ENST00000473782 FAM83GA6ND36 823 aa24.71■■□□□ 1.55
HPS4-210ENST00000473782 EN1Q05925 392 aaPredicted RBP24.71■■□□□ 1.55
HPS4-210ENST00000473782 NWD2Q9ULI1 1742 aa24.71■■□□□ 1.55
HPS4-210ENST00000473782 TNS3Q68CZ2 1445 aa24.7■■□□□ 1.55
HPS4-210ENST00000473782 FMN2Q9NZ56 1722 aa24.7■■□□□ 1.54
HPS4-210ENST00000473782 KIF1AQ12756 1690 aa24.69■■□□□ 1.54
HPS4-210ENST00000473782 TMEM132EQ6IEE7 984 aa24.68■■□□□ 1.54
HPS4-210ENST00000473782 CCDC9Q9Y3X0 531 aaKnown RBP24.68■■□□□ 1.54
HPS4-210ENST00000473782 R3HDM1Q15032 1099 aaKnown RBP24.67■■□□□ 1.54
HPS4-210ENST00000473782 FAM98CQ17RN3 349 aaKnown RBP24.66■■□□□ 1.54
HPS4-210ENST00000473782 PLEKHG5O94827 1062 aa24.65■■□□□ 1.54
HPS4-210ENST00000473782 FAM182BQ5T319 152 aa24.65■■□□□ 1.54
HPS4-210ENST00000473782 ABCA3Q99758 1704 aa24.65■■□□□ 1.54
HPS4-210ENST00000473782 SBNO1A3KN83 1393 aa24.65■■□□□ 1.54
HPS4-210ENST00000473782 RRBP1Q9P2E9 1410 aaKnown RBP24.64■■□□□ 1.54
HPS4-210ENST00000473782 PHF8Q9UPP1 1060 aa24.64■■□□□ 1.54
HPS4-210ENST00000473782 DISP2A7MBM2 1401 aa24.63■■□□□ 1.53
HPS4-210ENST00000473782 HAP1P54257 671 aaPredicted RBP24.63■■□□□ 1.53
HPS4-210ENST00000473782 KNDC1Q76NI1 1749 aa24.62■■□□□ 1.53
HPS4-210ENST00000473782 NRAPQ86VF7 1730 aa24.62■■□□□ 1.53
HPS4-210ENST00000473782 PSME1Q06323 249 aa24.61■■□□□ 1.53
HPS4-210ENST00000473782 NRXN1Q9ULB1 1477 aa24.61■■□□□ 1.53
HPS4-210ENST00000473782 RGPD8O14715 1765 aaPredicted RBP24.61■■□□□ 1.53
HPS4-210ENST00000473782 EZH2Q15910 746 aaKnown RBP24.59■■□□□ 1.53
HPS4-210ENST00000473782 SPATA31E1Q6ZUB1 1445 aa24.59■■□□□ 1.53
HPS4-210ENST00000473782 A0A0G2JS52 829 aa24.58■■□□□ 1.53
HPS4-210ENST00000473782 MYT1Q01538 1121 aa24.58■■□□□ 1.53
HPS4-210ENST00000473782 PPARGC1BQ86YN6 1023 aaKnown RBP24.58■■□□□ 1.53
HPS4-210ENST00000473782 SIRT1Q96EB6 747 aa24.58■■□□□ 1.53
HPS4-210ENST00000473782 BTG4Q9NY30 223 aa24.58■■□□□ 1.53
HPS4-210ENST00000473782 YTHDC2Q9H6S0 1430 aaKnown RBP24.58■■□□□ 1.53
HPS4-210ENST00000473782 ARHGEF10O15013 1369 aa24.57■■□□□ 1.52
HPS4-210ENST00000473782 CAMKK2Q96RR4 588 aa24.57■■□□□ 1.52
HPS4-210ENST00000473782 RGPD1P0DJD0 1748 aa24.57■■□□□ 1.52
HPS4-210ENST00000473782 TNS1Q9HBL0 1735 aaKnown RBP24.56■■□□□ 1.52
HPS4-210ENST00000473782 PIK3C2GO75747 1445 aa24.56■■□□□ 1.52
HPS4-210ENST00000473782 SLC4A1APQ9BWU0 796 aaKnown RBP24.56■■□□□ 1.52
HPS4-210ENST00000473782 LMOD2Q6P5Q4 547 aa24.55■■□□□ 1.52
HPS4-210ENST00000473782 SPATA31A5Q5VU36 1347 aa24.55■■□□□ 1.52
HPS4-210ENST00000473782 SPATA31A7Q8IWB4 1347 aa24.55■■□□□ 1.52
HPS4-210ENST00000473782 RGL3Q3MIN7 710 aa24.54■■□□□ 1.52
HPS4-210ENST00000473782 IFT172Q9UG01 1749 aa24.53■■□□□ 1.52
HPS4-210ENST00000473782 ANKRD30BQ9BXX2 1392 aa24.53■■□□□ 1.52
HPS4-210ENST00000473782 THSD7AQ9UPZ6 1657 aa24.53■■□□□ 1.52
HPS4-210ENST00000473782 YY1P25490 414 aa24.52■■□□□ 1.52
HPS4-210ENST00000473782 PMFBP1Q8TBY8 1022 aa24.51■■□□□ 1.51
HPS4-210ENST00000473782 TRPM3Q9HCF6 1732 aaPredicted RBP24.49■■□□□ 1.51
HPS4-210ENST00000473782 COL14A1Q05707 1796 aaKnown RBP24.47■■□□□ 1.51
HPS4-210ENST00000473782 C14orf93Q9H972 538 aaKnown RBP24.47■■□□□ 1.51
HPS4-210ENST00000473782 TRIM37O94972 964 aa24.46■■□□□ 1.51
HPS4-210ENST00000473782 ALS2Q96Q42 1657 aa24.46■■□□□ 1.51
HPS4-210ENST00000473782 PRAM1Q96QH2 718 aa24.44■■□□□ 1.5
HPS4-210ENST00000473782 SAFB2Q14151 953 aaKnown RBP eCLIP24.43■■□□□ 1.5
HPS4-210ENST00000473782 ANKARQ7Z5J8 1434 aa24.43■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms