RNA–Protein interactions for RNA: ENST00000472679.1

CLK1-209, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 461 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-209ENST00000472679 RTL5Q5HYW3 569 aaPredicted RBP12.09□□□□□ -0.47
CLK1-209ENST00000472679 TJAP1Q5JTD0 557 aa12.09□□□□□ -0.47
CLK1-209ENST00000472679 RNF19BQ6ZMZ0 732 aa12.09□□□□□ -0.47
CLK1-209ENST00000472679 GTF3C3Q9Y5Q9 886 aa12.09□□□□□ -0.47
CLK1-209ENST00000472679 NR1I2O75469 434 aa12.08□□□□□ -0.48
CLK1-209ENST00000472679 C6orf229H3BNL8 230 aa12.07□□□□□ -0.48
CLK1-209ENST00000472679 PRPF38BQ5VTL8 546 aaKnown RBP12.07□□□□□ -0.48
CLK1-209ENST00000472679 ZNF516Q92618 1163 aa12.07□□□□□ -0.48
CLK1-209ENST00000472679 THAP11Q96EK4 314 aa12.07□□□□□ -0.48
CLK1-209ENST00000472679 ZBTB3Q9H5J0 574 aa12.07□□□□□ -0.48
CLK1-209ENST00000472679 NUTM2BA6NNL0 878 aaPredicted RBP12.06□□□□□ -0.48
CLK1-209ENST00000472679 NUTM2EB1AL46 878 aaPredicted RBP12.06□□□□□ -0.48
CLK1-209ENST00000472679 MTMR2Q13614 643 aa12.06□□□□□ -0.48
CLK1-209ENST00000472679 NUTM2DQ5VT03 806 aaPredicted RBP12.06□□□□□ -0.48
CLK1-209ENST00000472679 PPP2R2DQ66LE6 453 aa12.06□□□□□ -0.48
CLK1-209ENST00000472679 BRICD5Q6PL45 260 aa12.06□□□□□ -0.48
CLK1-209ENST00000472679 NUTM2AQ8IVF1 878 aaPredicted RBP12.06□□□□□ -0.48
CLK1-209ENST00000472679 RFC5P40937 340 aa12.05□□□□□ -0.48
CLK1-209ENST00000472679 Q3C1V9 767 aa12.05□□□□□ -0.48
CLK1-209ENST00000472679 TLL1O43897 1013 aa12.04□□□□□ -0.48
CLK1-209ENST00000472679 ZPR1O75312 459 aa12.04□□□□□ -0.48
CLK1-209ENST00000472679 IL21Q9HBE4 155 aa12.03□□□□□ -0.48
CLK1-209ENST00000472679 SALL2Q9Y467 1007 aaPredicted RBP12.03□□□□□ -0.48
CLK1-209ENST00000472679 CFAP99D6REC4 459 aa12.02□□□□□ -0.49
CLK1-209ENST00000472679 FMNL1O95466 1100 aaPredicted RBP12.02□□□□□ -0.49
CLK1-209ENST00000472679 RETREG3Q86VR2 466 aa12□□□□□ -0.49
CLK1-209ENST00000472679 NKX2-3Q8TAU0 364 aa12□□□□□ -0.49
CLK1-209ENST00000472679 PRR7Q8TB68 274 aa12□□□□□ -0.49
CLK1-209ENST00000472679 USB1Q9BQ65 265 aaKnown RBP12□□□□□ -0.49
CLK1-209ENST00000472679 SPDYE5A6NIY4 337 aa11.99□□□□□ -0.49
CLK1-209ENST00000472679 FAM160A2Q8N612 972 aaPredicted RBP11.99□□□□□ -0.49
CLK1-209ENST00000472679 SPSB2Q99619 263 aa11.99□□□□□ -0.49
CLK1-209ENST00000472679 ITGBL1O95965 494 aaPredicted RBP11.97□□□□□ -0.49
CLK1-209ENST00000472679 AP1G2O75843 785 aa11.96□□□□□ -0.49
CLK1-209ENST00000472679 TSC1Q92574 1164 aa11.96□□□□□ -0.49
CLK1-209ENST00000472679 PRDM9Q9NQV7 894 aa11.96□□□□□ -0.49
CLK1-209ENST00000472679 ADH1BP00325 375 aa11.95□□□□□ -0.5
CLK1-209ENST00000472679 KCNC4Q03721 635 aa11.94□□□□□ -0.5
CLK1-209ENST00000472679 CTDSPL2Q05D32 466 aa11.94□□□□□ -0.5
CLK1-209ENST00000472679 TMEM259Q4ZIN3 620 aa11.94□□□□□ -0.5
CLK1-209ENST00000472679 MSS51Q4VC12 460 aa11.93□□□□□ -0.5
CLK1-209ENST00000472679 SNRKQ9NRH2 765 aa11.92□□□□□ -0.5
CLK1-209ENST00000472679 PER1O15534 1290 aaPredicted RBP11.91□□□□□ -0.5
CLK1-209ENST00000472679 USP17L8P0C7I0 530 aa11.9□□□□□ -0.5
CLK1-209ENST00000472679 JUNDP17535 347 aa11.9□□□□□ -0.5
CLK1-209ENST00000472679 BANK1Q8NDB2 785 aa11.9□□□□□ -0.5
CLK1-209ENST00000472679 HELBQ8NG08 1087 aaPredicted RBP11.9□□□□□ -0.5
CLK1-209ENST00000472679 S1PR4O95977 384 aa11.89□□□□□ -0.51
CLK1-209ENST00000472679 DESI1Q6ICB0 168 aa11.89□□□□□ -0.51
CLK1-209ENST00000472679 LRRN4Q8WUT4 740 aa11.89□□□□□ -0.51
CLK1-209ENST00000472679 SLC6A16Q9GZN6 736 aa11.89□□□□□ -0.51
CLK1-209ENST00000472679 DXOO77932 396 aaKnown RBP11.88□□□□□ -0.51
CLK1-209ENST00000472679 MMP16P51512 607 aa11.88□□□□□ -0.51
CLK1-209ENST00000472679 MCM6Q14566 821 aa11.88□□□□□ -0.51
CLK1-209ENST00000472679 LYPD8Q6UX82 237 aa11.87□□□□□ -0.51
CLK1-209ENST00000472679 MTMR14Q8NCE2 650 aa11.86□□□□□ -0.51
CLK1-209ENST00000472679 HMX1Q9NP08 348 aaPredicted RBP11.86□□□□□ -0.51
CLK1-209ENST00000472679 PLSCR2Q9NRY7 297 aa11.85□□□□□ -0.51
CLK1-209ENST00000472679 FLIIQ13045 1269 aa11.84□□□□□ -0.51
CLK1-209ENST00000472679 PPEF1O14829 653 aaPredicted RBP11.83□□□□□ -0.52
CLK1-209ENST00000472679 PTPRNQ16849 979 aa11.82□□□□□ -0.52
CLK1-209ENST00000472679 PPP1R18Q6NYC8 613 aa11.81□□□□□ -0.52
CLK1-209ENST00000472679 EPS8L1Q8TE68 723 aa11.81□□□□□ -0.52
CLK1-209ENST00000472679 GJD4Q96KN9 370 aaPredicted RBP11.81□□□□□ -0.52
CLK1-209ENST00000472679 PLA2G2EQ9NZK7 142 aa11.81□□□□□ -0.52
CLK1-209ENST00000472679 NUDT12Q9BQG2 462 aa11.8□□□□□ -0.52
CLK1-209ENST00000472679 TRIM34Q9BYJ4 488 aa11.8□□□□□ -0.52
CLK1-209ENST00000472679 RNF223E7ERA6 249 aa11.79□□□□□ -0.52
CLK1-209ENST00000472679 F12P00748 615 aaPredicted RBP11.79□□□□□ -0.52
CLK1-209ENST00000472679 IFFO2Q5TF58 517 aa11.79□□□□□ -0.52
CLK1-209ENST00000472679 MAP10Q9P2G4 905 aa11.79□□□□□ -0.52
CLK1-209ENST00000472679 CCNYL3P0C7X3 344 aa11.78□□□□□ -0.52
CLK1-209ENST00000472679 NR6A1Q15406 480 aa11.78□□□□□ -0.52
CLK1-209ENST00000472679 CCDC24Q8N4L8 307 aa11.78□□□□□ -0.52
CLK1-209ENST00000472679 TIMELESSQ9UNS1 1208 aa11.78□□□□□ -0.52
CLK1-209ENST00000472679 FCF1Q9Y324 198 aaKnown RBP11.78□□□□□ -0.52
CLK1-209ENST00000472679 PTCRAQ6ISU1 281 aaPredicted RBP11.77□□□□□ -0.53
CLK1-209ENST00000472679 POM121Q96HA1 1249 aa11.77□□□□□ -0.53
CLK1-209ENST00000472679 EVA1BQ9NVM1 165 aa11.77□□□□□ -0.53
CLK1-209ENST00000472679 CTHP32929 405 aa11.76□□□□□ -0.53
CLK1-209ENST00000472679 C14orf37Q86TY3 774 aa11.76□□□□□ -0.53
CLK1-209ENST00000472679 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.76□□□□□ -0.53
CLK1-209ENST00000472679 SOCS7O14512 581 aa11.75□□□□□ -0.53
CLK1-209ENST00000472679 KCNH2Q12809 1159 aa11.75□□□□□ -0.53
CLK1-209ENST00000472679 UBTFP17480 764 aaKnown RBP11.74□□□□□ -0.53
CLK1-209ENST00000472679 PLA2G2CQ5R387 149 aa11.74□□□□□ -0.53
CLK1-209ENST00000472679 CLUAP1Q96AJ1 413 aa11.74□□□□□ -0.53
CLK1-209ENST00000472679 GGCXP38435 758 aa11.73□□□□□ -0.53
CLK1-209ENST00000472679 TBC1D2BQ9UPU7 963 aa11.73□□□□□ -0.53
CLK1-209ENST00000472679 COG6Q9Y2V7 657 aa11.73□□□□□ -0.53
CLK1-209ENST00000472679 ANKLE1Q8NAG6 615 aa11.72□□□□□ -0.53
CLK1-209ENST00000472679 GDPD2Q9HCC8 539 aa11.72□□□□□ -0.53
CLK1-209ENST00000472679 GPR37L1O60883 481 aa11.71□□□□□ -0.53
CLK1-209ENST00000472679 UNC93B1Q9H1C4 597 aa11.7□□□□□ -0.54
CLK1-209ENST00000472679 A0A0G2JS52 829 aa11.69□□□□□ -0.54
CLK1-209ENST00000472679 EMID1Q96A84 441 aaPredicted RBP11.69□□□□□ -0.54
CLK1-209ENST00000472679 NDUFB9Q9Y6M9 179 aa11.69□□□□□ -0.54
CLK1-209ENST00000472679 APBB1O00213 710 aa11.68□□□□□ -0.54
CLK1-209ENST00000472679 ZMYND15Q9H091 742 aa11.67□□□□□ -0.54
CLK1-209ENST00000472679 FKBPLQ9UIM3 349 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 226.6 ms