RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 YTHDC2Q9H6S0 1430 aaKnown RBP10.22□□□□□ -0.77
COL6A3-208ENST00000468792 PTPRMP28827 1452 aa10.22□□□□□ -0.77
COL6A3-208ENST00000468792 FKBP8Q14318 412 aa10.21□□□□□ -0.77
COL6A3-208ENST00000468792 TMEM132EQ6IEE7 984 aa10.21□□□□□ -0.77
COL6A3-208ENST00000468792 NGEFQ8N5V2 710 aa10.21□□□□□ -0.77
COL6A3-208ENST00000468792 CARD14Q9BXL6 1004 aa10.21□□□□□ -0.77
COL6A3-208ENST00000468792 ABCC11Q96J66 1382 aa10.21□□□□□ -0.78
COL6A3-208ENST00000468792 RIMS2Q9UQ26 1411 aa10.21□□□□□ -0.78
COL6A3-208ENST00000468792 ATAD2Q6PL18 1390 aa10.2□□□□□ -0.78
COL6A3-208ENST00000468792 ANKRD36BQ8N2N9 1353 aa10.2□□□□□ -0.78
COL6A3-208ENST00000468792 NLRP1Q9C000 1473 aa10.2□□□□□ -0.78
COL6A3-208ENST00000468792 TULP4Q9NRJ4 1543 aa10.2□□□□□ -0.78
COL6A3-208ENST00000468792 POLR3AO14802 1390 aaPredicted RBP10.19□□□□□ -0.78
COL6A3-208ENST00000468792 TNRQ92752 1358 aa10.19□□□□□ -0.78
COL6A3-208ENST00000468792 STAG3Q9UJ98 1225 aa10.19□□□□□ -0.78
COL6A3-208ENST00000468792 SETD1AO15047 1707 aaKnown RBP10.19□□□□□ -0.78
COL6A3-208ENST00000468792 TECPR2O15040 1411 aa10.18□□□□□ -0.78
COL6A3-208ENST00000468792 MED14O60244 1454 aa10.17□□□□□ -0.78
COL6A3-208ENST00000468792 CGNL1Q0VF96 1302 aa10.17□□□□□ -0.78
COL6A3-208ENST00000468792 SLC4A2P04920 1241 aa10.17□□□□□ -0.78
COL6A3-208ENST00000468792 FAM135BQ49AJ0 1406 aa10.16□□□□□ -0.78
COL6A3-208ENST00000468792 TMEM2Q9UHN6 1383 aa10.16□□□□□ -0.78
COL6A3-208ENST00000468792 NSD3Q9BZ95 1437 aa10.16□□□□□ -0.78
COL6A3-208ENST00000468792 NRXN3Q9Y4C0 1643 aa10.15□□□□□ -0.78
COL6A3-208ENST00000468792 SLC12A5Q9H2X9 1139 aa10.15□□□□□ -0.78
COL6A3-208ENST00000468792 KNDC1Q76NI1 1749 aa10.15□□□□□ -0.78
COL6A3-208ENST00000468792 UBR1Q8IWV7 1749 aa10.15□□□□□ -0.78
COL6A3-208ENST00000468792 CNGB1Q14028 1251 aaPredicted RBP10.14□□□□□ -0.79
COL6A3-208ENST00000468792 MLECQ14165 292 aa10.14□□□□□ -0.79
COL6A3-208ENST00000468792 WDR43Q15061 677 aaKnown RBP eCLIP10.14□□□□□ -0.79
COL6A3-208ENST00000468792 NUTM2DQ5VT03 806 aaPredicted RBP10.14□□□□□ -0.79
COL6A3-208ENST00000468792 PRAM1Q96QH2 718 aa10.14□□□□□ -0.79
COL6A3-208ENST00000468792 ADAMTS8Q9UP79 889 aa10.14□□□□□ -0.79
COL6A3-208ENST00000468792 PPP4R2Q9NY27 417 aa10.13□□□□□ -0.79
COL6A3-208ENST00000468792 TERF2IPQ9NYB0 399 aa10.13□□□□□ -0.79
COL6A3-208ENST00000468792 POGKQ9P215 609 aa10.13□□□□□ -0.79
COL6A3-208ENST00000468792 PLEKHG1Q9ULL1 1385 aa10.13□□□□□ -0.79
COL6A3-208ENST00000468792 SLIT1O75093 1534 aa10.12□□□□□ -0.79
COL6A3-208ENST00000468792 ZNF521Q96K83 1311 aa10.12□□□□□ -0.79
COL6A3-208ENST00000468792 ARHGAP23Q9P227 1491 aa10.12□□□□□ -0.79
COL6A3-208ENST00000468792 DCAF8L1A6NGE4 600 aa10.12□□□□□ -0.79
COL6A3-208ENST00000468792 MYCNP04198 464 aaPredicted RBP10.12□□□□□ -0.79
COL6A3-208ENST00000468792 CPS1P31327 1500 aa10.12□□□□□ -0.79
COL6A3-208ENST00000468792 ATP7BP35670 1465 aa10.11□□□□□ -0.79
COL6A3-208ENST00000468792 MORC1Q86VD1 984 aa10.11□□□□□ -0.79
COL6A3-208ENST00000468792 CD163L1Q9NR16 1453 aa10.1□□□□□ -0.79
COL6A3-208ENST00000468792 CDK19Q9BWU1 502 aa10.1□□□□□ -0.79
COL6A3-208ENST00000468792 CABP2Q9NPB3 220 aa10.1□□□□□ -0.79
COL6A3-208ENST00000468792 STK26Q9P289 416 aa10.1□□□□□ -0.79
COL6A3-208ENST00000468792 A0A1W2PP64 1363 aa10.1□□□□□ -0.79
COL6A3-208ENST00000468792 ADAMTS13Q76LX8 1427 aa10.09□□□□□ -0.79
COL6A3-208ENST00000468792 SRPK2P78362 688 aaKnown RBP10.09□□□□□ -0.79
COL6A3-208ENST00000468792 HDGFL2Q7Z4V5 671 aaPredicted RBP10.09□□□□□ -0.79
COL6A3-208ENST00000468792 METP08581 1390 aa10.09□□□□□ -0.79
COL6A3-208ENST00000468792 C3P01024 1663 aa10.09□□□□□ -0.79
COL6A3-208ENST00000468792 ANKRD26Q9UPS8 1709 aa10.08□□□□□ -0.8
COL6A3-208ENST00000468792 TRMT2AQ8IZ69 625 aaKnown RBP10.08□□□□□ -0.8
COL6A3-208ENST00000468792 CFAP53Q96M91 514 aa10.08□□□□□ -0.8
COL6A3-208ENST00000468792 ADGRB2O60241 1585 aa10.08□□□□□ -0.8
COL6A3-208ENST00000468792 DIP2AQ14689 1571 aa10.08□□□□□ -0.8
COL6A3-208ENST00000468792 CPSF1Q10570 1443 aaKnown RBP10.07□□□□□ -0.8
COL6A3-208ENST00000468792 FER1L4A9Z1Z3 1794 aa10.07□□□□□ -0.8
COL6A3-208ENST00000468792 WASLO00401 505 aaPredicted RBP10.07□□□□□ -0.8
COL6A3-208ENST00000468792 THEMISQ8N1K5 641 aaPredicted RBP10.07□□□□□ -0.8
COL6A3-208ENST00000468792 RCAN3Q9UKA8 241 aa10.07□□□□□ -0.8
COL6A3-208ENST00000468792 TBX22Q9Y458 520 aa10.07□□□□□ -0.8
COL6A3-208ENST00000468792 EID1Q9Y6B2 187 aa10.07□□□□□ -0.8
COL6A3-208ENST00000468792 MINK1Q8N4C8 1332 aaPredicted RBP10.07□□□□□ -0.8
COL6A3-208ENST00000468792 SHPRHQ149N8 1683 aa10.06□□□□□ -0.8
COL6A3-208ENST00000468792 CDC42BPGQ6DT37 1551 aa10.06□□□□□ -0.8
COL6A3-208ENST00000468792 PNPLA6Q8IY17 1366 aa10.06□□□□□ -0.8
COL6A3-208ENST00000468792 FYB1O15117 783 aa10.06□□□□□ -0.8
COL6A3-208ENST00000468792 ATXN8OSP0DMR3 200 aa10.06□□□□□ -0.8
COL6A3-208ENST00000468792 GOLGA2Q08379 1002 aa10.06□□□□□ -0.8
COL6A3-208ENST00000468792 CCDC27Q2M243 656 aa10.06□□□□□ -0.8
COL6A3-208ENST00000468792 PIK3R4Q99570 1358 aa10.05□□□□□ -0.8
COL6A3-208ENST00000468792 PLEKHH1Q9ULM0 1364 aa10.05□□□□□ -0.8
COL6A3-208ENST00000468792 MTHFSP49914 203 aa10.05□□□□□ -0.8
COL6A3-208ENST00000468792 RRP1P56182 461 aaKnown RBP10.05□□□□□ -0.8
COL6A3-208ENST00000468792 EDC4Q6P2E9 1401 aaKnown RBP10.05□□□□□ -0.8
COL6A3-208ENST00000468792 LTKP29376 864 aa10.04□□□□□ -0.8
COL6A3-208ENST00000468792 SLFN5Q08AF3 891 aa10.04□□□□□ -0.8
COL6A3-208ENST00000468792 SAFB2Q14151 953 aaKnown RBP eCLIP10.04□□□□□ -0.8
COL6A3-208ENST00000468792 DUSP27Q5VZP5 1158 aa10.04□□□□□ -0.8
COL6A3-208ENST00000468792 WAPLQ7Z5K2 1190 aa10.04□□□□□ -0.8
COL6A3-208ENST00000468792 TXNDC2Q86VQ3 553 aa10.04□□□□□ -0.8
COL6A3-208ENST00000468792 RUNDC1Q96C34 613 aa10.04□□□□□ -0.8
COL6A3-208ENST00000468792 ZNF692Q9BU19 519 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-208ENST00000468792 CABP1Q9NZU7 370 aa10.04□□□□□ -0.8
COL6A3-208ENST00000468792 CCDC61Q9Y6R9 512 aa10.04□□□□□ -0.8
COL6A3-208ENST00000468792 PTCH1Q13635 1447 aa10.04□□□□□ -0.8
COL6A3-208ENST00000468792 E9PSI1 815 aa10.03□□□□□ -0.8
COL6A3-208ENST00000468792 CDCA7LQ96GN5 454 aa10.03□□□□□ -0.8
COL6A3-208ENST00000468792 BCANQ96GW7 911 aa10.03□□□□□ -0.8
COL6A3-208ENST00000468792 AATKQ6ZMQ8 1374 aa10.02□□□□□ -0.8
COL6A3-208ENST00000468792 APAF1O14727 1248 aa10.02□□□□□ -0.81
COL6A3-208ENST00000468792 TRHP20396 242 aaPredicted RBP10.02□□□□□ -0.81
COL6A3-208ENST00000468792 WDR63Q8IWG1 891 aa10.02□□□□□ -0.81
COL6A3-208ENST00000468792 PNNQ9H307 717 aaKnown RBP10.02□□□□□ -0.81
COL6A3-208ENST00000468792 COL3A1P02461 1466 aaPredicted RBP10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms