RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 STRCQ7RTU9 1775 aa17.61■□□□□ 0.41
VPS13D-205ENST00000473099 PRAM1Q96QH2 718 aa17.6■□□□□ 0.41
VPS13D-205ENST00000473099 NINLQ9Y2I6 1382 aa17.6■□□□□ 0.41
VPS13D-205ENST00000473099 ADGRB2O60241 1585 aa17.6■□□□□ 0.41
VPS13D-205ENST00000473099 PTCH1Q13635 1447 aa17.58■□□□□ 0.41
VPS13D-205ENST00000473099 SENP3Q9H4L4 574 aaPredicted RBP17.58■□□□□ 0.4
VPS13D-205ENST00000473099 PRKRIP1Q9H875 184 aaPredicted RBP17.57■□□□□ 0.4
VPS13D-205ENST00000473099 DMRT2Q9Y5R5 561 aa17.57■□□□□ 0.4
VPS13D-205ENST00000473099 ATAD2Q6PL18 1390 aa17.56■□□□□ 0.4
VPS13D-205ENST00000473099 USP32Q8NFA0 1604 aa17.56■□□□□ 0.4
VPS13D-205ENST00000473099 NPHP4O75161 1426 aaPredicted RBP17.55■□□□□ 0.4
VPS13D-205ENST00000473099 SLC26A8Q96RN1 970 aa17.54■□□□□ 0.4
VPS13D-205ENST00000473099 PANK3Q9H999 370 aa17.54■□□□□ 0.4
VPS13D-205ENST00000473099 ITSN1Q15811 1721 aa17.53■□□□□ 0.4
VPS13D-205ENST00000473099 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.53■□□□□ 0.4
VPS13D-205ENST00000473099 PER1O15534 1290 aaPredicted RBP17.53■□□□□ 0.4
VPS13D-205ENST00000473099 PTPRUQ92729 1446 aa17.53■□□□□ 0.4
VPS13D-205ENST00000473099 NPC1L1Q9UHC9 1359 aa17.53■□□□□ 0.4
VPS13D-205ENST00000473099 MINK1Q8N4C8 1332 aaPredicted RBP17.52■□□□□ 0.4
VPS13D-205ENST00000473099 SAFB2Q14151 953 aaKnown RBP eCLIP17.52■□□□□ 0.4
VPS13D-205ENST00000473099 RALBP1Q15311 655 aa17.52■□□□□ 0.4
VPS13D-205ENST00000473099 CERKQ8TCT0 537 aa17.51■□□□□ 0.39
VPS13D-205ENST00000473099 KNSTRNQ9Y448 316 aa17.51■□□□□ 0.39
VPS13D-205ENST00000473099 ROBO2Q9HCK4 1378 aa17.51■□□□□ 0.39
VPS13D-205ENST00000473099 NWD1Q149M9 1564 aa17.5■□□□□ 0.39
VPS13D-205ENST00000473099 SRPK2P78362 688 aaKnown RBP17.5■□□□□ 0.39
VPS13D-205ENST00000473099 AMOTL2Q9Y2J4 779 aa17.5■□□□□ 0.39
VPS13D-205ENST00000473099 PLEKHH1Q9ULM0 1364 aa17.5■□□□□ 0.39
VPS13D-205ENST00000473099 WAPLQ7Z5K2 1190 aa17.49■□□□□ 0.39
VPS13D-205ENST00000473099 ANKRD36BQ8N2N9 1353 aa17.49■□□□□ 0.39
VPS13D-205ENST00000473099 ANKRD26Q9UPS8 1709 aa17.49■□□□□ 0.39
VPS13D-205ENST00000473099 TOPAZ1Q8N9V7 1692 aa17.48■□□□□ 0.39
VPS13D-205ENST00000473099 AKAP12Q02952 1782 aa17.48■□□□□ 0.39
VPS13D-205ENST00000473099 PARD3Q8TEW0 1356 aa17.48■□□□□ 0.39
VPS13D-205ENST00000473099 KIF20BQ96Q89 1820 aa17.47■□□□□ 0.39
VPS13D-205ENST00000473099 CDK19Q9BWU1 502 aa17.47■□□□□ 0.39
VPS13D-205ENST00000473099 ATP7BP35670 1465 aa17.47■□□□□ 0.39
VPS13D-205ENST00000473099 WASLO00401 505 aaPredicted RBP17.46■□□□□ 0.39
VPS13D-205ENST00000473099 TMC1Q8TDI8 760 aa17.46■□□□□ 0.39
VPS13D-205ENST00000473099 CABP2Q9NPB3 220 aa17.46■□□□□ 0.39
VPS13D-205ENST00000473099 MON2Q7Z3U7 1717 aa17.45■□□□□ 0.38
VPS13D-205ENST00000473099 MYBBP1AQ9BQG0 1328 aaKnown RBP17.45■□□□□ 0.38
VPS13D-205ENST00000473099 NALCNQ8IZF0 1738 aa17.44■□□□□ 0.38
VPS13D-205ENST00000473099 FMN2Q9NZ56 1722 aa17.44■□□□□ 0.38
VPS13D-205ENST00000473099 TERF2IPQ9NYB0 399 aa17.44■□□□□ 0.38
VPS13D-205ENST00000473099 RGPD8O14715 1765 aaPredicted RBP17.43■□□□□ 0.38
VPS13D-205ENST00000473099 NKTRP30414 1462 aaKnown RBP17.43■□□□□ 0.38
VPS13D-205ENST00000473099 BRD4O60885 1362 aaPredicted RBP17.42■□□□□ 0.38
VPS13D-205ENST00000473099 NSD2O96028 1365 aa17.42■□□□□ 0.38
VPS13D-205ENST00000473099 CDC42BPGQ6DT37 1551 aa17.42■□□□□ 0.38
VPS13D-205ENST00000473099 AMER1Q5JTC6 1135 aaPredicted RBP17.42■□□□□ 0.38
VPS13D-205ENST00000473099 SLC12A5Q9H2X9 1139 aa17.42■□□□□ 0.38
VPS13D-205ENST00000473099 NCKAP5LQ9HCH0 1330 aa17.42■□□□□ 0.38
VPS13D-205ENST00000473099 NSD3Q9BZ95 1437 aa17.41■□□□□ 0.38
VPS13D-205ENST00000473099 HDGFL2Q7Z4V5 671 aaPredicted RBP17.4■□□□□ 0.38
VPS13D-205ENST00000473099 KCNA6P17658 529 aa17.39■□□□□ 0.37
VPS13D-205ENST00000473099 NLRP13Q86W25 1043 aa17.39■□□□□ 0.37
VPS13D-205ENST00000473099 MRS2Q9HD23 443 aa17.39■□□□□ 0.37
VPS13D-205ENST00000473099 CGNL1Q0VF96 1302 aa17.39■□□□□ 0.37
VPS13D-205ENST00000473099 A0A1W2PP64 1363 aa17.39■□□□□ 0.37
VPS13D-205ENST00000473099 PPIP5K1Q6PFW1 1433 aa17.38■□□□□ 0.37
VPS13D-205ENST00000473099 ANKARQ7Z5J8 1434 aa17.38■□□□□ 0.37
VPS13D-205ENST00000473099 CD163L1Q9NR16 1453 aa17.38■□□□□ 0.37
VPS13D-205ENST00000473099 CENPBP07199 599 aaPredicted RBP17.38■□□□□ 0.37
VPS13D-205ENST00000473099 CC2D1BQ5T0F9 858 aaKnown RBP17.38■□□□□ 0.37
VPS13D-205ENST00000473099 CARD14Q9BXL6 1004 aa17.38■□□□□ 0.37
VPS13D-205ENST00000473099 CCDC61Q9Y6R9 512 aa17.38■□□□□ 0.37
VPS13D-205ENST00000473099 LTBP4Q8N2S1 1624 aa17.37■□□□□ 0.37
VPS13D-205ENST00000473099 NUDT16Q96DE0 195 aaKnown RBP17.37■□□□□ 0.37
VPS13D-205ENST00000473099 IQSEC2Q5JU85 1478 aa17.37■□□□□ 0.37
VPS13D-205ENST00000473099 STRCP1A6NGW2 1772 aa17.36■□□□□ 0.37
VPS13D-205ENST00000473099 CPSF1Q10570 1443 aaKnown RBP17.36■□□□□ 0.37
VPS13D-205ENST00000473099 ADGRL3Q9HAR2 1447 aa17.36■□□□□ 0.37
VPS13D-205ENST00000473099 EDC4Q6P2E9 1401 aaKnown RBP17.34■□□□□ 0.37
VPS13D-205ENST00000473099 CABP1Q9NZU7 370 aa17.34■□□□□ 0.37
VPS13D-205ENST00000473099 NRKQ7Z2Y5 1582 aa17.33■□□□□ 0.37
VPS13D-205ENST00000473099 NCOA3Q9Y6Q9 1424 aa17.33■□□□□ 0.36
VPS13D-205ENST00000473099 CNGB1Q14028 1251 aaPredicted RBP17.33■□□□□ 0.36
VPS13D-205ENST00000473099 YTHDC1Q96MU7 727 aaKnown RBP17.33■□□□□ 0.36
VPS13D-205ENST00000473099 ZNF692Q9BU19 519 aaPredicted RBP17.33■□□□□ 0.36
VPS13D-205ENST00000473099 PRR36Q9H6K5 1346 aa17.3■□□□□ 0.36
VPS13D-205ENST00000473099 PLEKHG3A1L390 1219 aa17.3■□□□□ 0.36
VPS13D-205ENST00000473099 MAP2P11137 1827 aaKnown RBP17.3■□□□□ 0.36
VPS13D-205ENST00000473099 CCDC184Q52MB2 194 aa17.29■□□□□ 0.36
VPS13D-205ENST00000473099 MORC1Q86VD1 984 aa17.29■□□□□ 0.36
VPS13D-205ENST00000473099 XIRP1Q702N8 1843 aaKnown RBP17.28■□□□□ 0.36
VPS13D-205ENST00000473099 ZNF335Q9H4Z2 1342 aaPredicted RBP17.28■□□□□ 0.36
VPS13D-205ENST00000473099 PPP2R1AP30153 589 aa17.28■□□□□ 0.36
VPS13D-205ENST00000473099 INSRP06213 1382 aa17.28■□□□□ 0.36
VPS13D-205ENST00000473099 KIF1AQ12756 1690 aa17.27■□□□□ 0.36
VPS13D-205ENST00000473099 DCCP43146 1447 aa17.27■□□□□ 0.35
VPS13D-205ENST00000473099 PROSER2Q86WR7 435 aaPredicted RBP17.26■□□□□ 0.35
VPS13D-205ENST00000473099 POLR3AO14802 1390 aaPredicted RBP17.26■□□□□ 0.35
VPS13D-205ENST00000473099 PNISRQ8TF01 805 aaKnown RBP17.25■□□□□ 0.35
VPS13D-205ENST00000473099 USP54Q70EL1 1684 aa17.25■□□□□ 0.35
VPS13D-205ENST00000473099 USP6P35125 1406 aa17.24■□□□□ 0.35
VPS13D-205ENST00000473099 FAM9BQ8IZU0 186 aa17.24■□□□□ 0.35
VPS13D-205ENST00000473099 ACEP12821 1306 aa17.23■□□□□ 0.35
VPS13D-205ENST00000473099 FYB1O15117 783 aa17.23■□□□□ 0.35
VPS13D-205ENST00000473099 C14orf37Q86TY3 774 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms