RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 ORAI2Q96SN7 254 aa24.52■■□□□ 1.52
CCDC28B-204ENST00000469003 PNPLA6Q8IY17 1366 aa24.52■■□□□ 1.52
CCDC28B-204ENST00000469003 ABCC11Q96J66 1382 aa24.52■■□□□ 1.52
CCDC28B-204ENST00000469003 STK26Q9P289 416 aa24.51■■□□□ 1.51
CCDC28B-204ENST00000469003 TMEM132EQ6IEE7 984 aa24.5■■□□□ 1.51
CCDC28B-204ENST00000469003 SOS2Q07890 1332 aaPredicted RBP24.49■■□□□ 1.51
CCDC28B-204ENST00000469003 MYOM2P54296 1465 aa24.49■■□□□ 1.51
CCDC28B-204ENST00000469003 NRXN1Q9ULB1 1477 aa24.49■■□□□ 1.51
CCDC28B-204ENST00000469003 YTHDC2Q9H6S0 1430 aaKnown RBP24.48■■□□□ 1.51
CCDC28B-204ENST00000469003 WAPLQ7Z5K2 1190 aa24.47■■□□□ 1.51
CCDC28B-204ENST00000469003 RXRBP28702 533 aa24.46■■□□□ 1.51
CCDC28B-204ENST00000469003 C14orf93Q9H972 538 aaKnown RBP24.46■■□□□ 1.51
CCDC28B-204ENST00000469003 PLEKHH1Q9ULM0 1364 aa24.44■■□□□ 1.5
CCDC28B-204ENST00000469003 AFF2P51816 1311 aa24.43■■□□□ 1.5
CCDC28B-204ENST00000469003 ESCO1Q5FWF5 840 aa24.43■■□□□ 1.5
CCDC28B-204ENST00000469003 SIRT1Q96EB6 747 aa24.43■■□□□ 1.5
CCDC28B-204ENST00000469003 HRCP23327 699 aa24.42■■□□□ 1.5
CCDC28B-204ENST00000469003 NPHP3Q7Z494 1330 aa24.41■■□□□ 1.5
CCDC28B-204ENST00000469003 CFAP70Q5T0N1 1121 aa24.41■■□□□ 1.5
CCDC28B-204ENST00000469003 FMN2Q9NZ56 1722 aa24.41■■□□□ 1.5
CCDC28B-204ENST00000469003 DHX57Q6P158 1386 aaKnown RBP24.41■■□□□ 1.5
CCDC28B-204ENST00000469003 COL22A1Q8NFW1 1626 aaPredicted RBP24.39■■□□□ 1.5
CCDC28B-204ENST00000469003 C8orf37Q96NL8 207 aa24.39■■□□□ 1.49
CCDC28B-204ENST00000469003 PXDNQ92626 1479 aa24.38■■□□□ 1.49
CCDC28B-204ENST00000469003 CDK12Q9NYV4 1490 aaPredicted RBP24.38■■□□□ 1.49
CCDC28B-204ENST00000469003 NUTM2FA1L443 756 aa24.36■■□□□ 1.49
CCDC28B-204ENST00000469003 FOXO3O43524 673 aa24.35■■□□□ 1.49
CCDC28B-204ENST00000469003 ADAMTS2O95450 1211 aa24.35■■□□□ 1.49
CCDC28B-204ENST00000469003 KIF1AQ12756 1690 aa24.34■■□□□ 1.49
CCDC28B-204ENST00000469003 NGLY1Q96IV0 654 aa24.33■■□□□ 1.49
CCDC28B-204ENST00000469003 DLC1Q96QB1 1528 aa24.33■■□□□ 1.49
CCDC28B-204ENST00000469003 ADGRB1O14514 1584 aa24.31■■□□□ 1.48
CCDC28B-204ENST00000469003 XPCQ01831 940 aaPredicted RBP24.31■■□□□ 1.48
CCDC28B-204ENST00000469003 QTRT2Q9H974 415 aaKnown RBP24.31■■□□□ 1.48
CCDC28B-204ENST00000469003 STAC3Q96MF2 364 aa24.3■■□□□ 1.48
CCDC28B-204ENST00000469003 PRAM1Q96QH2 718 aa24.3■■□□□ 1.48
CCDC28B-204ENST00000469003 SRCAPQ6ZRS2 3230 aa24.3■■□□□ 1.48
CCDC28B-204ENST00000469003 RGPD8O14715 1765 aaPredicted RBP24.29■■□□□ 1.48
CCDC28B-204ENST00000469003 DCAF11Q8TEB1 546 aa24.29■■□□□ 1.48
CCDC28B-204ENST00000469003 RBM6P78332 1123 aaKnown RBP24.28■■□□□ 1.48
CCDC28B-204ENST00000469003 KDM2AQ9Y2K7 1162 aa24.28■■□□□ 1.48
CCDC28B-204ENST00000469003 SAFB2Q14151 953 aaKnown RBP eCLIP24.27■■□□□ 1.48
CCDC28B-204ENST00000469003 POGKQ9P215 609 aa24.27■■□□□ 1.48
CCDC28B-204ENST00000469003 MARF1Q9Y4F3 1742 aaKnown RBP24.26■■□□□ 1.47
CCDC28B-204ENST00000469003 ADGRB2O60241 1585 aa24.25■■□□□ 1.47
CCDC28B-204ENST00000469003 FNBP4Q8N3X1 1017 aaPredicted RBP24.25■■□□□ 1.47
CCDC28B-204ENST00000469003 USP21Q9UK80 565 aa24.25■■□□□ 1.47
CCDC28B-204ENST00000469003 RGS12O14924 1447 aa24.25■■□□□ 1.47
CCDC28B-204ENST00000469003 PHF8Q9UPP1 1060 aa24.24■■□□□ 1.47
CCDC28B-204ENST00000469003 SPATA31A3Q5VYP0 1347 aa24.24■■□□□ 1.47
CCDC28B-204ENST00000469003 KRT28Q7Z3Y7 464 aa24.23■■□□□ 1.47
CCDC28B-204ENST00000469003 TRAK1Q9UPV9 953 aa24.23■■□□□ 1.47
CCDC28B-204ENST00000469003 ANKARQ7Z5J8 1434 aa24.21■■□□□ 1.47
CCDC28B-204ENST00000469003 TRPC5Q9UL62 973 aaPredicted RBP24.21■■□□□ 1.47
CCDC28B-204ENST00000469003 USP32Q8NFA0 1604 aa24.21■■□□□ 1.47
CCDC28B-204ENST00000469003 ATRNO75882 1429 aa24.19■■□□□ 1.46
CCDC28B-204ENST00000469003 PSME1Q06323 249 aa24.19■■□□□ 1.46
CCDC28B-204ENST00000469003 TNS3Q68CZ2 1445 aa24.18■■□□□ 1.46
CCDC28B-204ENST00000469003 BCL9LQ86UU0 1499 aa24.17■■□□□ 1.46
CCDC28B-204ENST00000469003 SBNO1A3KN83 1393 aa24.16■■□□□ 1.46
CCDC28B-204ENST00000469003 EIF3AQ14152 1382 aaKnown RBP24.16■■□□□ 1.46
CCDC28B-204ENST00000469003 MINK1Q8N4C8 1332 aaPredicted RBP24.15■■□□□ 1.46
CCDC28B-204ENST00000469003 HIRIP3Q9BW71 556 aaPredicted RBP24.15■■□□□ 1.46
CCDC28B-204ENST00000469003 ARHGEF28Q8N1W1 1705 aaKnown RBP24.15■■□□□ 1.46
CCDC28B-204ENST00000469003 TULP4Q9NRJ4 1543 aa24.14■■□□□ 1.45
CCDC28B-204ENST00000469003 ATAD2Q6PL18 1390 aa24.14■■□□□ 1.45
CCDC28B-204ENST00000469003 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.13■■□□□ 1.45
CCDC28B-204ENST00000469003 PMFBP1Q8TBY8 1022 aa24.12■■□□□ 1.45
CCDC28B-204ENST00000469003 SLIT2O94813 1529 aa24.11■■□□□ 1.45
CCDC28B-204ENST00000469003 KIAA1210Q9ULL0 1709 aa24.11■■□□□ 1.45
CCDC28B-204ENST00000469003 WASLO00401 505 aaPredicted RBP24.11■■□□□ 1.45
CCDC28B-204ENST00000469003 ARHGEF10O15013 1369 aa24.11■■□□□ 1.45
CCDC28B-204ENST00000469003 PRR36Q9H6K5 1346 aa24.1■■□□□ 1.45
CCDC28B-204ENST00000469003 ABCA3Q99758 1704 aa24.1■■□□□ 1.45
CCDC28B-204ENST00000469003 TRPM3Q9HCF6 1732 aaPredicted RBP24.09■■□□□ 1.45
CCDC28B-204ENST00000469003 HAP1P54257 671 aaPredicted RBP24.08■■□□□ 1.45
CCDC28B-204ENST00000469003 LMOD2Q6P5Q4 547 aa24.08■■□□□ 1.45
CCDC28B-204ENST00000469003 UNC5CLQ8IV45 518 aa24.07■■□□□ 1.44
CCDC28B-204ENST00000469003 ZRANB1Q9UGI0 708 aa24.07■■□□□ 1.44
CCDC28B-204ENST00000469003 CABLES1Q8TDN4 633 aa24.06■■□□□ 1.44
CCDC28B-204ENST00000469003 GJD4Q96KN9 370 aaPredicted RBP24.06■■□□□ 1.44
CCDC28B-204ENST00000469003 GPRASP1Q5JY77 1395 aa24.05■■□□□ 1.44
CCDC28B-204ENST00000469003 ALS2Q96Q42 1657 aa24.05■■□□□ 1.44
CCDC28B-204ENST00000469003 ITSN1Q15811 1721 aa24.04■■□□□ 1.44
CCDC28B-204ENST00000469003 NWD2Q9ULI1 1742 aa24.03■■□□□ 1.44
CCDC28B-204ENST00000469003 PLCH1Q4KWH8 1693 aa24.02■■□□□ 1.44
CCDC28B-204ENST00000469003 ATP7BP35670 1465 aa24.02■■□□□ 1.44
CCDC28B-204ENST00000469003 PLEKHG5O94827 1062 aa24.02■■□□□ 1.44
CCDC28B-204ENST00000469003 GLI3P10071 1580 aa24.02■■□□□ 1.44
CCDC28B-204ENST00000469003 EP400Q96L91 3159 aa24.01■■□□□ 1.43
CCDC28B-204ENST00000469003 RALGAPBQ86X10 1494 aa24.01■■□□□ 1.43
CCDC28B-204ENST00000469003 NGDNQ8NEJ9 315 aaKnown RBP24.01■■□□□ 1.43
CCDC28B-204ENST00000469003 NBPF1Q3BBV0 1214 aa23.99■■□□□ 1.43
CCDC28B-204ENST00000469003 NUDT16Q96DE0 195 aaKnown RBP23.99■■□□□ 1.43
CCDC28B-204ENST00000469003 CDK19Q9BWU1 502 aa23.97■■□□□ 1.43
CCDC28B-204ENST00000469003 VPS72Q15906 364 aa23.96■■□□□ 1.43
CCDC28B-204ENST00000469003 CRYBG1Q9Y4K1 1723 aa23.96■■□□□ 1.43
CCDC28B-204ENST00000469003 TOPAZ1Q8N9V7 1692 aa23.95■■□□□ 1.43
CCDC28B-204ENST00000469003 FAM83GA6ND36 823 aa23.95■■□□□ 1.42
CCDC28B-204ENST00000469003 CCDC125Q86Z20 511 aa23.94■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms