RNA–Protein interactions for RNA: ENST00000469670.1

TTC28-205, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-205ENST00000469670 KIF1BO60333 1816 aa27.74■■■□□ 2.03
TTC28-205ENST00000469670 NPHP3Q7Z494 1330 aa27.74■■■□□ 2.03
TTC28-205ENST00000469670 ESCO1Q5FWF5 840 aa27.73■■■□□ 2.03
TTC28-205ENST00000469670 RPGRIP1LQ68CZ1 1315 aa27.72■■■□□ 2.03
TTC28-205ENST00000469670 BCL9LQ86UU0 1499 aa27.72■■■□□ 2.03
TTC28-205ENST00000469670 PPARGC1BQ86YN6 1023 aaKnown RBP27.72■■■□□ 2.03
TTC28-205ENST00000469670 CCDC125Q86Z20 511 aa27.72■■■□□ 2.03
TTC28-205ENST00000469670 PXDNQ92626 1479 aa27.69■■■□□ 2.02
TTC28-205ENST00000469670 GJD4Q96KN9 370 aaPredicted RBP27.68■■■□□ 2.02
TTC28-205ENST00000469670 FOXO3O43524 673 aa27.67■■■□□ 2.02
TTC28-205ENST00000469670 XPCQ01831 940 aaPredicted RBP27.67■■■□□ 2.02
TTC28-205ENST00000469670 NAIPQ13075 1403 aa27.66■■■□□ 2.02
TTC28-205ENST00000469670 CDC42BPGQ6DT37 1551 aa27.65■■■□□ 2.02
TTC28-205ENST00000469670 EP400Q96L91 3159 aa27.64■■■□□ 2.01
TTC28-205ENST00000469670 LRPPRCP42704 1394 aaKnown RBP27.62■■■□□ 2.01
TTC28-205ENST00000469670 NUTM2FA1L443 756 aa27.59■■■□□ 2.01
TTC28-205ENST00000469670 UNC5CLQ8IV45 518 aa27.59■■■□□ 2.01
TTC28-205ENST00000469670 MARF1Q9Y4F3 1742 aaKnown RBP27.58■■■□□ 2.01
TTC28-205ENST00000469670 PPLO60437 1756 aa27.58■■■□□ 2
TTC28-205ENST00000469670 WAPLQ7Z5K2 1190 aa27.57■■■□□ 2
TTC28-205ENST00000469670 SLC4A1APQ9BWU0 796 aaKnown RBP27.57■■■□□ 2
TTC28-205ENST00000469670 STK26Q9P289 416 aa27.56■■■□□ 2
TTC28-205ENST00000469670 BLMP54132 1417 aaPredicted RBP27.56■■■□□ 2
TTC28-205ENST00000469670 RALGAPBQ86X10 1494 aa27.56■■■□□ 2
TTC28-205ENST00000469670 ADGRF5Q8IZF2 1346 aa27.55■■■□□ 2
TTC28-205ENST00000469670 SLIT2O94813 1529 aa27.55■■■□□ 2
TTC28-205ENST00000469670 RRBP1Q9P2E9 1410 aaKnown RBP27.54■■■□□ 2
TTC28-205ENST00000469670 TECPR2O15040 1411 aa27.53■■■□□ 2
TTC28-205ENST00000469670 SPATA31A3Q5VYP0 1347 aa27.53■■■□□ 2
TTC28-205ENST00000469670 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.53■■■□□ 2
TTC28-205ENST00000469670 GLI3P10071 1580 aa27.52■■■□□ 2
TTC28-205ENST00000469670 DEFB132Q7Z7B7 95 aa27.5■■□□□ 1.99
TTC28-205ENST00000469670 PLEKHH1Q9ULM0 1364 aa27.49■■□□□ 1.99
TTC28-205ENST00000469670 CCDC144AA2RUR9 1427 aa27.49■■□□□ 1.99
TTC28-205ENST00000469670 ABCC11Q96J66 1382 aa27.48■■□□□ 1.99
TTC28-205ENST00000469670 KRT28Q7Z3Y7 464 aa27.48■■□□□ 1.99
TTC28-205ENST00000469670 SF3B2Q13435 895 aaKnown RBP27.47■■□□□ 1.99
TTC28-205ENST00000469670 TMEM132EQ6IEE7 984 aa27.47■■□□□ 1.99
TTC28-205ENST00000469670 RGL3Q3MIN7 710 aa27.46■■□□□ 1.99
TTC28-205ENST00000469670 SEPT12Q8IYM1 358 aa27.46■■□□□ 1.99
TTC28-205ENST00000469670 USP32Q8NFA0 1604 aa27.45■■□□□ 1.98
TTC28-205ENST00000469670 HAP1P54257 671 aaPredicted RBP27.44■■□□□ 1.98
TTC28-205ENST00000469670 VPS72Q15906 364 aa27.43■■□□□ 1.98
TTC28-205ENST00000469670 ANKRD30BQ9BXX2 1392 aa27.43■■□□□ 1.98
TTC28-205ENST00000469670 KIF1AQ12756 1690 aa27.43■■□□□ 1.98
TTC28-205ENST00000469670 FMN2Q9NZ56 1722 aa27.42■■□□□ 1.98
TTC28-205ENST00000469670 TNS3Q68CZ2 1445 aa27.41■■□□□ 1.98
TTC28-205ENST00000469670 SPATA31E1Q6ZUB1 1445 aa27.41■■□□□ 1.98
TTC28-205ENST00000469670 CABLES1Q8TDN4 633 aa27.4■■□□□ 1.98
TTC28-205ENST00000469670 KNDC1Q76NI1 1749 aa27.39■■□□□ 1.98
TTC28-205ENST00000469670 ONECUT3O60422 494 aaPredicted RBP27.39■■□□□ 1.98
TTC28-205ENST00000469670 PSME1Q06323 249 aa27.39■■□□□ 1.98
TTC28-205ENST00000469670 PHF8Q9UPP1 1060 aa27.39■■□□□ 1.98
TTC28-205ENST00000469670 CCDC9Q9Y3X0 531 aaKnown RBP27.39■■□□□ 1.98
TTC28-205ENST00000469670 YTHDC2Q9H6S0 1430 aaKnown RBP27.39■■□□□ 1.97
TTC28-205ENST00000469670 BRWD3Q6RI45 1802 aa27.39■■□□□ 1.97
TTC28-205ENST00000469670 PLEKHG5O94827 1062 aa27.38■■□□□ 1.97
TTC28-205ENST00000469670 PIK3C2GO75747 1445 aa27.38■■□□□ 1.97
TTC28-205ENST00000469670 KRT27Q7Z3Y8 459 aa27.37■■□□□ 1.97
TTC28-205ENST00000469670 SIRT1Q96EB6 747 aa27.36■■□□□ 1.97
TTC28-205ENST00000469670 LMOD2Q6P5Q4 547 aa27.34■■□□□ 1.97
TTC28-205ENST00000469670 SBNO1A3KN83 1393 aa27.34■■□□□ 1.97
TTC28-205ENST00000469670 IFT172Q9UG01 1749 aa27.33■■□□□ 1.96
TTC28-205ENST00000469670 LRP5O75197 1615 aa27.31■■□□□ 1.96
TTC28-205ENST00000469670 ARHGEF10O15013 1369 aa27.31■■□□□ 1.96
TTC28-205ENST00000469670 NRXN1Q9ULB1 1477 aa27.31■■□□□ 1.96
TTC28-205ENST00000469670 PLCH1Q4KWH8 1693 aa27.3■■□□□ 1.96
TTC28-205ENST00000469670 NWD2Q9ULI1 1742 aa27.3■■□□□ 1.96
TTC28-205ENST00000469670 FAM83GA6ND36 823 aa27.3■■□□□ 1.96
TTC28-205ENST00000469670 A0A0G2JS52 829 aa27.29■■□□□ 1.96
TTC28-205ENST00000469670 BAG6P46379 1132 aa27.29■■□□□ 1.96
TTC28-205ENST00000469670 MYT1Q01538 1121 aa27.29■■□□□ 1.96
TTC28-205ENST00000469670 PSDA5PKW4 1024 aaPredicted RBP27.28■■□□□ 1.96
TTC28-205ENST00000469670 C14orf93Q9H972 538 aaKnown RBP27.28■■□□□ 1.96
TTC28-205ENST00000469670 MPHOSPH9Q99550 1183 aa27.27■■□□□ 1.96
TTC28-205ENST00000469670 DHX57Q6P158 1386 aaKnown RBP27.25■■□□□ 1.95
TTC28-205ENST00000469670 SAFB2Q14151 953 aaKnown RBP eCLIP27.25■■□□□ 1.95
TTC28-205ENST00000469670 FAM98CQ17RN3 349 aaKnown RBP27.25■■□□□ 1.95
TTC28-205ENST00000469670 RGPD8O14715 1765 aaPredicted RBP27.25■■□□□ 1.95
TTC28-205ENST00000469670 ABCA3Q99758 1704 aa27.24■■□□□ 1.95
TTC28-205ENST00000469670 HRCP23327 699 aa27.24■■□□□ 1.95
TTC28-205ENST00000469670 CFAP70Q5T0N1 1121 aa27.24■■□□□ 1.95
TTC28-205ENST00000469670 PMFBP1Q8TBY8 1022 aa27.24■■□□□ 1.95
TTC28-205ENST00000469670 PRAM1Q96QH2 718 aa27.24■■□□□ 1.95
TTC28-205ENST00000469670 BTG4Q9NY30 223 aa27.22■■□□□ 1.95
TTC28-205ENST00000469670 ANKARQ7Z5J8 1434 aa27.2■■□□□ 1.94
TTC28-205ENST00000469670 EN1Q05925 392 aaPredicted RBP27.18■■□□□ 1.94
TTC28-205ENST00000469670 POGKQ9P215 609 aa27.18■■□□□ 1.94
TTC28-205ENST00000469670 NRAPQ86VF7 1730 aa27.17■■□□□ 1.94
TTC28-205ENST00000469670 FAM182BQ5T319 152 aa27.15■■□□□ 1.94
TTC28-205ENST00000469670 GPRASP1Q5JY77 1395 aa27.13■■□□□ 1.93
TTC28-205ENST00000469670 DLC1Q96QB1 1528 aa27.13■■□□□ 1.93
TTC28-205ENST00000469670 SPATA31A5Q5VU36 1347 aa27.13■■□□□ 1.93
TTC28-205ENST00000469670 SPATA31A7Q8IWB4 1347 aa27.13■■□□□ 1.93
TTC28-205ENST00000469670 R3HDM1Q15032 1099 aaKnown RBP27.12■■□□□ 1.93
TTC28-205ENST00000469670 COL14A1Q05707 1796 aaKnown RBP27.12■■□□□ 1.93
TTC28-205ENST00000469670 ACIN1Q9UKV3 1341 aaKnown RBP27.11■■□□□ 1.93
TTC28-205ENST00000469670 TRPM3Q9HCF6 1732 aaPredicted RBP27.1■■□□□ 1.93
TTC28-205ENST00000469670 ADGRB2O60241 1585 aa27.1■■□□□ 1.93
TTC28-205ENST00000469670 HIRIP3Q9BW71 556 aaPredicted RBP27.1■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms