RNA–Protein interactions for RNA: ENST00000468253.1

NPHP4-206, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 781 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-206ENST00000468253 MST1RQ04912 1400 aa28.65■■■□□ 2.18
NPHP4-206ENST00000468253 KNDC1Q76NI1 1749 aa28.65■■■□□ 2.18
NPHP4-206ENST00000468253 NBPF8Q3BBV2 869 aa28.64■■■□□ 2.18
NPHP4-206ENST00000468253 BRINP3Q76B58 766 aa28.64■■■□□ 2.18
NPHP4-206ENST00000468253 CCER1Q8TC90 406 aaPredicted RBP28.64■■■□□ 2.18
NPHP4-206ENST00000468253 KIAA1210Q9ULL0 1709 aa28.63■■■□□ 2.17
NPHP4-206ENST00000468253 SAFB2Q14151 953 aaKnown RBP eCLIP28.6■■■□□ 2.17
NPHP4-206ENST00000468253 C1orf167Q5SNV9 1468 aa28.59■■■□□ 2.17
NPHP4-206ENST00000468253 NALCNQ8IZF0 1738 aa28.56■■■□□ 2.16
NPHP4-206ENST00000468253 ROCK2O75116 1388 aaKnown RBP28.55■■■□□ 2.16
NPHP4-206ENST00000468253 CDC42BPGQ6DT37 1551 aa28.54■■■□□ 2.16
NPHP4-206ENST00000468253 GPRASP1Q5JY77 1395 aa28.54■■■□□ 2.16
NPHP4-206ENST00000468253 ORAI2Q96SN7 254 aa28.54■■■□□ 2.16
NPHP4-206ENST00000468253 ROBO1Q9Y6N7 1651 aa28.54■■■□□ 2.16
NPHP4-206ENST00000468253 WASLO00401 505 aaPredicted RBP28.52■■■□□ 2.16
NPHP4-206ENST00000468253 ESCO1Q5FWF5 840 aa28.52■■■□□ 2.16
NPHP4-206ENST00000468253 MINK1Q8N4C8 1332 aaPredicted RBP28.51■■■□□ 2.15
NPHP4-206ENST00000468253 CENPJQ9HC77 1338 aaPredicted RBP28.49■■■□□ 2.15
NPHP4-206ENST00000468253 HIRIP3Q9BW71 556 aaPredicted RBP28.49■■■□□ 2.15
NPHP4-206ENST00000468253 CARD11Q9BXL7 1154 aa28.48■■■□□ 2.15
NPHP4-206ENST00000468253 NUTM2FA1L443 756 aa28.47■■■□□ 2.15
NPHP4-206ENST00000468253 EIF3AQ14152 1382 aaKnown RBP28.47■■■□□ 2.15
NPHP4-206ENST00000468253 TRPM1Q7Z4N2 1603 aa28.45■■■□□ 2.14
NPHP4-206ENST00000468253 LRRC59Q96AG4 307 aaKnown RBP28.45■■■□□ 2.14
NPHP4-206ENST00000468253 ANKARQ7Z5J8 1434 aa28.43■■■□□ 2.14
NPHP4-206ENST00000468253 AHDC1Q5TGY3 1603 aaPredicted RBP28.43■■■□□ 2.14
NPHP4-206ENST00000468253 RALGAPBQ86X10 1494 aa28.43■■■□□ 2.14
NPHP4-206ENST00000468253 CDK19Q9BWU1 502 aa28.43■■■□□ 2.14
NPHP4-206ENST00000468253 SOS2Q07890 1332 aaPredicted RBP28.43■■■□□ 2.14
NPHP4-206ENST00000468253 NPHP3Q7Z494 1330 aa28.42■■■□□ 2.14
NPHP4-206ENST00000468253 ADGRB2O60241 1585 aa28.41■■■□□ 2.14
NPHP4-206ENST00000468253 JCADQ9P266 1359 aa28.41■■■□□ 2.14
NPHP4-206ENST00000468253 PHF8Q9UPP1 1060 aa28.41■■■□□ 2.14
NPHP4-206ENST00000468253 FOXO3O43524 673 aa28.4■■■□□ 2.14
NPHP4-206ENST00000468253 DDX17Q92841 729 aaKnown RBP28.39■■■□□ 2.14
NPHP4-206ENST00000468253 ARHGEF28Q8N1W1 1705 aaKnown RBP28.38■■■□□ 2.13
NPHP4-206ENST00000468253 NUDT16Q96DE0 195 aaKnown RBP28.38■■■□□ 2.13
NPHP4-206ENST00000468253 FMN2Q9NZ56 1722 aa28.36■■■□□ 2.13
NPHP4-206ENST00000468253 PRR36Q9H6K5 1346 aa28.36■■■□□ 2.13
NPHP4-206ENST00000468253 SLC24A1O60721 1099 aa28.35■■■□□ 2.13
NPHP4-206ENST00000468253 CCDC61Q9Y6R9 512 aa28.35■■■□□ 2.13
NPHP4-206ENST00000468253 PHLPP1O60346 1717 aa28.34■■■□□ 2.13
NPHP4-206ENST00000468253 EVC2Q86UK5 1308 aa28.33■■■□□ 2.13
NPHP4-206ENST00000468253 PSME1Q06323 249 aa28.32■■■□□ 2.12
NPHP4-206ENST00000468253 SPATA31A6Q5VVP1 1343 aa28.32■■■□□ 2.12
NPHP4-206ENST00000468253 TULP4Q9NRJ4 1543 aa28.32■■■□□ 2.12
NPHP4-206ENST00000468253 COL16A1Q07092 1604 aaPredicted RBP28.32■■■□□ 2.12
NPHP4-206ENST00000468253 KRT28Q7Z3Y7 464 aa28.31■■■□□ 2.12
NPHP4-206ENST00000468253 SBNO2Q9Y2G9 1366 aa28.31■■■□□ 2.12
NPHP4-206ENST00000468253 PLEKHG3A1L390 1219 aa28.3■■■□□ 2.12
NPHP4-206ENST00000468253 NHSL1Q5SYE7 1610 aa28.29■■■□□ 2.12
NPHP4-206ENST00000468253 SRPK2P78362 688 aaKnown RBP28.29■■■□□ 2.12
NPHP4-206ENST00000468253 PMFBP1Q8TBY8 1022 aa28.29■■■□□ 2.12
NPHP4-206ENST00000468253 NGDNQ8NEJ9 315 aaKnown RBP28.26■■■□□ 2.11
NPHP4-206ENST00000468253 CABP2Q9NPB3 220 aa28.26■■■□□ 2.11
NPHP4-206ENST00000468253 ST20-MTHFSA0A0A6YYL1 179 aa28.25■■■□□ 2.11
NPHP4-206ENST00000468253 PUS7Q96PZ0 661 aaKnown RBP28.25■■■□□ 2.11
NPHP4-206ENST00000468253 PXDNQ92626 1479 aa28.24■■■□□ 2.11
NPHP4-206ENST00000468253 XPCQ01831 940 aaPredicted RBP28.24■■■□□ 2.11
NPHP4-206ENST00000468253 ATP7BP35670 1465 aa28.23■■■□□ 2.11
NPHP4-206ENST00000468253 PNPLA6Q8IY17 1366 aa28.23■■■□□ 2.11
NPHP4-206ENST00000468253 SPATA31A3Q5VYP0 1347 aa28.22■■■□□ 2.11
NPHP4-206ENST00000468253 KIF1AQ12756 1690 aa28.22■■■□□ 2.11
NPHP4-206ENST00000468253 SBNO1A3KN83 1393 aa28.22■■■□□ 2.11
NPHP4-206ENST00000468253 USP32Q8NFA0 1604 aa28.21■■■□□ 2.11
NPHP4-206ENST00000468253 TESK2Q96S53 571 aa28.21■■■□□ 2.11
NPHP4-206ENST00000468253 POLR3AO14802 1390 aaPredicted RBP28.19■■■□□ 2.1
NPHP4-206ENST00000468253 DISP3Q9P2K9 1392 aa28.19■■■□□ 2.1
NPHP4-206ENST00000468253 CABP1Q9NZU7 370 aa28.18■■■□□ 2.1
NPHP4-206ENST00000468253 ACEP12821 1306 aa28.18■■■□□ 2.1
NPHP4-206ENST00000468253 USP47Q96K76 1375 aa28.17■■■□□ 2.1
NPHP4-206ENST00000468253 QRICH2Q9H0J4 1663 aa28.16■■■□□ 2.1
NPHP4-206ENST00000468253 ATAD2Q6PL18 1390 aa28.15■■■□□ 2.1
NPHP4-206ENST00000468253 RGPD8O14715 1765 aaPredicted RBP28.15■■■□□ 2.1
NPHP4-206ENST00000468253 SHPRHQ149N8 1683 aa28.14■■■□□ 2.1
NPHP4-206ENST00000468253 MED1Q15648 1581 aaPredicted RBP28.14■■■□□ 2.1
NPHP4-206ENST00000468253 PPIP5K1Q6PFW1 1433 aa28.13■■■□□ 2.09
NPHP4-206ENST00000468253 NUTM2BA6NNL0 878 aaPredicted RBP28.13■■■□□ 2.09
NPHP4-206ENST00000468253 NUTM2EB1AL46 878 aaPredicted RBP28.13■■■□□ 2.09
NPHP4-206ENST00000468253 NUTM2AQ8IVF1 878 aaPredicted RBP28.13■■■□□ 2.09
NPHP4-206ENST00000468253 ZNF692Q9BU19 519 aaPredicted RBP28.13■■■□□ 2.09
NPHP4-206ENST00000468253 PHF23Q9BUL5 403 aaPredicted RBP28.12■■■□□ 2.09
NPHP4-206ENST00000468253 ARHGEF10O15013 1369 aa28.11■■■□□ 2.09
NPHP4-206ENST00000468253 BRD4O60885 1362 aaPredicted RBP28.11■■■□□ 2.09
NPHP4-206ENST00000468253 TNS3Q68CZ2 1445 aa28.1■■■□□ 2.09
NPHP4-206ENST00000468253 TMF1P82094 1093 aa28.09■■■□□ 2.09
NPHP4-206ENST00000468253 MEX3CQ5U5Q3 659 aaKnown RBP28.09■■■□□ 2.09
NPHP4-206ENST00000468253 EIF4G2P78344 907 aaKnown RBP eCLIP28.07■■■□□ 2.082e-7■■■■■ 43
NPHP4-206ENST00000468253 CDCA8Q53HL2 280 aa28.07■■■□□ 2.08
NPHP4-206ENST00000468253 LMOD2Q6P5Q4 547 aa28.07■■■□□ 2.08
NPHP4-206ENST00000468253 PAK3O75914 559 aaPredicted RBP28.06■■■□□ 2.08
NPHP4-206ENST00000468253 RGS17Q9UGC6 210 aaPredicted RBP28.06■■■□□ 2.08
NPHP4-206ENST00000468253 LRP6O75581 1613 aa28.05■■■□□ 2.08
NPHP4-206ENST00000468253 ITSN1Q15811 1721 aa28.04■■■□□ 2.08
NPHP4-206ENST00000468253 ADAMTS2O95450 1211 aa28.02■■■□□ 2.08
NPHP4-206ENST00000468253 TOPAZ1Q8N9V7 1692 aa28.02■■■□□ 2.08
NPHP4-206ENST00000468253 COL22A1Q8NFW1 1626 aaPredicted RBP28.01■■■□□ 2.07
NPHP4-206ENST00000468253 SLC12A5Q9H2X9 1139 aa28.01■■■□□ 2.07
NPHP4-206ENST00000468253 ZNF772Q68DY9 489 aaPredicted RBP28■■■□□ 2.07
NPHP4-206ENST00000468253 TMC1Q8TDI8 760 aa28■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms