RNA–Protein interactions for RNA: ENST00000472119.1

SCN9A-206, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 2

Gene SCN9A, Length 905 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-206ENST00000472119 J3QL48 77 aa13.5□□□□□ -0.25
SCN9A-206ENST00000472119 BRICD5Q6PL45 260 aa13.5□□□□□ -0.25
SCN9A-206ENST00000472119 NLRP7Q8WX94 980 aa13.5□□□□□ -0.25
SCN9A-206ENST00000472119 SEMA3EO15041 775 aa13.49□□□□□ -0.25
SCN9A-206ENST00000472119 RNF19BQ6ZMZ0 732 aa13.49□□□□□ -0.25
SCN9A-206ENST00000472119 SALL2Q9Y467 1007 aaPredicted RBP13.49□□□□□ -0.25
SCN9A-206ENST00000472119 GCGRP47871 477 aa13.48□□□□□ -0.25
SCN9A-206ENST00000472119 TRIM32Q13049 653 aa13.48□□□□□ -0.25
SCN9A-206ENST00000472119 MSS51Q4VC12 460 aa13.48□□□□□ -0.25
SCN9A-206ENST00000472119 MRGPRX2Q96LB1 330 aa13.48□□□□□ -0.25
SCN9A-206ENST00000472119 TSHZ2Q9NRE2 1034 aa13.47□□□□□ -0.25
SCN9A-206ENST00000472119 HPS1Q92902 700 aa13.45□□□□□ -0.26
SCN9A-206ENST00000472119 SULF1Q8IWU6 871 aa13.44□□□□□ -0.26
SCN9A-206ENST00000472119 KIFC2Q96AC6 838 aa13.43□□□□□ -0.26
SCN9A-206ENST00000472119 GNPATO15228 680 aa13.41□□□□□ -0.26
SCN9A-206ENST00000472119 GRIPAP1Q4V328 841 aa13.41□□□□□ -0.26
SCN9A-206ENST00000472119 RBM26Q5T8P6 1007 aaKnown RBP13.41□□□□□ -0.26
SCN9A-206ENST00000472119 REPIN1Q9BWE0 567 aaKnown RBP13.4□□□□□ -0.26
SCN9A-206ENST00000472119 P3H3Q8IVL6 736 aa13.39□□□□□ -0.27
SCN9A-206ENST00000472119 FAM181BA6NEQ2 426 aa13.38□□□□□ -0.27
SCN9A-206ENST00000472119 SLC16A10Q8TF71 515 aa13.38□□□□□ -0.27
SCN9A-206ENST00000472119 MMP16P51512 607 aa13.37□□□□□ -0.27
SCN9A-206ENST00000472119 Q3C1V9 767 aa13.36□□□□□ -0.27
SCN9A-206ENST00000472119 CCDC24Q8N4L8 307 aa13.35□□□□□ -0.27
SCN9A-206ENST00000472119 RC3H1Q5TC82 1133 aaKnown RBP13.34□□□□□ -0.27
SCN9A-206ENST00000472119 PHOX2BQ99453 314 aa13.34□□□□□ -0.27
SCN9A-206ENST00000472119 AMER1Q5JTC6 1135 aaPredicted RBP13.33□□□□□ -0.28
SCN9A-206ENST00000472119 NXF1Q9UBU9 619 aaKnown RBP13.32□□□□□ -0.28
SCN9A-206ENST00000472119 GMPRP36959 345 aa13.31□□□□□ -0.28
SCN9A-206ENST00000472119 USB1Q9BQ65 265 aaKnown RBP13.31□□□□□ -0.28
SCN9A-206ENST00000472119 GPR37O15354 613 aa13.3□□□□□ -0.28
SCN9A-206ENST00000472119 DXOO77932 396 aaKnown RBP13.3□□□□□ -0.28
SCN9A-206ENST00000472119 ALDH1A1P00352 501 aa13.3□□□□□ -0.28
SCN9A-206ENST00000472119 SKOR1P84550 965 aa13.3□□□□□ -0.28
SCN9A-206ENST00000472119 ZSCAN1Q8NBB4 408 aa13.29□□□□□ -0.28
SCN9A-206ENST00000472119 SMYD5Q6GMV2 418 aa13.28□□□□□ -0.28
SCN9A-206ENST00000472119 WNT7BP56706 349 aa13.27□□□□□ -0.29
SCN9A-206ENST00000472119 TESPA1A2RU30 521 aaPredicted RBP13.26□□□□□ -0.29
SCN9A-206ENST00000472119 BMP1P13497 986 aa13.26□□□□□ -0.29
SCN9A-206ENST00000472119 VEGFBP49765 207 aa13.26□□□□□ -0.29
SCN9A-206ENST00000472119 IRF7Q92985 503 aa13.26□□□□□ -0.29
SCN9A-206ENST00000472119 RTN4Q9NQC3 1192 aaKnown RBP13.24□□□□□ -0.29
SCN9A-206ENST00000472119 ZCCHC6Q5VYS8 1495 aaKnown RBP13.23□□□□□ -0.29
SCN9A-206ENST00000472119 LORP23490 312 aaPredicted RBP13.22□□□□□ -0.29
SCN9A-206ENST00000472119 KDM4AO75164 1064 aa13.21□□□□□ -0.29
SCN9A-206ENST00000472119 CD46P15529 392 aa13.21□□□□□ -0.29
SCN9A-206ENST00000472119 TRIM46Q7Z4K8 759 aa13.21□□□□□ -0.29
SCN9A-206ENST00000472119 HLA-CQ95604 372 aa13.21□□□□□ -0.29
SCN9A-206ENST00000472119 CAPN5O15484 640 aaPredicted RBP13.2□□□□□ -0.3
SCN9A-206ENST00000472119 NPAS3Q8IXF0 933 aa13.19□□□□□ -0.3
SCN9A-206ENST00000472119 WASF2Q9Y6W5 498 aa13.19□□□□□ -0.3
SCN9A-206ENST00000472119 LOC100996750A0A140TA64 210 aa13.18□□□□□ -0.3
SCN9A-206ENST00000472119 EHBP1Q8NDI1 1231 aa13.18□□□□□ -0.3
SCN9A-206ENST00000472119 KRTAP4-6Q9BYQ5 205 aa13.18□□□□□ -0.3
SCN9A-206ENST00000472119 NACADO15069 1562 aa13.16□□□□□ -0.3
SCN9A-206ENST00000472119 H3BM21 787 aa13.16□□□□□ -0.3
SCN9A-206ENST00000472119 RB1CC1Q8TDY2 1594 aa13.15□□□□□ -0.3
SCN9A-206ENST00000472119 ERBB4Q15303 1308 aa13.15□□□□□ -0.3
SCN9A-206ENST00000472119 JUNDP17535 347 aa13.14□□□□□ -0.31
SCN9A-206ENST00000472119 SIAH2O43255 324 aa13.13□□□□□ -0.31
SCN9A-206ENST00000472119 USP46P62068 366 aa13.13□□□□□ -0.31
SCN9A-206ENST00000472119 GPIHBP1Q8IV16 184 aa13.12□□□□□ -0.31
SCN9A-206ENST00000472119 GUCA2AQ02747 115 aa13.11□□□□□ -0.31
SCN9A-206ENST00000472119 HOXA2O43364 376 aa13.1□□□□□ -0.31
SCN9A-206ENST00000472119 PTCRAQ6ISU1 281 aaPredicted RBP13.1□□□□□ -0.31
SCN9A-206ENST00000472119 SYMPKQ92797 1274 aaKnown RBP13.1□□□□□ -0.31
SCN9A-206ENST00000472119 ZFP42Q96MM3 310 aa13.1□□□□□ -0.31
SCN9A-206ENST00000472119 NUDT12Q9BQG2 462 aa13.1□□□□□ -0.31
SCN9A-206ENST00000472119 MYO15BQ96JP2 1530 aa13.09□□□□□ -0.31
SCN9A-206ENST00000472119 DCAF1Q9Y4B6 1507 aa13.08□□□□□ -0.31
SCN9A-206ENST00000472119 MDM2Q00987 491 aaPredicted RBP13.06□□□□□ -0.32
SCN9A-206ENST00000472119 SH3BP2P78314 561 aa13.04□□□□□ -0.32
SCN9A-206ENST00000472119 RETREG3Q86VR2 466 aa13.02□□□□□ -0.33
SCN9A-206ENST00000472119 TLL2Q9Y6L7 1015 aa13.02□□□□□ -0.33
SCN9A-206ENST00000472119 SUZ12Q15022 739 aaKnown RBP13.01□□□□□ -0.33
SCN9A-206ENST00000472119 SOBPA7XYQ1 873 aa12.99□□□□□ -0.33
SCN9A-206ENST00000472119 MAP2K5Q13163 448 aa12.99□□□□□ -0.33
SCN9A-206ENST00000472119 LINC01559Q495D7 138 aa12.99□□□□□ -0.33
SCN9A-206ENST00000472119 MRPL14Q6P1L8 145 aaKnown RBP12.99□□□□□ -0.33
SCN9A-206ENST00000472119 PURBQ96QR8 312 aaKnown RBP12.99□□□□□ -0.33
SCN9A-206ENST00000472119 CCNYL3P0C7X3 344 aa12.98□□□□□ -0.33
SCN9A-206ENST00000472119 SCARF1Q14162 830 aa12.98□□□□□ -0.33
SCN9A-206ENST00000472119 NNTQ13423 1086 aa12.97□□□□□ -0.33
SCN9A-206ENST00000472119 MS4A1P11836 297 aa12.96□□□□□ -0.33
SCN9A-206ENST00000472119 NUTM1Q86Y26 1132 aa12.96□□□□□ -0.33
SCN9A-206ENST00000472119 C6orf229H3BNL8 230 aa12.95□□□□□ -0.34
SCN9A-206ENST00000472119 UNC93B1Q9H1C4 597 aa12.95□□□□□ -0.34
SCN9A-206ENST00000472119 PLEKHG3A1L390 1219 aa12.94□□□□□ -0.34
SCN9A-206ENST00000472119 BAP1Q92560 729 aa12.94□□□□□ -0.34
SCN9A-206ENST00000472119 IRF6O14896 467 aa12.93□□□□□ -0.34
SCN9A-206ENST00000472119 WDR4P57081 412 aaKnown RBP12.93□□□□□ -0.34
SCN9A-206ENST00000472119 VSIG8P0DPA2 414 aa12.92□□□□□ -0.34
SCN9A-206ENST00000472119 KCTD17Q8N5Z5 321 aa12.92□□□□□ -0.34
SCN9A-206ENST00000472119 FDX1P10109 184 aa12.91□□□□□ -0.34
SCN9A-206ENST00000472119 TIMP2P16035 220 aa12.91□□□□□ -0.34
SCN9A-206ENST00000472119 ADH1CP00326 375 aa12.9□□□□□ -0.34
SCN9A-206ENST00000472119 VARSP26640 1264 aaKnown RBP12.89□□□□□ -0.35
SCN9A-206ENST00000472119 PTPRNQ16849 979 aa12.89□□□□□ -0.35
SCN9A-206ENST00000472119 ZNF511Q8NB15 262 aa12.89□□□□□ -0.35
SCN9A-206ENST00000472119 GPCPD1Q9NPB8 672 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms