RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 DDX17Q92841 729 aaKnown RBP24.11■■□□□ 1.45
COL9A3-208ENST00000469802 LRRC59Q96AG4 307 aaKnown RBP24.1■■□□□ 1.45
COL9A3-208ENST00000469802 PLEKHH1Q9ULM0 1364 aa24.09■■□□□ 1.45
COL9A3-208ENST00000469802 TMEM132EQ6IEE7 984 aa24.09■■□□□ 1.45
COL9A3-208ENST00000469802 ORAI2Q96SN7 254 aa24.09■■□□□ 1.45
COL9A3-208ENST00000469802 C14orf93Q9H972 538 aaKnown RBP24.09■■□□□ 1.45
COL9A3-208ENST00000469802 SOS2Q07890 1332 aaPredicted RBP24.09■■□□□ 1.45
COL9A3-208ENST00000469802 ADGRB1O14514 1584 aa24.08■■□□□ 1.45
COL9A3-208ENST00000469802 STK26Q9P289 416 aa24.07■■□□□ 1.44
COL9A3-208ENST00000469802 KIF1AQ12756 1690 aa24.07■■□□□ 1.44
COL9A3-208ENST00000469802 DLC1Q96QB1 1528 aa24.06■■□□□ 1.44
COL9A3-208ENST00000469802 WAPLQ7Z5K2 1190 aa24.06■■□□□ 1.44
COL9A3-208ENST00000469802 PXDNQ92626 1479 aa24.06■■□□□ 1.44
COL9A3-208ENST00000469802 RGPD8O14715 1765 aaPredicted RBP24.06■■□□□ 1.44
COL9A3-208ENST00000469802 MEX3CQ5U5Q3 659 aaKnown RBP24.05■■□□□ 1.44
COL9A3-208ENST00000469802 CFAP70Q5T0N1 1121 aa24.03■■□□□ 1.44
COL9A3-208ENST00000469802 SIRT1Q96EB6 747 aa24.03■■□□□ 1.44
COL9A3-208ENST00000469802 ADGRB2O60241 1585 aa24.03■■□□□ 1.44
COL9A3-208ENST00000469802 MARF1Q9Y4F3 1742 aaKnown RBP24.02■■□□□ 1.44
COL9A3-208ENST00000469802 ZNF772Q68DY9 489 aaPredicted RBP24.02■■□□□ 1.44
COL9A3-208ENST00000469802 NUTM2BA6NNL0 878 aaPredicted RBP24.01■■□□□ 1.43
COL9A3-208ENST00000469802 NUTM2EB1AL46 878 aaPredicted RBP24.01■■□□□ 1.43
COL9A3-208ENST00000469802 NUTM2AQ8IVF1 878 aaPredicted RBP24.01■■□□□ 1.43
COL9A3-208ENST00000469802 DHX57Q6P158 1386 aaKnown RBP24.01■■□□□ 1.43
COL9A3-208ENST00000469802 NPHP3Q7Z494 1330 aa23.98■■□□□ 1.43
COL9A3-208ENST00000469802 USP32Q8NFA0 1604 aa23.98■■□□□ 1.43
COL9A3-208ENST00000469802 ESCO1Q5FWF5 840 aa23.97■■□□□ 1.43
COL9A3-208ENST00000469802 CDK12Q9NYV4 1490 aaPredicted RBP23.96■■□□□ 1.43
COL9A3-208ENST00000469802 ARHGEF28Q8N1W1 1705 aaKnown RBP23.96■■□□□ 1.43
COL9A3-208ENST00000469802 AFF2P51816 1311 aa23.95■■□□□ 1.42
COL9A3-208ENST00000469802 KIAA1210Q9ULL0 1709 aa23.93■■□□□ 1.42
COL9A3-208ENST00000469802 STAC3Q96MF2 364 aa23.92■■□□□ 1.42
COL9A3-208ENST00000469802 NUTM2FA1L443 756 aa23.91■■□□□ 1.42
COL9A3-208ENST00000469802 PRAM1Q96QH2 718 aa23.91■■□□□ 1.42
COL9A3-208ENST00000469802 FOXO3O43524 673 aa23.9■■□□□ 1.42
COL9A3-208ENST00000469802 DCAF11Q8TEB1 546 aa23.9■■□□□ 1.42
COL9A3-208ENST00000469802 C8orf37Q96NL8 207 aa23.9■■□□□ 1.42
COL9A3-208ENST00000469802 ANKARQ7Z5J8 1434 aa23.89■■□□□ 1.41
COL9A3-208ENST00000469802 ABCA3Q99758 1704 aa23.89■■□□□ 1.41
COL9A3-208ENST00000469802 XPCQ01831 940 aaPredicted RBP23.87■■□□□ 1.41
COL9A3-208ENST00000469802 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.87■■□□□ 1.41
COL9A3-208ENST00000469802 ADAMTS2O95450 1211 aa23.86■■□□□ 1.41
COL9A3-208ENST00000469802 RXRBP28702 533 aa23.86■■□□□ 1.41
COL9A3-208ENST00000469802 KDM2AQ9Y2K7 1162 aa23.86■■□□□ 1.41
COL9A3-208ENST00000469802 TRPM3Q9HCF6 1732 aaPredicted RBP23.85■■□□□ 1.41
COL9A3-208ENST00000469802 RGS12O14924 1447 aa23.84■■□□□ 1.41
COL9A3-208ENST00000469802 TULP4Q9NRJ4 1543 aa23.84■■□□□ 1.41
COL9A3-208ENST00000469802 SAFB2Q14151 953 aaKnown RBP eCLIP23.84■■□□□ 1.41
COL9A3-208ENST00000469802 POGKQ9P215 609 aa23.83■■□□□ 1.41
COL9A3-208ENST00000469802 ITSN1Q15811 1721 aa23.83■■□□□ 1.41
COL9A3-208ENST00000469802 SPATA31A3Q5VYP0 1347 aa23.83■■□□□ 1.4
COL9A3-208ENST00000469802 NGLY1Q96IV0 654 aa23.82■■□□□ 1.4
COL9A3-208ENST00000469802 TRAK1Q9UPV9 953 aa23.82■■□□□ 1.4
COL9A3-208ENST00000469802 TNS3Q68CZ2 1445 aa23.82■■□□□ 1.4
COL9A3-208ENST00000469802 FNBP4Q8N3X1 1017 aaPredicted RBP23.81■■□□□ 1.4
COL9A3-208ENST00000469802 PHF8Q9UPP1 1060 aa23.81■■□□□ 1.4
COL9A3-208ENST00000469802 ALS2Q96Q42 1657 aa23.8■■□□□ 1.4
COL9A3-208ENST00000469802 ATRNO75882 1429 aa23.8■■□□□ 1.4
COL9A3-208ENST00000469802 RBM6P78332 1123 aaKnown RBP23.79■■□□□ 1.4
COL9A3-208ENST00000469802 QTRT2Q9H974 415 aaKnown RBP23.79■■□□□ 1.4
COL9A3-208ENST00000469802 SBNO1A3KN83 1393 aa23.78■■□□□ 1.4
COL9A3-208ENST00000469802 EIF3AQ14152 1382 aaKnown RBP23.78■■□□□ 1.4
COL9A3-208ENST00000469802 BCL9LQ86UU0 1499 aa23.78■■□□□ 1.4
COL9A3-208ENST00000469802 TOPAZ1Q8N9V7 1692 aa23.77■■□□□ 1.4
COL9A3-208ENST00000469802 KRT28Q7Z3Y7 464 aa23.77■■□□□ 1.4
COL9A3-208ENST00000469802 PLCH1Q4KWH8 1693 aa23.76■■□□□ 1.39
COL9A3-208ENST00000469802 CRYBG1Q9Y4K1 1723 aa23.76■■□□□ 1.39
COL9A3-208ENST00000469802 USP21Q9UK80 565 aa23.76■■□□□ 1.39
COL9A3-208ENST00000469802 PRR36Q9H6K5 1346 aa23.76■■□□□ 1.39
COL9A3-208ENST00000469802 ATP7BP35670 1465 aa23.75■■□□□ 1.39
COL9A3-208ENST00000469802 HIRIP3Q9BW71 556 aaPredicted RBP23.75■■□□□ 1.39
COL9A3-208ENST00000469802 MINK1Q8N4C8 1332 aaPredicted RBP23.75■■□□□ 1.39
COL9A3-208ENST00000469802 NWD2Q9ULI1 1742 aa23.75■■□□□ 1.39
COL9A3-208ENST00000469802 SLIT2O94813 1529 aa23.74■■□□□ 1.39
COL9A3-208ENST00000469802 TRPC5Q9UL62 973 aaPredicted RBP23.73■■□□□ 1.39
COL9A3-208ENST00000469802 WASLO00401 505 aaPredicted RBP23.72■■□□□ 1.39
COL9A3-208ENST00000469802 UPF1Q92900 1129 aaKnown RBP eCLIP23.72■■□□□ 1.39
COL9A3-208ENST00000469802 ARHGEF10O15013 1369 aa23.72■■□□□ 1.39
COL9A3-208ENST00000469802 PSME1Q06323 249 aa23.71■■□□□ 1.39
COL9A3-208ENST00000469802 GLI3P10071 1580 aa23.69■■□□□ 1.38
COL9A3-208ENST00000469802 PMFBP1Q8TBY8 1022 aa23.69■■□□□ 1.38
COL9A3-208ENST00000469802 TRPM1Q7Z4N2 1603 aa23.69■■□□□ 1.38
COL9A3-208ENST00000469802 NRAPQ86VF7 1730 aa23.67■■□□□ 1.38
COL9A3-208ENST00000469802 QRICH2Q9H0J4 1663 aa23.67■■□□□ 1.38
COL9A3-208ENST00000469802 NBPF1Q3BBV0 1214 aa23.64■■□□□ 1.37
COL9A3-208ENST00000469802 GPRASP1Q5JY77 1395 aa23.64■■□□□ 1.37
COL9A3-208ENST00000469802 CABLES1Q8TDN4 633 aa23.63■■□□□ 1.37
COL9A3-208ENST00000469802 COL14A1Q05707 1796 aaKnown RBP23.63■■□□□ 1.37
COL9A3-208ENST00000469802 PHRF1Q9P1Y6 1649 aaKnown RBP23.62■■□□□ 1.37
COL9A3-208ENST00000469802 RALGAPBQ86X10 1494 aa23.62■■□□□ 1.37
COL9A3-208ENST00000469802 BRWD3Q6RI45 1802 aa23.62■■□□□ 1.37
COL9A3-208ENST00000469802 UNC5CLQ8IV45 518 aa23.61■■□□□ 1.37
COL9A3-208ENST00000469802 NUDT16Q96DE0 195 aaKnown RBP23.6■■□□□ 1.37
COL9A3-208ENST00000469802 GJD4Q96KN9 370 aaPredicted RBP23.6■■□□□ 1.37
COL9A3-208ENST00000469802 EP400Q96L91 3159 aa23.59■■□□□ 1.37
COL9A3-208ENST00000469802 L3MBTL2Q969R5 705 aa23.59■■□□□ 1.37
COL9A3-208ENST00000469802 POLR3AO14802 1390 aaPredicted RBP23.59■■□□□ 1.37
COL9A3-208ENST00000469802 ATAD2Q6PL18 1390 aa23.59■■□□□ 1.37
COL9A3-208ENST00000469802 LMOD2Q6P5Q4 547 aa23.58■■□□□ 1.37
COL9A3-208ENST00000469802 HAP1P54257 671 aaPredicted RBP23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms