RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 PIK3C2GO75747 1445 aa25.95■■□□□ 1.74
COL7A1-205ENST00000465238 LRPPRCP42704 1394 aaKnown RBP25.95■■□□□ 1.74
COL7A1-205ENST00000465238 SOS2Q07890 1332 aaPredicted RBP25.94■■□□□ 1.74
COL7A1-205ENST00000465238 AFF2P51816 1311 aa25.93■■□□□ 1.74
COL7A1-205ENST00000465238 ABCC11Q96J66 1382 aa25.93■■□□□ 1.74
COL7A1-205ENST00000465238 KNDC1Q76NI1 1749 aa25.92■■□□□ 1.74
COL7A1-205ENST00000465238 STK26Q9P289 416 aa25.92■■□□□ 1.74
COL7A1-205ENST00000465238 RXRBP28702 533 aa25.91■■□□□ 1.74
COL7A1-205ENST00000465238 PCGF6Q9BYE7 350 aa25.9■■□□□ 1.74
COL7A1-205ENST00000465238 TMEM132EQ6IEE7 984 aa25.89■■□□□ 1.74
COL7A1-205ENST00000465238 WAPLQ7Z5K2 1190 aa25.88■■□□□ 1.73
COL7A1-205ENST00000465238 C8orf37Q96NL8 207 aa25.88■■□□□ 1.73
COL7A1-205ENST00000465238 CDK12Q9NYV4 1490 aaPredicted RBP25.87■■□□□ 1.73
COL7A1-205ENST00000465238 ESCO1Q5FWF5 840 aa25.87■■□□□ 1.73
COL7A1-205ENST00000465238 YTHDC2Q9H6S0 1430 aaKnown RBP25.87■■□□□ 1.73
COL7A1-205ENST00000465238 NPHP3Q7Z494 1330 aa25.87■■□□□ 1.73
COL7A1-205ENST00000465238 NRXN1Q9ULB1 1477 aa25.85■■□□□ 1.73
COL7A1-205ENST00000465238 MYOM2P54296 1465 aa25.85■■□□□ 1.73
COL7A1-205ENST00000465238 C14orf93Q9H972 538 aaKnown RBP25.84■■□□□ 1.73
COL7A1-205ENST00000465238 ADAMTS2O95450 1211 aa25.83■■□□□ 1.73
COL7A1-205ENST00000465238 SIRT1Q96EB6 747 aa25.83■■□□□ 1.73
COL7A1-205ENST00000465238 COL22A1Q8NFW1 1626 aaPredicted RBP25.83■■□□□ 1.73
COL7A1-205ENST00000465238 PLEKHH1Q9ULM0 1364 aa25.82■■□□□ 1.72
COL7A1-205ENST00000465238 NGLY1Q96IV0 654 aa25.82■■□□□ 1.72
COL7A1-205ENST00000465238 PXDNQ92626 1479 aa25.81■■□□□ 1.72
COL7A1-205ENST00000465238 QTRT2Q9H974 415 aaKnown RBP25.81■■□□□ 1.72
COL7A1-205ENST00000465238 FMN2Q9NZ56 1722 aa25.8■■□□□ 1.72
COL7A1-205ENST00000465238 FOXO3O43524 673 aa25.8■■□□□ 1.72
COL7A1-205ENST00000465238 DHX57Q6P158 1386 aaKnown RBP25.8■■□□□ 1.72
COL7A1-205ENST00000465238 NUTM2FA1L443 756 aa25.79■■□□□ 1.72
COL7A1-205ENST00000465238 RBM6P78332 1123 aaKnown RBP25.79■■□□□ 1.72
COL7A1-205ENST00000465238 CFAP70Q5T0N1 1121 aa25.78■■□□□ 1.72
COL7A1-205ENST00000465238 UPF1Q92900 1129 aaKnown RBP eCLIP25.77■■□□□ 1.72
