RNA–Protein interactions for RNA: ENST00000463184.1

VARS-221, Transcript of valyl-tRNA synthetase, humanhuman

TSL 2

Gene VARS, Length 619 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-221ENST00000463184 RGL3Q3MIN7 710 aa29.57■■■□□ 2.32
VARS-221ENST00000463184 ESCO1Q5FWF5 840 aa29.57■■■□□ 2.32
VARS-221ENST00000463184 ANKRD30BQ9BXX2 1392 aa29.56■■■□□ 2.32
VARS-221ENST00000463184 NPHP3Q7Z494 1330 aa29.56■■■□□ 2.32
VARS-221ENST00000463184 MPHOSPH9Q99550 1183 aa29.55■■■□□ 2.32
VARS-221ENST00000463184 USP21Q9UK80 565 aa29.54■■■□□ 2.32
VARS-221ENST00000463184 CDC42BPGQ6DT37 1551 aa29.54■■■□□ 2.32
VARS-221ENST00000463184 SPATA31E1Q6ZUB1 1445 aa29.54■■■□□ 2.32
VARS-221ENST00000463184 FNBP4Q8N3X1 1017 aaPredicted RBP29.53■■■□□ 2.32
VARS-221ENST00000463184 STK26Q9P289 416 aa29.52■■■□□ 2.32
VARS-221ENST00000463184 TRPC5Q9UL62 973 aaPredicted RBP29.52■■■□□ 2.32
VARS-221ENST00000463184 TECPR2O15040 1411 aa29.52■■■□□ 2.32
VARS-221ENST00000463184 LRPPRCP42704 1394 aaKnown RBP29.52■■■□□ 2.32
VARS-221ENST00000463184 WAPLQ7Z5K2 1190 aa29.5■■■□□ 2.31
VARS-221ENST00000463184 ABCC11Q96J66 1382 aa29.5■■■□□ 2.31
VARS-221ENST00000463184 COL22A1Q8NFW1 1626 aaPredicted RBP29.49■■■□□ 2.31
VARS-221ENST00000463184 FOXO3O43524 673 aa29.48■■■□□ 2.31
VARS-221ENST00000463184 TMEM132EQ6IEE7 984 aa29.46■■■□□ 2.31
VARS-221ENST00000463184 PXDNQ92626 1479 aa29.46■■■□□ 2.31
VARS-221ENST00000463184 ACIN1Q9UKV3 1341 aaKnown RBP29.45■■■□□ 2.31
VARS-221ENST00000463184 MYOM2P54296 1465 aa29.45■■■□□ 2.31
VARS-221ENST00000463184 PIK3C2GO75747 1445 aa29.45■■■□□ 2.3
VARS-221ENST00000463184 IFT172Q9UG01 1749 aa29.44■■■□□ 2.3
VARS-221ENST00000463184 NUTM2FA1L443 756 aa29.43■■■□□ 2.3
VARS-221ENST00000463184 XPCQ01831 940 aaPredicted RBP29.43■■■□□ 2.3
VARS-221ENST00000463184 ATRNO75882 1429 aa29.43■■■□□ 2.3
VARS-221ENST00000463184 ATAD2Q6PL18 1390 aa29.41■■■□□ 2.3
VARS-221ENST00000463184 PLEKHH1Q9ULM0 1364 aa29.41■■■□□ 2.3
VARS-221ENST00000463184 SIRT1Q96EB6 747 aa29.41■■■□□ 2.3
VARS-221ENST00000463184 KNDC1Q76NI1 1749 aa29.4■■■□□ 2.3
VARS-221ENST00000463184 YTHDC2Q9H6S0 1430 aaKnown RBP29.4■■■□□ 2.3
VARS-221ENST00000463184 C14orf93Q9H972 538 aaKnown RBP29.38■■■□□ 2.29
VARS-221ENST00000463184 BCL9LQ86UU0 1499 aa29.36■■■□□ 2.29
VARS-221ENST00000463184 SPATA31A3Q5VYP0 1347 aa29.34■■■□□ 2.29
VARS-221ENST00000463184 FMN2Q9NZ56 1722 aa29.33■■■□□ 2.29
VARS-221ENST00000463184 MARF1Q9Y4F3 1742 aaKnown RBP29.32■■■□□ 2.28
VARS-221ENST00000463184 DHX57Q6P158 1386 aaKnown RBP29.32■■■□□ 2.28
VARS-221ENST00000463184 KRT28Q7Z3Y7 464 aa29.31■■■□□ 2.28
VARS-221ENST00000463184 GJD4Q96KN9 370 aaPredicted RBP29.31■■■□□ 2.28
VARS-221ENST00000463184 KIF1AQ12756 1690 aa29.3■■■□□ 2.28
VARS-221ENST00000463184 NRXN1Q9ULB1 1477 aa29.29■■■□□ 2.28
VARS-221ENST00000463184 CFAP70Q5T0N1 1121 aa29.29■■■□□ 2.28
VARS-221ENST00000463184 PSME1Q06323 249 aa29.27■■■□□ 2.28
VARS-221ENST00000463184 UNC5CLQ8IV45 518 aa29.27■■■□□ 2.28
VARS-221ENST00000463184 PHF8Q9UPP1 1060 aa29.27■■■□□ 2.28
VARS-221ENST00000463184 CCDC125Q86Z20 511 aa29.26■■■□□ 2.27
VARS-221ENST00000463184 SLIT2O94813 1529 aa29.24■■■□□ 2.27
VARS-221ENST00000463184 PRAM1Q96QH2 718 aa29.23■■■□□ 2.27
VARS-221ENST00000463184 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.22■■■□□ 2.27
VARS-221ENST00000463184 TNS3Q68CZ2 1445 aa29.2■■■□□ 2.27
VARS-221ENST00000463184 HAP1P54257 671 aaPredicted RBP29.2■■■□□ 2.26
VARS-221ENST00000463184 SAFB2Q14151 953 aaKnown RBP eCLIP29.2■■■□□ 2.26
VARS-221ENST00000463184 SBNO1A3KN83 1393 aa29.19■■■□□ 2.26
VARS-221ENST00000463184 EP400Q96L91 3159 aa29.19■■■□□ 2.26
VARS-221ENST00000463184 POGKQ9P215 609 aa29.19■■■□□ 2.26
VARS-221ENST00000463184 RGPD8O14715 1765 aaPredicted RBP29.18■■■□□ 2.26
VARS-221ENST00000463184 RALGAPBQ86X10 1494 aa29.17■■■□□ 2.26
VARS-221ENST00000463184 USP32Q8NFA0 1604 aa29.17■■■□□ 2.26
VARS-221ENST00000463184 DLC1Q96QB1 1528 aa29.17■■■□□ 2.26
VARS-221ENST00000463184 RAB3GAP2Q9H2M9 1393 aa29.16■■■□□ 2.26
VARS-221ENST00000463184 ZRANB1Q9UGI0 708 aa29.16■■■□□ 2.26
VARS-221ENST00000463184 CABLES1Q8TDN4 633 aa29.15■■■□□ 2.26
VARS-221ENST00000463184 ARHGEF10O15013 1369 aa29.14■■■□□ 2.26
VARS-221ENST00000463184 GLI3P10071 1580 aa29.13■■■□□ 2.25
VARS-221ENST00000463184 ANKARQ7Z5J8 1434 aa29.13■■■□□ 2.25
VARS-221ENST00000463184 LMOD2Q6P5Q4 547 aa29.13■■■□□ 2.25
VARS-221ENST00000463184 VPS72Q15906 364 aa29.12■■■□□ 2.25
VARS-221ENST00000463184 PMFBP1Q8TBY8 1022 aa29.11■■■□□ 2.25
VARS-221ENST00000463184 SRCAPQ6ZRS2 3230 aa29.1■■■□□ 2.25
VARS-221ENST00000463184 PLEKHG5O94827 1062 aa29.09■■■□□ 2.25
VARS-221ENST00000463184 TRAK1Q9UPV9 953 aa29.09■■■□□ 2.25
VARS-221ENST00000463184 ADGRB1O14514 1584 aa29.09■■■□□ 2.25
VARS-221ENST00000463184 SEPT12Q8IYM1 358 aa29.08■■■□□ 2.25
VARS-221ENST00000463184 STAC3Q96MF2 364 aa29.08■■■□□ 2.25
VARS-221ENST00000463184 ADGRB2O60241 1585 aa29.08■■■□□ 2.25
VARS-221ENST00000463184 ONECUT3O60422 494 aaPredicted RBP29.07■■■□□ 2.24
VARS-221ENST00000463184 BLMP54132 1417 aaPredicted RBP29.06■■■□□ 2.24
VARS-221ENST00000463184 KDM2AQ9Y2K7 1162 aa29.06■■■□□ 2.24
VARS-221ENST00000463184 EIF3AQ14152 1382 aaKnown RBP29.05■■■□□ 2.24
VARS-221ENST00000463184 FAM83GA6ND36 823 aa29.05■■■□□ 2.24
VARS-221ENST00000463184 DCAF11Q8TEB1 546 aa29.05■■■□□ 2.24
VARS-221ENST00000463184 HIRIP3Q9BW71 556 aaPredicted RBP29.05■■■□□ 2.24
VARS-221ENST00000463184 CCDC9Q9Y3X0 531 aaKnown RBP29.05■■■□□ 2.24
VARS-221ENST00000463184 NWD2Q9ULI1 1742 aa29.05■■■□□ 2.24
VARS-221ENST00000463184 GPRASP1Q5JY77 1395 aa29.03■■■□□ 2.24
VARS-221ENST00000463184 MINK1Q8N4C8 1332 aaPredicted RBP29.02■■■□□ 2.24
VARS-221ENST00000463184 PLCH1Q4KWH8 1693 aa29.02■■■□□ 2.24
VARS-221ENST00000463184 ABCA3Q99758 1704 aa29.01■■■□□ 2.23
VARS-221ENST00000463184 WASLO00401 505 aaPredicted RBP29.01■■■□□ 2.23
VARS-221ENST00000463184 BRWD3Q6RI45 1802 aa29■■■□□ 2.23
VARS-221ENST00000463184 SF3B2Q13435 895 aaKnown RBP29■■■□□ 2.23
VARS-221ENST00000463184 PRR36Q9H6K5 1346 aa28.99■■■□□ 2.23
VARS-221ENST00000463184 HRCP23327 699 aa28.99■■■□□ 2.23
VARS-221ENST00000463184 KRT27Q7Z3Y8 459 aa28.99■■■□□ 2.23
VARS-221ENST00000463184 TULP4Q9NRJ4 1543 aa28.98■■■□□ 2.23
VARS-221ENST00000463184 TRPM3Q9HCF6 1732 aaPredicted RBP28.97■■■□□ 2.23
VARS-221ENST00000463184 DEFB132Q7Z7B7 95 aa28.95■■■□□ 2.22
VARS-221ENST00000463184 NGDNQ8NEJ9 315 aaKnown RBP28.95■■■□□ 2.22
VARS-221ENST00000463184 BTG4Q9NY30 223 aa28.95■■■□□ 2.22
VARS-221ENST00000463184 ALS2Q96Q42 1657 aa28.93■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms