RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 AFF2P51816 1311 aa25.93■■□□□ 1.74
COL7A1-208ENST00000470076 ABCC11Q96J66 1382 aa25.93■■□□□ 1.74
COL7A1-208ENST00000470076 KNDC1Q76NI1 1749 aa25.92■■□□□ 1.74
COL7A1-208ENST00000470076 STK26Q9P289 416 aa25.92■■□□□ 1.74
COL7A1-208ENST00000470076 RXRBP28702 533 aa25.91■■□□□ 1.74
COL7A1-208ENST00000470076 TMEM132EQ6IEE7 984 aa25.89■■□□□ 1.74
COL7A1-208ENST00000470076 RAB3GAP2Q9H2M9 1393 aa25.88■■□□□ 1.73
COL7A1-208ENST00000470076 WAPLQ7Z5K2 1190 aa25.88■■□□□ 1.73
COL7A1-208ENST00000470076 C8orf37Q96NL8 207 aa25.88■■□□□ 1.73
COL7A1-208ENST00000470076 CDK12Q9NYV4 1490 aaPredicted RBP25.87■■□□□ 1.73
COL7A1-208ENST00000470076 ESCO1Q5FWF5 840 aa25.87■■□□□ 1.73
COL7A1-208ENST00000470076 YTHDC2Q9H6S0 1430 aaKnown RBP25.87■■□□□ 1.73
COL7A1-208ENST00000470076 NPHP3Q7Z494 1330 aa25.87■■□□□ 1.73
COL7A1-208ENST00000470076 NRXN1Q9ULB1 1477 aa25.85■■□□□ 1.73
COL7A1-208ENST00000470076 MYOM2P54296 1465 aa25.85■■□□□ 1.73
COL7A1-208ENST00000470076 C14orf93Q9H972 538 aaKnown RBP25.84■■□□□ 1.73
COL7A1-208ENST00000470076 ADAMTS2O95450 1211 aa25.83■■□□□ 1.73
COL7A1-208ENST00000470076 SIRT1Q96EB6 747 aa25.83■■□□□ 1.73
COL7A1-208ENST00000470076 COL22A1Q8NFW1 1626 aaPredicted RBP25.83■■□□□ 1.73
COL7A1-208ENST00000470076 PLEKHH1Q9ULM0 1364 aa25.82■■□□□ 1.72
COL7A1-208ENST00000470076 NGLY1Q96IV0 654 aa25.82■■□□□ 1.72
COL7A1-208ENST00000470076 PXDNQ92626 1479 aa25.81■■□□□ 1.72
COL7A1-208ENST00000470076 QTRT2Q9H974 415 aaKnown RBP25.81■■□□□ 1.72
COL7A1-208ENST00000470076 FMN2Q9NZ56 1722 aa25.8■■□□□ 1.72
COL7A1-208ENST00000470076 FOXO3O43524 673 aa25.8■■□□□ 1.72
COL7A1-208ENST00000470076 DHX57Q6P158 1386 aaKnown RBP25.8■■□□□ 1.72
COL7A1-208ENST00000470076 NUTM2FA1L443 756 aa25.79■■□□□ 1.72
COL7A1-208ENST00000470076 RBM6P78332 1123 aaKnown RBP25.79■■□□□ 1.72
COL7A1-208ENST00000470076 CFAP70Q5T0N1 1121 aa25.78■■□□□ 1.72
COL7A1-208ENST00000470076 UPF1Q92900 1129 aaKnown RBP eCLIP25.77■■□□□ 1.72
COL7A1-208ENST00000470076 KIF1AQ12756 1690 aa25.75■■□□□ 1.71
COL7A1-208ENST00000470076 XPCQ01831 940 aaPredicted RBP25.74■■□□□ 1.71
COL7A1-208ENST00000470076 FNBP4Q8N3X1 1017 aaPredicted RBP25.73■■□□□ 1.71
COL7A1-208ENST00000470076 USP21Q9UK80 565 aa25.73■■□□□ 1.71
COL7A1-208ENST00000470076 RGS12O14924 1447 aa25.72■■□□□ 1.71
COL7A1-208ENST00000470076 HRCP23327 699 aa25.72■■□□□ 1.71
COL7A1-208ENST00000470076 DLC1Q96QB1 1528 aa25.7■■□□□ 1.7
COL7A1-208ENST00000470076 TRPC5Q9UL62 973 aaPredicted RBP25.7■■□□□ 1.7
COL7A1-208ENST00000470076 MARF1Q9Y4F3 1742 aaKnown RBP25.7■■□□□ 1.7
COL7A1-208ENST00000470076 PRAM1Q96QH2 718 aa25.69■■□□□ 1.7
COL7A1-208ENST00000470076 RGPD8O14715 1765 aaPredicted RBP25.68■■□□□ 1.7
COL7A1-208ENST00000470076 SPATA31A3Q5VYP0 1347 aa25.67■■□□□ 1.7
COL7A1-208ENST00000470076 ADGRB1O14514 1584 aa25.66■■□□□ 1.7
COL7A1-208ENST00000470076 KRT28Q7Z3Y7 464 aa25.66■■□□□ 1.7
COL7A1-208ENST00000470076 STAC3Q96MF2 364 aa25.66■■□□□ 1.7
COL7A1-208ENST00000470076 POGKQ9P215 609 aa25.66■■□□□ 1.7
COL7A1-208ENST00000470076 ATRNO75882 1429 aa25.65■■□□□ 1.7
COL7A1-208ENST00000470076 SAFB2Q14151 953 aaKnown RBP eCLIP25.65■■□□□ 1.7
COL7A1-208ENST00000470076 PHF8Q9UPP1 1060 aa25.65■■□□□ 1.7
COL7A1-208ENST00000470076 DCAF11Q8TEB1 546 aa25.64■■□□□ 1.7
COL7A1-208ENST00000470076 ADGRB2O60241 1585 aa25.62■■□□□ 1.69
COL7A1-208ENST00000470076 PSME1Q06323 249 aa25.62■■□□□ 1.69
COL7A1-208ENST00000470076 KDM2AQ9Y2K7 1162 aa25.62■■□□□ 1.69
COL7A1-208ENST00000470076 ANKARQ7Z5J8 1434 aa25.62■■□□□ 1.69
COL7A1-208ENST00000470076 BCL9LQ86UU0 1499 aa25.61■■□□□ 1.69
COL7A1-208ENST00000470076 TRAK1Q9UPV9 953 aa25.6■■□□□ 1.69
COL7A1-208ENST00000470076 TNS3Q68CZ2 1445 aa25.6■■□□□ 1.69
COL7A1-208ENST00000470076 USP32Q8NFA0 1604 aa25.58■■□□□ 1.69
COL7A1-208ENST00000470076 SBNO1A3KN83 1393 aa25.57■■□□□ 1.68
COL7A1-208ENST00000470076 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.57■■□□□ 1.68
COL7A1-208ENST00000470076 ATAD2Q6PL18 1390 aa25.56■■□□□ 1.68
COL7A1-208ENST00000470076 EIF3AQ14152 1382 aaKnown RBP25.56■■□□□ 1.68
COL7A1-208ENST00000470076 SLIT2O94813 1529 aa25.54■■□□□ 1.68
COL7A1-208ENST00000470076 GJD4Q96KN9 370 aaPredicted RBP25.54■■□□□ 1.68
COL7A1-208ENST00000470076 ARHGEF10O15013 1369 aa25.54■■□□□ 1.68
COL7A1-208ENST00000470076 HAP1P54257 671 aaPredicted RBP25.53■■□□□ 1.68
COL7A1-208ENST00000470076 PMFBP1Q8TBY8 1022 aa25.53■■□□□ 1.68
COL7A1-208ENST00000470076 HIRIP3Q9BW71 556 aaPredicted RBP25.53■■□□□ 1.68
COL7A1-208ENST00000470076 MINK1Q8N4C8 1332 aaPredicted RBP25.53■■□□□ 1.68
COL7A1-208ENST00000470076 UNC5CLQ8IV45 518 aa25.52■■□□□ 1.68
COL7A1-208ENST00000470076 TULP4Q9NRJ4 1543 aa25.51■■□□□ 1.67
COL7A1-208ENST00000470076 LMOD2Q6P5Q4 547 aa25.5■■□□□ 1.67
COL7A1-208ENST00000470076 WASLO00401 505 aaPredicted RBP25.49■■□□□ 1.67
COL7A1-208ENST00000470076 CABLES1Q8TDN4 633 aa25.49■■□□□ 1.67
COL7A1-208ENST00000470076 ABCA3Q99758 1704 aa25.49■■□□□ 1.67
COL7A1-208ENST00000470076 ARHGEF28Q8N1W1 1705 aaKnown RBP25.48■■□□□ 1.67
COL7A1-208ENST00000470076 EP400Q96L91 3159 aa25.48■■□□□ 1.67
COL7A1-208ENST00000470076 GPRASP1Q5JY77 1395 aa25.47■■□□□ 1.67
COL7A1-208ENST00000470076 PRR36Q9H6K5 1346 aa25.47■■□□□ 1.67
COL7A1-208ENST00000470076 TRPM3Q9HCF6 1732 aaPredicted RBP25.46■■□□□ 1.67
COL7A1-208ENST00000470076 RALGAPBQ86X10 1494 aa25.46■■□□□ 1.67
COL7A1-208ENST00000470076 NWD2Q9ULI1 1742 aa25.46■■□□□ 1.67
COL7A1-208ENST00000470076 GLI3P10071 1580 aa25.45■■□□□ 1.66
COL7A1-208ENST00000470076 PLCH1Q4KWH8 1693 aa25.45■■□□□ 1.66
COL7A1-208ENST00000470076 PLEKHG5O94827 1062 aa25.44■■□□□ 1.66
COL7A1-208ENST00000470076 KIAA1210Q9ULL0 1709 aa25.43■■□□□ 1.66
COL7A1-208ENST00000470076 ALS2Q96Q42 1657 aa25.42■■□□□ 1.66
COL7A1-208ENST00000470076 ITSN1Q15811 1721 aa25.42■■□□□ 1.66
COL7A1-208ENST00000470076 VPS72Q15906 364 aa25.41■■□□□ 1.66
COL7A1-208ENST00000470076 CCDC125Q86Z20 511 aa25.4■■□□□ 1.66
COL7A1-208ENST00000470076 NGDNQ8NEJ9 315 aaKnown RBP25.4■■□□□ 1.66
COL7A1-208ENST00000470076 ATP7BP35670 1465 aa25.39■■□□□ 1.65
COL7A1-208ENST00000470076 FAM83GA6ND36 823 aa25.37■■□□□ 1.65
COL7A1-208ENST00000470076 NUDT16Q96DE0 195 aaKnown RBP25.37■■□□□ 1.65
COL7A1-208ENST00000470076 CCDC9Q9Y3X0 531 aaKnown RBP25.35■■□□□ 1.65
COL7A1-208ENST00000470076 BRWD3Q6RI45 1802 aa25.35■■□□□ 1.65
COL7A1-208ENST00000470076 CDK19Q9BWU1 502 aa25.34■■□□□ 1.65
COL7A1-208ENST00000470076 COL14A1Q05707 1796 aaKnown RBP25.33■■□□□ 1.65
COL7A1-208ENST00000470076 ONECUT3O60422 494 aaPredicted RBP25.33■■□□□ 1.65
COL7A1-208ENST00000470076 PAK3O75914 559 aaPredicted RBP25.33■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 119.5 ms