COL7A1-205ENST00000465238 KIF1AQ12756 1690 aa25.75■■□□□ 1.71
COL7A1-205ENST00000465238 XPCQ01831 940 aaPredicted RBP25.74■■□□□ 1.71
COL7A1-205ENST00000465238 FNBP4Q8N3X1 1017 aaPredicted RBP25.73■■□□□ 1.71
COL7A1-205ENST00000465238 USP21Q9UK80 565 aa25.73■■□□□ 1.71
COL7A1-205ENST00000465238 RGS12O14924 1447 aa25.72■■□□□ 1.71
COL7A1-205ENST00000465238 DLC1Q96QB1 1528 aa25.7■■□□□ 1.7
COL7A1-205ENST00000465238 TRPC5Q9UL62 973 aaPredicted RBP25.7■■□□□ 1.7
COL7A1-205ENST00000465238 MARF1Q9Y4F3 1742 aaKnown RBP25.7■■□□□ 1.7
COL7A1-205ENST00000465238 PRAM1Q96QH2 718 aa25.69■■□□□ 1.7
COL7A1-205ENST00000465238 RGPD8O14715 1765 aaPredicted RBP25.68■■□□□ 1.7
COL7A1-205ENST00000465238 SPATA31A3Q5VYP0 1347 aa25.67■■□□□ 1.7
COL7A1-205ENST00000465238 ADGRB1O14514 1584 aa25.66■■□□□ 1.7
COL7A1-205ENST00000465238 KRT28Q7Z3Y7 464 aa25.66■■□□□ 1.7
COL7A1-205ENST00000465238 STAC3Q96MF2 364 aa25.66■■□□□ 1.7
COL7A1-205ENST00000465238 POGKQ9P215 609 aa25.66■■□□□ 1.7
COL7A1-205ENST00000465238 ATRNO75882 1429 aa25.65■■□□□ 1.7
COL7A1-205ENST00000465238 SAFB2Q14151 953 aaKnown RBP eCLIP25.65■■□□□ 1.7
COL7A1-205ENST00000465238 PHF8Q9UPP1 1060 aa25.65■■□□□ 1.7
COL7A1-205ENST00000465238 DCAF11Q8TEB1 546 aa25.64■■□□□ 1.7
COL7A1-205ENST00000465238 ADGRB2O60241 1585 aa25.62■■□□□ 1.69
COL7A1-205ENST00000465238 PSME1Q06323 249 aa25.62■■□□□ 1.69
COL7A1-205ENST00000465238 KDM2AQ9Y2K7 1162 aa25.62■■□□□ 1.69
COL7A1-205ENST00000465238 ANKARQ7Z5J8 1434 aa25.62■■□□□ 1.69
COL7A1-205ENST00000465238 BCL9LQ86UU0 1499 aa25.61■■□□□ 1.69
COL7A1-205ENST00000465238 TRAK1Q9UPV9 953 aa25.6■■□□□ 1.69
COL7A1-205ENST00000465238 TNS3Q68CZ2 1445 aa25.6■■□□□ 1.69
COL7A1-205ENST00000465238 SIN3AQ96ST3 1273 aa25.58■■□□□ 1.69
COL7A1-205ENST00000465238 USP32Q8NFA0 1604 aa25.58■■□□□ 1.69
COL7A1-205ENST00000465238 SBNO1A3KN83 1393 aa25.57■■□□□ 1.68
COL7A1-205ENST00000465238 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.57■■□□□ 1.68
COL7A1-205ENST00000465238 NEUROD1Q13562 356 aa25.57■■□□□ 1.68
COL7A1-205ENST00000465238 ATAD2Q6PL18 1390 aa25.56■■□□□ 1.68
COL7A1-205ENST00000465238 EIF3AQ14152 1382 aaKnown RBP25.56■■□□□ 1.68
COL7A1-205ENST00000465238 SLIT2O94813 1529 aa25.54■■□□□ 1.68
COL7A1-205ENST00000465238 GJD4Q96KN9 370 aaPredicted RBP25.54■■□□□ 1.68
COL7A1-205ENST00000465238 ARHGEF10O15013 1369 aa25.54■■□□□ 1.68
COL7A1-205ENST00000465238 HAP1P54257 671 aaPredicted RBP25.53■■□□□ 1.68
COL7A1-205ENST00000465238 PMFBP1Q8TBY8 1022 aa25.53■■□□□ 1.68
COL7A1-205ENST00000465238 HIRIP3Q9BW71 556 aaPredicted RBP25.53■■□□□ 1.68
COL7A1-205ENST00000465238 MINK1Q8N4C8 1332 aaPredicted RBP25.53■■□□□ 1.68
COL7A1-205ENST00000465238 UNC5CLQ8IV45 518 aa25.52■■□□□ 1.68
COL7A1-205ENST00000465238 TULP4Q9NRJ4 1543 aa25.51■■□□□ 1.67
COL7A1-205ENST00000465238 LMOD2Q6P5Q4 547 aa25.5■■□□□ 1.67
COL7A1-205ENST00000465238 WASLO00401 505 aaPredicted RBP25.49■■□□□ 1.67
COL7A1-205ENST00000465238 CABLES1Q8TDN4 633 aa25.49■■□□□ 1.67
COL7A1-205ENST00000465238 ABCA3Q99758 1704 aa25.49■■□□□ 1.67
COL7A1-205ENST00000465238 ARHGEF28Q8N1W1 1705 aaKnown RBP25.48■■□□□ 1.67
COL7A1-205ENST00000465238 EP400Q96L91 3159 aa25.48■■□□□ 1.67
COL7A1-205ENST00000465238 GPRASP1Q5JY77 1395 aa25.47■■□□□ 1.67
COL7A1-205ENST00000465238 PRR36Q9H6K5 1346 aa25.47■■□□□ 1.67
COL7A1-205ENST00000465238 TRPM3Q9HCF6 1732 aaPredicted RBP25.46■■□□□ 1.67
COL7A1-205ENST00000465238 RALGAPBQ86X10 1494 aa25.46■■□□□ 1.67
COL7A1-205ENST00000465238 NWD2Q9ULI1 1742 aa25.46■■□□□ 1.67
COL7A1-205ENST00000465238 GLI3P10071 1580 aa25.45■■□□□ 1.66
COL7A1-205ENST00000465238 PLCH1Q4KWH8 1693 aa25.45■■□□□ 1.66
COL7A1-205ENST00000465238 PLEKHG5O94827 1062 aa25.44■■□□□ 1.66
COL7A1-205ENST00000465238 KIAA1210Q9ULL0 1709 aa25.43■■□□□ 1.66
COL7A1-205ENST00000465238 CCER1Q8TC90 406 aaPredicted RBP25.43■■□□□ 1.66
COL7A1-205ENST00000465238 L3MBTL2Q969R5 705 aa25.43■■□□□ 1.66
COL7A1-205ENST00000465238 ALS2Q96Q42 1657 aa25.42■■□□□ 1.66
COL7A1-205ENST00000465238 ITSN1Q15811 1721 aa25.42■■□□□ 1.66
COL7A1-205ENST00000465238 VPS72Q15906 364 aa25.41■■□□□ 1.66
COL7A1-205ENST00000465238 CLSPNQ9HAW4 1339 aa25.4■■□□□ 1.66
COL7A1-205ENST00000465238 CCDC125Q86Z20 511 aa25.4■■□□□ 1.66
COL7A1-205ENST00000465238 NGDNQ8NEJ9 315 aaKnown RBP25.4■■□□□ 1.66
COL7A1-205ENST00000465238 ATP7BP35670 1465 aa25.39■■□□□ 1.65
COL7A1-205ENST00000465238 TONSLQ96HA7 1378 aa25.38■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms