RNA–Protein interactions for RNA: ENST00000463727.1

PTPRE-205, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best)

Gene PTPRE, Length 3,944 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-205ENST00000463727 GZF1Q9H116 711 aaPredicted RBP13.15□□□□□ -0.3
PTPRE-205ENST00000463727 RIPK4P57078 832 aa13.15□□□□□ -0.3
PTPRE-205ENST00000463727 OSCARQ8IYS5 282 aa13.15□□□□□ -0.3
PTPRE-205ENST00000463727 CARD14Q9BXL6 1004 aa13.15□□□□□ -0.3
PTPRE-205ENST00000463727 CALD1Q05682 793 aaKnown RBP13.14□□□□□ -0.31
PTPRE-205ENST00000463727 DIAPH1O60610 1272 aaKnown RBP13.14□□□□□ -0.31
PTPRE-205ENST00000463727 BRPF3Q9ULD4 1205 aa13.14□□□□□ -0.31
PTPRE-205ENST00000463727 NPC1L1Q9UHC9 1359 aa13.14□□□□□ -0.31
PTPRE-205ENST00000463727 MAGI2Q86UL8 1455 aa13.14□□□□□ -0.31
PTPRE-205ENST00000463727 GOLGA6L22H0YM25 854 aa13.13□□□□□ -0.31
PTPRE-205ENST00000463727 TSR2Q969E8 191 aaKnown RBP13.13□□□□□ -0.31
PTPRE-205ENST00000463727 EXOSC9Q06265 439 aaKnown RBP13.13□□□□□ -0.31
PTPRE-205ENST00000463727 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.13□□□□□ -0.31
PTPRE-205ENST00000463727 MAST1Q9Y2H9 1570 aa13.13□□□□□ -0.31
PTPRE-205ENST00000463727 FANCAO15360 1455 aa13.12□□□□□ -0.31
PTPRE-205ENST00000463727 ADGRL1O94910 1474 aa13.12□□□□□ -0.31
PTPRE-205ENST00000463727 RPGRIP1LQ68CZ1 1315 aa13.11□□□□□ -0.31
PTPRE-205ENST00000463727 PRDM15P57071 1507 aaPredicted RBP13.11□□□□□ -0.31
PTPRE-205ENST00000463727 MVPQ14764 893 aaKnown RBP13.11□□□□□ -0.31
PTPRE-205ENST00000463727 TRIM44Q96DX7 344 aaPredicted RBP13.11□□□□□ -0.31
PTPRE-205ENST00000463727 C22orf23Q9BZE7 217 aa13.11□□□□□ -0.31
PTPRE-205ENST00000463727 RTEL1-TNFRSF6BF6WH68 1400 aa13.11□□□□□ -0.31
PTPRE-205ENST00000463727 NOS1P29475 1434 aa13.11□□□□□ -0.31
PTPRE-205ENST00000463727 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.1□□□□□ -0.31
PTPRE-205ENST00000463727 TRPM1Q7Z4N2 1603 aa13.1□□□□□ -0.31
PTPRE-205ENST00000463727 GOLGA6L3A6NEY3 463 aa13.1□□□□□ -0.31
PTPRE-205ENST00000463727 WDR7Q9Y4E6 1490 aa13.1□□□□□ -0.31
PTPRE-205ENST00000463727 ELL2O00472 640 aaPredicted RBP13.09□□□□□ -0.31
PTPRE-205ENST00000463727 C14orf93Q9H972 538 aaKnown RBP13.09□□□□□ -0.31
PTPRE-205ENST00000463727 KIF16BQ96L93 1317 aa13.09□□□□□ -0.31
PTPRE-205ENST00000463727 POLR3AO14802 1390 aaPredicted RBP13.09□□□□□ -0.31
PTPRE-205ENST00000463727 ZNF521Q96K83 1311 aa13.09□□□□□ -0.31
PTPRE-205ENST00000463727 CT47B1P0C2W7 299 aaPredicted RBP13.09□□□□□ -0.31
PTPRE-205ENST00000463727 DMRT2Q9Y5R5 561 aa13.08□□□□□ -0.31
PTPRE-205ENST00000463727 ANKRD45Q5TZF3 282 aa13.08□□□□□ -0.32
PTPRE-205ENST00000463727 MLECQ14165 292 aa13.07□□□□□ -0.32
PTPRE-205ENST00000463727 CASC1Q6TDU7 716 aa13.07□□□□□ -0.32
PTPRE-205ENST00000463727 LNPKQ9C0E8 428 aa13.07□□□□□ -0.32
PTPRE-205ENST00000463727 CHMP5Q9NZZ3 219 aa13.07□□□□□ -0.32
PTPRE-205ENST00000463727 ATP10AO60312 1499 aa13.07□□□□□ -0.32
PTPRE-205ENST00000463727 ATF7IPQ6VMQ6 1270 aa13.07□□□□□ -0.32
PTPRE-205ENST00000463727 GBP4Q96PP9 640 aa13.07□□□□□ -0.32
PTPRE-205ENST00000463727 ABCC1P33527 1531 aa13.07□□□□□ -0.32
PTPRE-205ENST00000463727 TMPOP42166 694 aaKnown RBP13.06□□□□□ -0.32
PTPRE-205ENST00000463727 HAP1P54257 671 aaPredicted RBP13.06□□□□□ -0.32
PTPRE-205ENST00000463727 PCDHB15Q9Y5E8 787 aa13.06□□□□□ -0.32
PTPRE-205ENST00000463727 PRAM1Q96QH2 718 aa13.06□□□□□ -0.32
PTPRE-205ENST00000463727 NOB1Q9ULX3 412 aaKnown RBP13.06□□□□□ -0.32
PTPRE-205ENST00000463727 TRMT2AQ8IZ69 625 aaKnown RBP13.06□□□□□ -0.32
PTPRE-205ENST00000463727 ASXL2Q76L83 1435 aa13.05□□□□□ -0.32
PTPRE-205ENST00000463727 NCLP19338 710 aaKnown RBP13.05□□□□□ -0.32
PTPRE-205ENST00000463727 RAPGEF3O95398 923 aa13.05□□□□□ -0.32
PTPRE-205ENST00000463727 LMOD3Q0VAK6 560 aa13.05□□□□□ -0.32
PTPRE-205ENST00000463727 PLXNC1O60486 1568 aa13.04□□□□□ -0.32
PTPRE-205ENST00000463727 SLC52A1Q9NWF4 448 aa13.04□□□□□ -0.32
PTPRE-205ENST00000463727 HMOX1P09601 288 aa13.04□□□□□ -0.32
PTPRE-205ENST00000463727 CFAP44Q96MT7 982 aa13.04□□□□□ -0.32
PTPRE-205ENST00000463727 SSH1Q8WYL5 1049 aa13.03□□□□□ -0.32
PTPRE-205ENST00000463727 APBB1O00213 710 aa13.03□□□□□ -0.32
PTPRE-205ENST00000463727 RLBP1P12271 317 aa13.03□□□□□ -0.32
PTPRE-205ENST00000463727 IQGAP3Q86VI3 1631 aa13.03□□□□□ -0.32
PTPRE-205ENST00000463727 UNC13BO14795 1591 aa13.03□□□□□ -0.32
PTPRE-205ENST00000463727 DDX11L8A8MPP1 907 aa13.03□□□□□ -0.32
PTPRE-205ENST00000463727 PRKAR2BP31323 418 aa13.03□□□□□ -0.32
PTPRE-205ENST00000463727 FOXD4L1Q9NU39 408 aa13.03□□□□□ -0.32
PTPRE-205ENST00000463727 TNNQ9UQP3 1299 aa13.03□□□□□ -0.32
PTPRE-205ENST00000463727 SOX12O15370 315 aa13.02□□□□□ -0.32
PTPRE-205ENST00000463727 CCDC27Q2M243 656 aa13.02□□□□□ -0.32
PTPRE-205ENST00000463727 NAP1L5Q96NT1 182 aaPredicted RBP13.02□□□□□ -0.33
PTPRE-205ENST00000463727 SEC24BO95487 1268 aa13.02□□□□□ -0.33
PTPRE-205ENST00000463727 PLPPR3Q6T4P5 718 aa13.01□□□□□ -0.33
PTPRE-205ENST00000463727 CABP1Q9NZU7 370 aa13.01□□□□□ -0.33
PTPRE-205ENST00000463727 HDGFP51858 240 aaKnown RBP13.01□□□□□ -0.33
PTPRE-205ENST00000463727 TRIM27P14373 513 aa13.01□□□□□ -0.33
PTPRE-205ENST00000463727 GNAI1P63096 354 aa13.01□□□□□ -0.33
PTPRE-205ENST00000463727 TMEM57Q8N5G2 664 aa13.01□□□□□ -0.33
PTPRE-205ENST00000463727 ATAD2Q6PL18 1390 aa13.01□□□□□ -0.33
PTPRE-205ENST00000463727 NSD2O96028 1365 aa13□□□□□ -0.33
PTPRE-205ENST00000463727 TBC1D32Q96NH3 1257 aa13□□□□□ -0.33
PTPRE-205ENST00000463727 TBC1D2Q9BYX2 928 aa13□□□□□ -0.33
PTPRE-205ENST00000463727 SYNMO15061 1565 aa13□□□□□ -0.33
PTPRE-205ENST00000463727 IDI1Q13907 227 aa13□□□□□ -0.33
PTPRE-205ENST00000463727 ARAP3Q8WWN8 1544 aa13□□□□□ -0.33
PTPRE-205ENST00000463727 COG3Q96JB2 828 aa13□□□□□ -0.33
PTPRE-205ENST00000463727 CDK19Q9BWU1 502 aa13□□□□□ -0.33
PTPRE-205ENST00000463727 TRPM2O94759 1503 aa13□□□□□ -0.33
PTPRE-205ENST00000463727 CD109Q6YHK3 1445 aa12.99□□□□□ -0.33
PTPRE-205ENST00000463727 PTMSP20962 102 aa12.99□□□□□ -0.33
PTPRE-205ENST00000463727 ABCA9Q8IUA7 1624 aa12.99□□□□□ -0.33
PTPRE-205ENST00000463727 PTPRTO14522 1441 aa12.99□□□□□ -0.33
PTPRE-205ENST00000463727 ANO8Q9HCE9 1232 aaPredicted RBP12.99□□□□□ -0.33
PTPRE-205ENST00000463727 ATP7AQ04656 1500 aa12.99□□□□□ -0.33
PTPRE-205ENST00000463727 API5Q9BZZ5 524 aaKnown RBP12.98□□□□□ -0.33
PTPRE-205ENST00000463727 ANKRD36BQ8N2N9 1353 aa12.98□□□□□ -0.33
PTPRE-205ENST00000463727 FCHSD2O94868 740 aa12.98□□□□□ -0.33
PTPRE-205ENST00000463727 ERVK-7P63135 1459 aa12.98□□□□□ -0.33
PTPRE-205ENST00000463727 ZFYVE16Q7Z3T8 1539 aa12.97□□□□□ -0.33
PTPRE-205ENST00000463727 TRAK2O60296 914 aa12.97□□□□□ -0.33
PTPRE-205ENST00000463727 RTF1Q92541 710 aaKnown RBP12.97□□□□□ -0.33
PTPRE-205ENST00000463727 ABCC11Q96J66 1382 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms