RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 ATAD2BQ9ULI0 1458 aa11.07□□□□□ -0.64
PTCD3-208ENST00000469585 LILRB3O75022 631 aa11.07□□□□□ -0.64
PTCD3-208ENST00000469585 ATP1B4Q9UN42 357 aaPredicted RBP11.07□□□□□ -0.64
PTCD3-208ENST00000469585 HMGXB3Q12766 1538 aa11.06□□□□□ -0.64
PTCD3-208ENST00000469585 QPCTQ16769 361 aa11.06□□□□□ -0.64
PTCD3-208ENST00000469585 MORN1Q5T089 497 aa11.06□□□□□ -0.64
PTCD3-208ENST00000469585 PCDH10Q9P2E7 1040 aa11.06□□□□□ -0.64
PTCD3-208ENST00000469585 TIMELESSQ9UNS1 1208 aa11.06□□□□□ -0.64
PTCD3-208ENST00000469585 CSPP1Q1MSJ5 1256 aa11.05□□□□□ -0.64
PTCD3-208ENST00000469585 PRPF38BQ5VTL8 546 aaKnown RBP11.05□□□□□ -0.64
PTCD3-208ENST00000469585 RFC5P40937 340 aa11.04□□□□□ -0.64
PTCD3-208ENST00000469585 PUS10Q3MIT2 529 aaKnown RBP11.04□□□□□ -0.64
PTCD3-208ENST00000469585 MROH2BQ7Z745 1585 aa11.03□□□□□ -0.64
PTCD3-208ENST00000469585 HRCP23327 699 aa11.03□□□□□ -0.64
PTCD3-208ENST00000469585 CABLES1Q8TDN4 633 aa11.03□□□□□ -0.64
PTCD3-208ENST00000469585 RTL5Q5HYW3 569 aaPredicted RBP11.02□□□□□ -0.65
PTCD3-208ENST00000469585 ZBTB3Q9H5J0 574 aa11.02□□□□□ -0.65
PTCD3-208ENST00000469585 MYT1LQ9UL68 1186 aa11.02□□□□□ -0.65
PTCD3-208ENST00000469585 SLC27A5Q9Y2P5 690 aa11.02□□□□□ -0.65
PTCD3-208ENST00000469585 PEG3Q9GZU2 1588 aa11.02□□□□□ -0.65
PTCD3-208ENST00000469585 ERICH6Q7L0X2 663 aa11.01□□□□□ -0.65
PTCD3-208ENST00000469585 PCDHB3Q9Y5E6 796 aa11□□□□□ -0.65
PTCD3-208ENST00000469585 MTMR2Q13614 643 aa10.99□□□□□ -0.65
PTCD3-208ENST00000469585 NYAP1Q6ZVC0 841 aa10.99□□□□□ -0.65
PTCD3-208ENST00000469585 NUTM2BA6NNL0 878 aaPredicted RBP10.98□□□□□ -0.65
PTCD3-208ENST00000469585 NUTM2EB1AL46 878 aaPredicted RBP10.98□□□□□ -0.65
PTCD3-208ENST00000469585 TMEM259Q4ZIN3 620 aa10.98□□□□□ -0.65
PTCD3-208ENST00000469585 NUTM2DQ5VT03 806 aaPredicted RBP10.98□□□□□ -0.65
PTCD3-208ENST00000469585 C14orf37Q86TY3 774 aa10.98□□□□□ -0.65
PTCD3-208ENST00000469585 NUTM2AQ8IVF1 878 aaPredicted RBP10.98□□□□□ -0.65
PTCD3-208ENST00000469585 PTPN5P54829 565 aa10.97□□□□□ -0.65
PTCD3-208ENST00000469585 FLIIQ13045 1269 aa10.97□□□□□ -0.65
PTCD3-208ENST00000469585 BLOC1S3Q6QNY0 202 aa10.97□□□□□ -0.65
PTCD3-208ENST00000469585 SPNS2Q8IVW8 549 aa10.97□□□□□ -0.65
PTCD3-208ENST00000469585 SCUBE3Q8IX30 993 aa10.97□□□□□ -0.65
PTCD3-208ENST00000469585 BANK1Q8NDB2 785 aa10.97□□□□□ -0.65
PTCD3-208ENST00000469585 SYMPKQ92797 1274 aaKnown RBP10.97□□□□□ -0.65
PTCD3-208ENST00000469585 SPDYE5A6NIY4 337 aa10.96□□□□□ -0.65
PTCD3-208ENST00000469585 C6orf229H3BNL8 230 aa10.96□□□□□ -0.65
PTCD3-208ENST00000469585 Q3C1V9 767 aa10.96□□□□□ -0.65
PTCD3-208ENST00000469585 SALL2Q9Y467 1007 aaPredicted RBP10.96□□□□□ -0.65
PTCD3-208ENST00000469585 MCM6Q14566 821 aa10.95□□□□□ -0.66
PTCD3-208ENST00000469585 RNF19BQ6ZMZ0 732 aa10.95□□□□□ -0.66
PTCD3-208ENST00000469585 THAP11Q96EK4 314 aa10.95□□□□□ -0.66
PTCD3-208ENST00000469585 RSF1Q96T23 1441 aaPredicted RBP10.94□□□□□ -0.66
PTCD3-208ENST00000469585 CFAP99D6REC4 459 aa10.94□□□□□ -0.66
PTCD3-208ENST00000469585 NR1I2O75469 434 aa10.94□□□□□ -0.66
PTCD3-208ENST00000469585 BRICD5Q6PL45 260 aa10.94□□□□□ -0.66
PTCD3-208ENST00000469585 WIZO95785 1651 aa10.94□□□□□ -0.66
PTCD3-208ENST00000469585 RETREG3Q86VR2 466 aa10.93□□□□□ -0.66
PTCD3-208ENST00000469585 SNRKQ9NRH2 765 aa10.92□□□□□ -0.66
PTCD3-208ENST00000469585 AP1G2O75843 785 aa10.91□□□□□ -0.66
PTCD3-208ENST00000469585 COPS2P61201 443 aa10.91□□□□□ -0.66
PTCD3-208ENST00000469585 PRR7Q8TB68 274 aa10.91□□□□□ -0.66
PTCD3-208ENST00000469585 RNF166Q96A37 237 aaPredicted RBP10.91□□□□□ -0.66
PTCD3-208ENST00000469585 ERCC6Q03468 1493 aa10.9□□□□□ -0.66
PTCD3-208ENST00000469585 MTRQ99707 1265 aa10.9□□□□□ -0.66
PTCD3-208ENST00000469585 FMNL1O95466 1100 aaPredicted RBP10.89□□□□□ -0.67
PTCD3-208ENST00000469585 TJAP1Q5JTD0 557 aa10.89□□□□□ -0.67
PTCD3-208ENST00000469585 USB1Q9BQ65 265 aaKnown RBP10.89□□□□□ -0.67
PTCD3-208ENST00000469585 TOP2AP11388 1531 aaKnown RBP10.89□□□□□ -0.67
PTCD3-208ENST00000469585 SOCS7O14512 581 aa10.88□□□□□ -0.67
PTCD3-208ENST00000469585 USP17L8P0C7I0 530 aa10.88□□□□□ -0.67
PTCD3-208ENST00000469585 CTDSPL2Q05D32 466 aa10.88□□□□□ -0.67
PTCD3-208ENST00000469585 MTMR14Q8NCE2 650 aa10.88□□□□□ -0.67
PTCD3-208ENST00000469585 HELBQ8NG08 1087 aaPredicted RBP10.88□□□□□ -0.67
PTCD3-208ENST00000469585 ZPR1O75312 459 aa10.87□□□□□ -0.67
PTCD3-208ENST00000469585 DESI1Q6ICB0 168 aa10.87□□□□□ -0.67
PTCD3-208ENST00000469585 IL21Q9HBE4 155 aa10.86□□□□□ -0.67
PTCD3-208ENST00000469585 HCSTQ9UBK5 93 aa10.86□□□□□ -0.67
PTCD3-208ENST00000469585 FAM160A2Q8N612 972 aaPredicted RBP10.85□□□□□ -0.67
PTCD3-208ENST00000469585 TSC1Q92574 1164 aa10.85□□□□□ -0.67
PTCD3-208ENST00000469585 ZNF516Q92618 1163 aa10.85□□□□□ -0.67
PTCD3-208ENST00000469585 SPSB2Q99619 263 aa10.85□□□□□ -0.67
PTCD3-208ENST00000469585 ZMYND15Q9H091 742 aa10.85□□□□□ -0.67
PTCD3-208ENST00000469585 SUPT5HO00267 1087 aaKnown RBP10.84□□□□□ -0.67
PTCD3-208ENST00000469585 TLL1O43897 1013 aa10.84□□□□□ -0.67
PTCD3-208ENST00000469585 MSS51Q4VC12 460 aa10.84□□□□□ -0.67
PTCD3-208ENST00000469585 LAMC3Q9Y6N6 1575 aa10.84□□□□□ -0.67
PTCD3-208ENST00000469585 PER1O15534 1290 aaPredicted RBP10.83□□□□□ -0.68
PTCD3-208ENST00000469585 UBTFP17480 764 aaKnown RBP10.83□□□□□ -0.68
PTCD3-208ENST00000469585 LRRN4Q8WUT4 740 aa10.83□□□□□ -0.68
PTCD3-208ENST00000469585 PDS5BQ9NTI5 1447 aa10.83□□□□□ -0.68
PTCD3-208ENST00000469585 ADH1BP00325 375 aa10.82□□□□□ -0.68
PTCD3-208ENST00000469585 LYPD8Q6UX82 237 aa10.82□□□□□ -0.68
PTCD3-208ENST00000469585 CLUAP1Q96AJ1 413 aa10.82□□□□□ -0.68
PTCD3-208ENST00000469585 HMX1Q9NP08 348 aaPredicted RBP10.82□□□□□ -0.68
PTCD3-208ENST00000469585 JUNDP17535 347 aa10.81□□□□□ -0.68
PTCD3-208ENST00000469585 MMRN1Q13201 1228 aa10.81□□□□□ -0.68
PTCD3-208ENST00000469585 GJD4Q96KN9 370 aaPredicted RBP10.81□□□□□ -0.68
PTCD3-208ENST00000469585 A6NJR5 290 aa10.8□□□□□ -0.68
PTCD3-208ENST00000469585 POM121Q96HA1 1249 aa10.8□□□□□ -0.68
PTCD3-208ENST00000469585 COG6Q9Y2V7 657 aa10.8□□□□□ -0.68
PTCD3-208ENST00000469585 CADPSQ9ULU8 1353 aa10.79□□□□□ -0.68
PTCD3-208ENST00000469585 DXOO77932 396 aaKnown RBP10.79□□□□□ -0.68
PTCD3-208ENST00000469585 MMP16P51512 607 aa10.79□□□□□ -0.68
PTCD3-208ENST00000469585 TRIM34Q9BYJ4 488 aa10.79□□□□□ -0.68
PTCD3-208ENST00000469585 PRDM9Q9NQV7 894 aa10.79□□□□□ -0.68
PTCD3-208ENST00000469585 ITGBL1O95965 494 aaPredicted RBP10.78□□□□□ -0.68
PTCD3-208ENST00000469585 APBB1O00213 710 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms