RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 ACIN1Q9UKV3 1341 aaKnown RBP24.64■■□□□ 1.54
USP40-212ENST00000473191 MEX3CQ5U5Q3 659 aaKnown RBP24.64■■□□□ 1.54
USP40-212ENST00000473191 YTHDC2Q9H6S0 1430 aaKnown RBP24.63■■□□□ 1.53
USP40-212ENST00000473191 NUTM2FA1L443 756 aa24.63■■□□□ 1.53
USP40-212ENST00000473191 C14orf93Q9H972 538 aaKnown RBP24.63■■□□□ 1.53
USP40-212ENST00000473191 LAMC1P11047 1609 aa24.63■■□□□ 1.53
USP40-212ENST00000473191 PNPLA6Q8IY17 1366 aa24.63■■□□□ 1.53
USP40-212ENST00000473191 ABCC11Q96J66 1382 aa24.63■■□□□ 1.53
USP40-212ENST00000473191 MYOM2P54296 1465 aa24.63■■□□□ 1.53
USP40-212ENST00000473191 CDC42BPGQ6DT37 1551 aa24.63■■□□□ 1.53
USP40-212ENST00000473191 LRRC59Q96AG4 307 aaKnown RBP24.62■■□□□ 1.53
USP40-212ENST00000473191 SOS2Q07890 1332 aaPredicted RBP24.59■■□□□ 1.53
USP40-212ENST00000473191 ESCO1Q5FWF5 840 aa24.58■■□□□ 1.53
USP40-212ENST00000473191 XPCQ01831 940 aaPredicted RBP24.55■■□□□ 1.52
USP40-212ENST00000473191 KDM2AQ9Y2K7 1162 aa24.55■■□□□ 1.52
USP40-212ENST00000473191 HRCP23327 699 aa24.54■■□□□ 1.52
USP40-212ENST00000473191 FMN2Q9NZ56 1722 aa24.53■■□□□ 1.52
USP40-212ENST00000473191 SAFB2Q14151 953 aaKnown RBP eCLIP24.53■■□□□ 1.52
USP40-212ENST00000473191 ADGRB1O14514 1584 aa24.52■■□□□ 1.52
USP40-212ENST00000473191 FOXO3O43524 673 aa24.52■■□□□ 1.52
USP40-212ENST00000473191 DCAF11Q8TEB1 546 aa24.52■■□□□ 1.52
USP40-212ENST00000473191 AFF2P51816 1311 aa24.52■■□□□ 1.52
USP40-212ENST00000473191 PXDNQ92626 1479 aa24.51■■□□□ 1.51
USP40-212ENST00000473191 ZNF772Q68DY9 489 aaPredicted RBP24.51■■□□□ 1.51
USP40-212ENST00000473191 C8orf37Q96NL8 207 aa24.51■■□□□ 1.51
USP40-212ENST00000473191 DHX57Q6P158 1386 aaKnown RBP24.51■■□□□ 1.51
USP40-212ENST00000473191 ADAMTS2O95450 1211 aa24.5■■□□□ 1.51
USP40-212ENST00000473191 PRAM1Q96QH2 718 aa24.5■■□□□ 1.51
USP40-212ENST00000473191 RGPD8O14715 1765 aaPredicted RBP24.49■■□□□ 1.51
USP40-212ENST00000473191 SIRT1Q96EB6 747 aa24.49■■□□□ 1.51
USP40-212ENST00000473191 NPHP3Q7Z494 1330 aa24.46■■□□□ 1.51
USP40-212ENST00000473191 TRAK1Q9UPV9 953 aa24.46■■□□□ 1.51
USP40-212ENST00000473191 COL22A1Q8NFW1 1626 aaPredicted RBP24.46■■□□□ 1.51
USP40-212ENST00000473191 DLC1Q96QB1 1528 aa24.44■■□□□ 1.5
USP40-212ENST00000473191 RXRBP28702 533 aa24.42■■□□□ 1.5
USP40-212ENST00000473191 HIRIP3Q9BW71 556 aaPredicted RBP24.41■■□□□ 1.5
USP40-212ENST00000473191 USP32Q8NFA0 1604 aa24.41■■□□□ 1.5
USP40-212ENST00000473191 NGLY1Q96IV0 654 aa24.4■■□□□ 1.5
USP40-212ENST00000473191 POGKQ9P215 609 aa24.4■■□□□ 1.5
USP40-212ENST00000473191 KIF1AQ12756 1690 aa24.39■■□□□ 1.49
USP40-212ENST00000473191 QTRT2Q9H974 415 aaKnown RBP24.38■■□□□ 1.49
USP40-212ENST00000473191 PHF8Q9UPP1 1060 aa24.37■■□□□ 1.49
USP40-212ENST00000473191 MINK1Q8N4C8 1332 aaPredicted RBP24.36■■□□□ 1.49
USP40-212ENST00000473191 KRT28Q7Z3Y7 464 aa24.36■■□□□ 1.49
USP40-212ENST00000473191 ADGRB2O60241 1585 aa24.36■■□□□ 1.49
USP40-212ENST00000473191 RGS12O14924 1447 aa24.35■■□□□ 1.49
USP40-212ENST00000473191 SPATA31A3Q5VYP0 1347 aa24.35■■□□□ 1.49
USP40-212ENST00000473191 PMFBP1Q8TBY8 1022 aa24.34■■□□□ 1.49
USP40-212ENST00000473191 PRR36Q9H6K5 1346 aa24.34■■□□□ 1.49
USP40-212ENST00000473191 ARHGEF28Q8N1W1 1705 aaKnown RBP24.33■■□□□ 1.49
USP40-212ENST00000473191 USP21Q9UK80 565 aa24.33■■□□□ 1.49
USP40-212ENST00000473191 MARF1Q9Y4F3 1742 aaKnown RBP24.32■■□□□ 1.48
USP40-212ENST00000473191 FNBP4Q8N3X1 1017 aaPredicted RBP24.32■■□□□ 1.48
USP40-212ENST00000473191 CDK12Q9NYV4 1490 aaPredicted RBP24.32■■□□□ 1.48
USP40-212ENST00000473191 PLEKHG5O94827 1062 aa24.31■■□□□ 1.48
USP40-212ENST00000473191 RBM6P78332 1123 aaKnown RBP24.3■■□□□ 1.48
USP40-212ENST00000473191 UPF1Q92900 1129 aaKnown RBP eCLIP24.3■■□□□ 1.48
USP40-212ENST00000473191 STAC3Q96MF2 364 aa24.3■■□□□ 1.48
USP40-212ENST00000473191 NBPF1Q3BBV0 1214 aa24.29■■□□□ 1.48
USP40-212ENST00000473191 CABLES1Q8TDN4 633 aa24.29■■□□□ 1.48
USP40-212ENST00000473191 BCL9LQ86UU0 1499 aa24.29■■□□□ 1.48
USP40-212ENST00000473191 TNS3Q68CZ2 1445 aa24.28■■□□□ 1.48
USP40-212ENST00000473191 ANKARQ7Z5J8 1434 aa24.28■■□□□ 1.48
USP40-212ENST00000473191 WASLO00401 505 aaPredicted RBP24.27■■□□□ 1.48
USP40-212ENST00000473191 ATRNO75882 1429 aa24.27■■□□□ 1.48
USP40-212ENST00000473191 SIN3AQ96ST3 1273 aa24.26■■□□□ 1.47
USP40-212ENST00000473191 TULP4Q9NRJ4 1543 aa24.25■■□□□ 1.47
USP40-212ENST00000473191 PSME1Q06323 249 aa24.25■■□□□ 1.47
USP40-212ENST00000473191 TRPC5Q9UL62 973 aaPredicted RBP24.24■■□□□ 1.47
USP40-212ENST00000473191 TRPM3Q9HCF6 1732 aaPredicted RBP24.24■■□□□ 1.47
USP40-212ENST00000473191 LMOD2Q6P5Q4 547 aa24.23■■□□□ 1.47
USP40-212ENST00000473191 SBNO1A3KN83 1393 aa24.23■■□□□ 1.47
USP40-212ENST00000473191 ABCA3Q99758 1704 aa24.23■■□□□ 1.47
USP40-212ENST00000473191 KIAA1210Q9ULL0 1709 aa24.23■■□□□ 1.47
USP40-212ENST00000473191 SLIT2O94813 1529 aa24.2■■□□□ 1.47
USP40-212ENST00000473191 ATP7BP35670 1465 aa24.19■■□□□ 1.46
USP40-212ENST00000473191 L3MBTL2Q969R5 705 aa24.19■■□□□ 1.46
USP40-212ENST00000473191 ALS2Q96Q42 1657 aa24.18■■□□□ 1.46
USP40-212ENST00000473191 CDK19Q9BWU1 502 aa24.17■■□□□ 1.46
USP40-212ENST00000473191 NUDT16Q96DE0 195 aaKnown RBP24.16■■□□□ 1.46
USP40-212ENST00000473191 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.15■■□□□ 1.46
USP40-212ENST00000473191 HAP1P54257 671 aaPredicted RBP24.15■■□□□ 1.46
USP40-212ENST00000473191 NEUROD1Q13562 356 aa24.15■■□□□ 1.46
USP40-212ENST00000473191 UNC5CLQ8IV45 518 aa24.15■■□□□ 1.46
USP40-212ENST00000473191 GJD4Q96KN9 370 aaPredicted RBP24.15■■□□□ 1.46
USP40-212ENST00000473191 GLI3P10071 1580 aa24.15■■□□□ 1.46
USP40-212ENST00000473191 ARHGEF10O15013 1369 aa24.15■■□□□ 1.46
USP40-212ENST00000473191 EIF3AQ14152 1382 aaKnown RBP24.15■■□□□ 1.46
USP40-212ENST00000473191 PLCH1Q4KWH8 1693 aa24.14■■□□□ 1.45
USP40-212ENST00000473191 NGDNQ8NEJ9 315 aaKnown RBP24.13■■□□□ 1.45
USP40-212ENST00000473191 GPRASP1Q5JY77 1395 aa24.13■■□□□ 1.45
USP40-212ENST00000473191 FAM83GA6ND36 823 aa24.12■■□□□ 1.45
USP40-212ENST00000473191 ITSN1Q15811 1721 aa24.12■■□□□ 1.45
USP40-212ENST00000473191 RALGAPBQ86X10 1494 aa24.12■■□□□ 1.45
USP40-212ENST00000473191 TOPAZ1Q8N9V7 1692 aa24.11■■□□□ 1.45
USP40-212ENST00000473191 CRYBG1Q9Y4K1 1723 aa24.11■■□□□ 1.45
USP40-212ENST00000473191 PAK3O75914 559 aaPredicted RBP24.09■■□□□ 1.45
USP40-212ENST00000473191 TRPM1Q7Z4N2 1603 aa24.08■■□□□ 1.45
USP40-212ENST00000473191 QRICH2Q9H0J4 1663 aa24.07■■□□□ 1.44
USP40-212ENST00000473191 NWD2Q9ULI1 1742 aa24.06■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms