RNA–Protein interactions for RNA: ENST00000458610.6

CD28-203, Transcript of CD28 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD28, Length 705 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD28-203ENST00000458610 PLEKHH1Q9ULM0 1364 aa23.14■■□□□ 1.3
CD28-203ENST00000458610 NALCNQ8IZF0 1738 aa23.13■■□□□ 1.29
CD28-203ENST00000458610 SAFB2Q14151 953 aaKnown RBP eCLIP23.12■■□□□ 1.29
CD28-203ENST00000458610 C1orf167Q5SNV9 1468 aa23.11■■□□□ 1.29
CD28-203ENST00000458610 CLSPNQ9HAW4 1339 aa23.11■■□□□ 1.29
CD28-203ENST00000458610 NBPF1Q3BBV0 1214 aa23.1■■□□□ 1.29
CD28-203ENST00000458610 KIAA1210Q9ULL0 1709 aa23.1■■□□□ 1.29
CD28-203ENST00000458610 CDC42BPGQ6DT37 1551 aa23.1■■□□□ 1.29
CD28-203ENST00000458610 ESCO1Q5FWF5 840 aa23.09■■□□□ 1.29
CD28-203ENST00000458610 ORAI2Q96SN7 254 aa23.07■■□□□ 1.28
CD28-203ENST00000458610 JCADQ9P266 1359 aa23.05■■□□□ 1.28
CD28-203ENST00000458610 LRRC59Q96AG4 307 aaKnown RBP23.05■■□□□ 1.28
CD28-203ENST00000458610 TIMELESSQ9UNS1 1208 aa23.05■■□□□ 1.28
CD28-203ENST00000458610 EIF3AQ14152 1382 aaKnown RBP23.04■■□□□ 1.28
CD28-203ENST00000458610 NUTM2FA1L443 756 aa23.04■■□□□ 1.28
CD28-203ENST00000458610 MINK1Q8N4C8 1332 aaPredicted RBP23.04■■□□□ 1.28
CD28-203ENST00000458610 AHDC1Q5TGY3 1603 aaPredicted RBP23.04■■□□□ 1.28
CD28-203ENST00000458610 PHLPP1O60346 1717 aa23.03■■□□□ 1.28
CD28-203ENST00000458610 ROCK2O75116 1388 aaKnown RBP23.02■■□□□ 1.28
CD28-203ENST00000458610 CCER1Q8TC90 406 aaPredicted RBP23.02■■□□□ 1.28
CD28-203ENST00000458610 DISP3Q9P2K9 1392 aa23.01■■□□□ 1.27
CD28-203ENST00000458610 WASLO00401 505 aaPredicted RBP23.01■■□□□ 1.27
CD28-203ENST00000458610 HIRIP3Q9BW71 556 aaPredicted RBP23.01■■□□□ 1.27
CD28-203ENST00000458610 NPHP3Q7Z494 1330 aa23.01■■□□□ 1.27
CD28-203ENST00000458610 NBPF8Q3BBV2 869 aa23■■□□□ 1.27
CD28-203ENST00000458610 CENPJQ9HC77 1338 aaPredicted RBP22.99■■□□□ 1.27
CD28-203ENST00000458610 SPATA31A6Q5VVP1 1343 aa22.98■■□□□ 1.27
CD28-203ENST00000458610 ANKARQ7Z5J8 1434 aa22.98■■□□□ 1.27
CD28-203ENST00000458610 FOXO3O43524 673 aa22.97■■□□□ 1.27
CD28-203ENST00000458610 PHF8Q9UPP1 1060 aa22.97■■□□□ 1.27
CD28-203ENST00000458610 SOS2Q07890 1332 aaPredicted RBP22.97■■□□□ 1.27
CD28-203ENST00000458610 DDX17Q92841 729 aaKnown RBP22.96■■□□□ 1.27
CD28-203ENST00000458610 PHF23Q9BUL5 403 aaPredicted RBP22.96■■□□□ 1.27
CD28-203ENST00000458610 COL16A1Q07092 1604 aaPredicted RBP22.96■■□□□ 1.27
CD28-203ENST00000458610 ADGRB2O60241 1585 aa22.95■■□□□ 1.26
CD28-203ENST00000458610 CARD11Q9BXL7 1154 aa22.95■■□□□ 1.26
CD28-203ENST00000458610 FMN2Q9NZ56 1722 aa22.95■■□□□ 1.26
CD28-203ENST00000458610 PSME1Q06323 249 aa22.94■■□□□ 1.26
CD28-203ENST00000458610 CDK19Q9BWU1 502 aa22.94■■□□□ 1.26
CD28-203ENST00000458610 TRPM1Q7Z4N2 1603 aa22.93■■□□□ 1.26
CD28-203ENST00000458610 GPRASP1Q5JY77 1395 aa22.93■■□□□ 1.26
CD28-203ENST00000458610 ARHGEF28Q8N1W1 1705 aaKnown RBP22.93■■□□□ 1.26
CD28-203ENST00000458610 NHSL1Q5SYE7 1610 aa22.93■■□□□ 1.26
CD28-203ENST00000458610 MED1Q15648 1581 aaPredicted RBP22.9■■□□□ 1.26
CD28-203ENST00000458610 KRT28Q7Z3Y7 464 aa22.9■■□□□ 1.26
CD28-203ENST00000458610 NUDT16Q96DE0 195 aaKnown RBP22.9■■□□□ 1.26
CD28-203ENST00000458610 TULP4Q9NRJ4 1543 aa22.88■■□□□ 1.25
CD28-203ENST00000458610 SRPK2P78362 688 aaKnown RBP22.88■■□□□ 1.25
CD28-203ENST00000458610 MEX3CQ5U5Q3 659 aaKnown RBP22.88■■□□□ 1.25
CD28-203ENST00000458610 PMFBP1Q8TBY8 1022 aa22.88■■□□□ 1.25
CD28-203ENST00000458610 CCDC61Q9Y6R9 512 aa22.88■■□□□ 1.25
CD28-203ENST00000458610 KIF1AQ12756 1690 aa22.87■■□□□ 1.25
CD28-203ENST00000458610 RALGAPBQ86X10 1494 aa22.87■■□□□ 1.25
CD28-203ENST00000458610 EVC2Q86UK5 1308 aa22.86■■□□□ 1.25
CD28-203ENST00000458610 XPCQ01831 940 aaPredicted RBP22.86■■□□□ 1.25
CD28-203ENST00000458610 NGDNQ8NEJ9 315 aaKnown RBP22.86■■□□□ 1.25
CD28-203ENST00000458610 PNPLA6Q8IY17 1366 aa22.86■■□□□ 1.25
CD28-203ENST00000458610 PRR36Q9H6K5 1346 aa22.85■■□□□ 1.25
CD28-203ENST00000458610 NUTM2BA6NNL0 878 aaPredicted RBP22.85■■□□□ 1.25
CD28-203ENST00000458610 NUTM2EB1AL46 878 aaPredicted RBP22.85■■□□□ 1.25
CD28-203ENST00000458610 SLC24A1O60721 1099 aa22.85■■□□□ 1.25
CD28-203ENST00000458610 NUTM2AQ8IVF1 878 aaPredicted RBP22.85■■□□□ 1.25
CD28-203ENST00000458610 SHPRHQ149N8 1683 aa22.84■■□□□ 1.25
CD28-203ENST00000458610 PXDNQ92626 1479 aa22.83■■□□□ 1.25
CD28-203ENST00000458610 SPATA31A3Q5VYP0 1347 aa22.82■■□□□ 1.24
CD28-203ENST00000458610 SBNO1A3KN83 1393 aa22.8■■□□□ 1.24
CD28-203ENST00000458610 PLEKHG3A1L390 1219 aa22.8■■□□□ 1.24
CD28-203ENST00000458610 CABP2Q9NPB3 220 aa22.8■■□□□ 1.24
CD28-203ENST00000458610 USP32Q8NFA0 1604 aa22.79■■□□□ 1.24
CD28-203ENST00000458610 RGPD8O14715 1765 aaPredicted RBP22.78■■□□□ 1.24
CD28-203ENST00000458610 ATP7BP35670 1465 aa22.78■■□□□ 1.24
CD28-203ENST00000458610 SBNO2Q9Y2G9 1366 aa22.77■■□□□ 1.24
CD28-203ENST00000458610 LMOD2Q6P5Q4 547 aa22.77■■□□□ 1.24
CD28-203ENST00000458610 QRICH2Q9H0J4 1663 aa22.77■■□□□ 1.24
CD28-203ENST00000458610 ARHGEF10O15013 1369 aa22.76■■□□□ 1.23
CD28-203ENST00000458610 ZNF772Q68DY9 489 aaPredicted RBP22.75■■□□□ 1.23
CD28-203ENST00000458610 ACEP12821 1306 aa22.75■■□□□ 1.23
CD28-203ENST00000458610 TNS3Q68CZ2 1445 aa22.74■■□□□ 1.23
CD28-203ENST00000458610 HAP1P54257 671 aaPredicted RBP22.74■■□□□ 1.23
CD28-203ENST00000458610 LRP6O75581 1613 aa22.73■■□□□ 1.23
CD28-203ENST00000458610 PAK3O75914 559 aaPredicted RBP22.73■■□□□ 1.23
CD28-203ENST00000458610 ADAMTS2O95450 1211 aa22.73■■□□□ 1.23
CD28-203ENST00000458610 CABP1Q9NZU7 370 aa22.73■■□□□ 1.23
CD28-203ENST00000458610 ITSN1Q15811 1721 aa22.73■■□□□ 1.23
CD28-203ENST00000458610 POLR3AO14802 1390 aaPredicted RBP22.73■■□□□ 1.23
CD28-203ENST00000458610 ST20-MTHFSA0A0A6YYL1 179 aa22.72■■□□□ 1.23
CD28-203ENST00000458610 NGLY1Q96IV0 654 aa22.72■■□□□ 1.23
CD28-203ENST00000458610 PUS7Q96PZ0 661 aaKnown RBP22.72■■□□□ 1.23
CD28-203ENST00000458610 RGS17Q9UGC6 210 aaPredicted RBP22.72■■□□□ 1.23
CD28-203ENST00000458610 ATAD2Q6PL18 1390 aa22.72■■□□□ 1.23
CD28-203ENST00000458610 PPIP5K1Q6PFW1 1433 aa22.72■■□□□ 1.23
CD28-203ENST00000458610 C8orf37Q96NL8 207 aa22.7■■□□□ 1.22
CD28-203ENST00000458610 ZNF692Q9BU19 519 aaPredicted RBP22.7■■□□□ 1.22
CD28-203ENST00000458610 COL22A1Q8NFW1 1626 aaPredicted RBP22.69■■□□□ 1.22
CD28-203ENST00000458610 BRD4O60885 1362 aaPredicted RBP22.69■■□□□ 1.22
CD28-203ENST00000458610 USP47Q96K76 1375 aa22.68■■□□□ 1.22
CD28-203ENST00000458610 ILDR2Q71H61 639 aa22.68■■□□□ 1.22
CD28-203ENST00000458610 AFF2P51816 1311 aa22.66■■□□□ 1.22
CD28-203ENST00000458610 TMF1P82094 1093 aa22.65■■□□□ 1.22
CD28-203ENST00000458610 TESK2Q96S53 571 aa22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms