RNA–Protein interactions for RNA: ENST00000472585.1

VCL-204, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-204ENST00000472585 ADGRL3Q9HAR2 1447 aa14.29□□□□□ -0.12
VCL-204ENST00000472585 PTCH1Q13635 1447 aa14.27□□□□□ -0.12
VCL-204ENST00000472585 ROBO2Q9HCK4 1378 aa14.27□□□□□ -0.12
VCL-204ENST00000472585 FNBP4Q8N3X1 1017 aaPredicted RBP14.27□□□□□ -0.13
VCL-204ENST00000472585 NALCNQ8IZF0 1738 aa14.27□□□□□ -0.13
VCL-204ENST00000472585 NEXMIFQ5QGS0 1516 aa14.26□□□□□ -0.13
VCL-204ENST00000472585 C1orf167Q5SNV9 1468 aa14.26□□□□□ -0.13
VCL-204ENST00000472585 ATRNO75882 1429 aa14.26□□□□□ -0.13
VCL-204ENST00000472585 SOS2Q07890 1332 aaPredicted RBP14.26□□□□□ -0.13
VCL-204ENST00000472585 CLTCL1P53675 1640 aa14.24□□□□□ -0.13
VCL-204ENST00000472585 LAMC1P11047 1609 aa14.23□□□□□ -0.13
VCL-204ENST00000472585 SF3B2Q13435 895 aaKnown RBP14.23□□□□□ -0.13
VCL-204ENST00000472585 SPHKAPQ2M3C7 1700 aa14.22□□□□□ -0.13
VCL-204ENST00000472585 MARF1Q9Y4F3 1742 aaKnown RBP14.21□□□□□ -0.13
VCL-204ENST00000472585 GJD4Q96KN9 370 aaPredicted RBP14.21□□□□□ -0.13
VCL-204ENST00000472585 RNF39Q9H2S5 420 aa14.21□□□□□ -0.13
VCL-204ENST00000472585 COL22A1Q8NFW1 1626 aaPredicted RBP14.21□□□□□ -0.13
VCL-204ENST00000472585 NAIPQ13075 1403 aa14.21□□□□□ -0.13
VCL-204ENST00000472585 BLMP54132 1417 aaPredicted RBP14.2□□□□□ -0.14
VCL-204ENST00000472585 VGFO15240 615 aaPredicted RBP14.19□□□□□ -0.14
VCL-204ENST00000472585 BCL9LQ86UU0 1499 aa14.18□□□□□ -0.14
VCL-204ENST00000472585 LRP5O75197 1615 aa14.17□□□□□ -0.14
VCL-204ENST00000472585 XPCQ01831 940 aaPredicted RBP14.17□□□□□ -0.14
VCL-204ENST00000472585 DEFB132Q7Z7B7 95 aa14.17□□□□□ -0.14
VCL-204ENST00000472585 NPHP3Q7Z494 1330 aa14.16□□□□□ -0.14
VCL-204ENST00000472585 PRAG1Q86YV5 1406 aa14.16□□□□□ -0.14
VCL-204ENST00000472585 MYOM2P54296 1465 aa14.16□□□□□ -0.14
VCL-204ENST00000472585 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.15□□□□□ -0.14
VCL-204ENST00000472585 BRWD3Q6RI45 1802 aa14.15□□□□□ -0.14
VCL-204ENST00000472585 FOXO3O43524 673 aa14.15□□□□□ -0.14
VCL-204ENST00000472585 SLC4A2P04920 1241 aa14.15□□□□□ -0.14
VCL-204ENST00000472585 ESCO1Q5FWF5 840 aa14.15□□□□□ -0.14
VCL-204ENST00000472585 WAPLQ7Z5K2 1190 aa14.15□□□□□ -0.14
VCL-204ENST00000472585 RRBP1Q9P2E9 1410 aaKnown RBP14.15□□□□□ -0.14
VCL-204ENST00000472585 RPGRIP1LQ68CZ1 1315 aa14.15□□□□□ -0.15
VCL-204ENST00000472585 ADGRF5Q8IZF2 1346 aa14.15□□□□□ -0.15
VCL-204ENST00000472585 UNC5CLQ8IV45 518 aa14.14□□□□□ -0.15
VCL-204ENST00000472585 KIF1BO60333 1816 aa14.13□□□□□ -0.15
VCL-204ENST00000472585 NUTM2FA1L443 756 aa14.13□□□□□ -0.15
VCL-204ENST00000472585 HFM1A2PYH4 1435 aa14.13□□□□□ -0.15
VCL-204ENST00000472585 RALGAPBQ86X10 1494 aa14.12□□□□□ -0.15
VCL-204ENST00000472585 PXDNQ92626 1479 aa14.12□□□□□ -0.15
VCL-204ENST00000472585 LRPPRCP42704 1394 aaKnown RBP14.12□□□□□ -0.15
VCL-204ENST00000472585 PLEKHH1Q9ULM0 1364 aa14.12□□□□□ -0.15
VCL-204ENST00000472585 GLI3P10071 1580 aa14.11□□□□□ -0.15
VCL-204ENST00000472585 TMEM132EQ6IEE7 984 aa14.11□□□□□ -0.15
VCL-204ENST00000472585 STK26Q9P289 416 aa14.11□□□□□ -0.15
VCL-204ENST00000472585 PSDA5PKW4 1024 aaPredicted RBP14.1□□□□□ -0.15
VCL-204ENST00000472585 SEPT12Q8IYM1 358 aa14.1□□□□□ -0.15
VCL-204ENST00000472585 BAG6P46379 1132 aa14.09□□□□□ -0.15
VCL-204ENST00000472585 HAP1P54257 671 aaPredicted RBP14.09□□□□□ -0.15
VCL-204ENST00000472585 RGL3Q3MIN7 710 aa14.09□□□□□ -0.15
VCL-204ENST00000472585 CCDC9Q9Y3X0 531 aaKnown RBP14.09□□□□□ -0.15
VCL-204ENST00000472585 C1QBPQ07021 282 aaKnown RBP14.08□□□□□ -0.16
VCL-204ENST00000472585 SLIT2O94813 1529 aa14.07□□□□□ -0.16
VCL-204ENST00000472585 A0A0G2JS52 829 aa14.07□□□□□ -0.16
VCL-204ENST00000472585 HRCP23327 699 aa14.07□□□□□ -0.16
VCL-204ENST00000472585 MYT1Q01538 1121 aa14.07□□□□□ -0.16
VCL-204ENST00000472585 CACNB1Q02641 598 aaPredicted RBP14.07□□□□□ -0.16
VCL-204ENST00000472585 KRT27Q7Z3Y8 459 aa14.07□□□□□ -0.16
VCL-204ENST00000472585 SPATA31E1Q6ZUB1 1445 aa14.07□□□□□ -0.16
VCL-204ENST00000472585 CDC42BPGQ6DT37 1551 aa14.06□□□□□ -0.16
VCL-204ENST00000472585 SPATA31A3Q5VYP0 1347 aa14.06□□□□□ -0.16
VCL-204ENST00000472585 ABCC11Q96J66 1382 aa14.06□□□□□ -0.16
VCL-204ENST00000472585 PPLO60437 1756 aa14.06□□□□□ -0.16
VCL-204ENST00000472585 TECPR2O15040 1411 aa14.06□□□□□ -0.16
VCL-204ENST00000472585 USP32Q8NFA0 1604 aa14.04□□□□□ -0.16
VCL-204ENST00000472585 VPS72Q15906 364 aa14.04□□□□□ -0.16
VCL-204ENST00000472585 KRT28Q7Z3Y7 464 aa14.04□□□□□ -0.16
VCL-204ENST00000472585 CABLES1Q8TDN4 633 aa14.04□□□□□ -0.16
VCL-204ENST00000472585 U3KPZ7 1027 aaPredicted RBP14.04□□□□□ -0.16
VCL-204ENST00000472585 NWD2Q9ULI1 1742 aa14.02□□□□□ -0.16
VCL-204ENST00000472585 ONECUT3O60422 494 aaPredicted RBP14.02□□□□□ -0.17
VCL-204ENST00000472585 PLEKHG5O94827 1062 aa14.02□□□□□ -0.17
VCL-204ENST00000472585 PLCH1Q4KWH8 1693 aa14.01□□□□□ -0.17
VCL-204ENST00000472585 CCDC144AA2RUR9 1427 aa14.01□□□□□ -0.17
VCL-204ENST00000472585 MPHOSPH9Q99550 1183 aa14.01□□□□□ -0.17
VCL-204ENST00000472585 KIF1AQ12756 1690 aa14.01□□□□□ -0.17
VCL-204ENST00000472585 PIK3C2GO75747 1445 aa14□□□□□ -0.17
VCL-204ENST00000472585 YTHDC2Q9H6S0 1430 aaKnown RBP14□□□□□ -0.17
VCL-204ENST00000472585 PSME1Q06323 249 aa14□□□□□ -0.17
VCL-204ENST00000472585 R3HDM1Q15032 1099 aaKnown RBP14□□□□□ -0.17
VCL-204ENST00000472585 C14orf93Q9H972 538 aaKnown RBP14□□□□□ -0.17
VCL-204ENST00000472585 ANKRD30BQ9BXX2 1392 aa13.99□□□□□ -0.17
VCL-204ENST00000472585 RGPD1P0DJD0 1748 aa13.99□□□□□ -0.17
VCL-204ENST00000472585 YY1P25490 414 aa13.99□□□□□ -0.17
VCL-204ENST00000472585 EN1Q05925 392 aaPredicted RBP13.99□□□□□ -0.17
VCL-204ENST00000472585 CFAP70Q5T0N1 1121 aa13.99□□□□□ -0.17
VCL-204ENST00000472585 LMOD2Q6P5Q4 547 aa13.99□□□□□ -0.17
VCL-204ENST00000472585 SIRT1Q96EB6 747 aa13.99□□□□□ -0.17
VCL-204ENST00000472585 PHF8Q9UPP1 1060 aa13.98□□□□□ -0.17
VCL-204ENST00000472585 FAM83GA6ND36 823 aa13.97□□□□□ -0.17
VCL-204ENST00000472585 FAM98CQ17RN3 349 aaKnown RBP13.97□□□□□ -0.17
VCL-204ENST00000472585 FMN2Q9NZ56 1722 aa13.96□□□□□ -0.17
VCL-204ENST00000472585 SAFB2Q14151 953 aaKnown RBP eCLIP13.96□□□□□ -0.17
VCL-204ENST00000472585 FOXD4L1Q9NU39 408 aa13.96□□□□□ -0.17
VCL-204ENST00000472585 TNS3Q68CZ2 1445 aa13.96□□□□□ -0.18
VCL-204ENST00000472585 PMFBP1Q8TBY8 1022 aa13.95□□□□□ -0.18
VCL-204ENST00000472585 PRAM1Q96QH2 718 aa13.95□□□□□ -0.18
VCL-204ENST00000472585 RGPD8O14715 1765 aaPredicted RBP13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms