RNA–Protein interactions for RNA: ENST00000458038.5

CPNE1-220, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-220ENST00000458038 RBM6P78332 1123 aaKnown RBP32.09■■■□□ 2.73
CPNE1-220ENST00000458038 RGL3Q3MIN7 710 aa32.09■■■□□ 2.73
CPNE1-220ENST00000458038 NGLY1Q96IV0 654 aa32.08■■■□□ 2.73
CPNE1-220ENST00000458038 CDC42BPGQ6DT37 1551 aa32.07■■■□□ 2.72
CPNE1-220ENST00000458038 NPHP3Q7Z494 1330 aa32.06■■■□□ 2.72
CPNE1-220ENST00000458038 TECPR2O15040 1411 aa32.06■■■□□ 2.72
CPNE1-220ENST00000458038 IFT172Q9UG01 1749 aa32.05■■■□□ 2.72
CPNE1-220ENST00000458038 ADAMTS2O95450 1211 aa32.04■■■□□ 2.72
CPNE1-220ENST00000458038 LRPPRCP42704 1394 aaKnown RBP32.04■■■□□ 2.72
CPNE1-220ENST00000458038 ABCC11Q96J66 1382 aa32.04■■■□□ 2.72
CPNE1-220ENST00000458038 ESCO1Q5FWF5 840 aa32.03■■■□□ 2.72
CPNE1-220ENST00000458038 STK26Q9P289 416 aa32.01■■■□□ 2.71
CPNE1-220ENST00000458038 COL22A1Q8NFW1 1626 aaPredicted RBP31.99■■■□□ 2.71
CPNE1-220ENST00000458038 PIK3C2GO75747 1445 aa31.98■■■□□ 2.71
CPNE1-220ENST00000458038 KNDC1Q76NI1 1749 aa31.97■■■□□ 2.71
CPNE1-220ENST00000458038 WAPLQ7Z5K2 1190 aa31.97■■■□□ 2.71
CPNE1-220ENST00000458038 FNBP4Q8N3X1 1017 aaPredicted RBP31.96■■■□□ 2.71
CPNE1-220ENST00000458038 SIRT1Q96EB6 747 aa31.96■■■□□ 2.71
CPNE1-220ENST00000458038 USP21Q9UK80 565 aa31.95■■■□□ 2.71
CPNE1-220ENST00000458038 TMEM132EQ6IEE7 984 aa31.94■■■□□ 2.7
CPNE1-220ENST00000458038 TRPC5Q9UL62 973 aaPredicted RBP31.94■■■□□ 2.7
CPNE1-220ENST00000458038 RGS12O14924 1447 aa31.93■■■□□ 2.7
CPNE1-220ENST00000458038 PXDNQ92626 1479 aa31.93■■■□□ 2.7
CPNE1-220ENST00000458038 FOXO3O43524 673 aa31.93■■■□□ 2.7
CPNE1-220ENST00000458038 YTHDC2Q9H6S0 1430 aaKnown RBP31.92■■■□□ 2.7
CPNE1-220ENST00000458038 C14orf93Q9H972 538 aaKnown RBP31.9■■■□□ 2.7
CPNE1-220ENST00000458038 MYOM2P54296 1465 aa31.9■■■□□ 2.7
CPNE1-220ENST00000458038 PLEKHH1Q9ULM0 1364 aa31.86■■■□□ 2.69
CPNE1-220ENST00000458038 FMN2Q9NZ56 1722 aa31.86■■■□□ 2.69
CPNE1-220ENST00000458038 DHX57Q6P158 1386 aaKnown RBP31.85■■■□□ 2.69
CPNE1-220ENST00000458038 NRXN1Q9ULB1 1477 aa31.84■■■□□ 2.69
CPNE1-220ENST00000458038 MARF1Q9Y4F3 1742 aaKnown RBP31.84■■■□□ 2.69
CPNE1-220ENST00000458038 KIF1AQ12756 1690 aa31.84■■■□□ 2.69
CPNE1-220ENST00000458038 NUTM2FA1L443 756 aa31.84■■■□□ 2.69
CPNE1-220ENST00000458038 ATRNO75882 1429 aa31.83■■■□□ 2.69
CPNE1-220ENST00000458038 XPCQ01831 940 aaPredicted RBP31.83■■■□□ 2.69
CPNE1-220ENST00000458038 ATAD2Q6PL18 1390 aa31.81■■■□□ 2.68
CPNE1-220ENST00000458038 SPATA31A3Q5VYP0 1347 aa31.79■■■□□ 2.68
CPNE1-220ENST00000458038 CFAP70Q5T0N1 1121 aa31.78■■■□□ 2.68
CPNE1-220ENST00000458038 KRT28Q7Z3Y7 464 aa31.77■■■□□ 2.68
CPNE1-220ENST00000458038 BCL9LQ86UU0 1499 aa31.77■■■□□ 2.68
CPNE1-220ENST00000458038 PSME1Q06323 249 aa31.76■■■□□ 2.67
CPNE1-220ENST00000458038 RAB3GAP2Q9H2M9 1393 aa31.74■■■□□ 2.67
CPNE1-220ENST00000458038 PHF8Q9UPP1 1060 aa31.74■■■□□ 2.67
CPNE1-220ENST00000458038 RGPD8O14715 1765 aaPredicted RBP31.72■■■□□ 2.67
CPNE1-220ENST00000458038 PRAM1Q96QH2 718 aa31.72■■■□□ 2.67
CPNE1-220ENST00000458038 GJD4Q96KN9 370 aaPredicted RBP31.71■■■□□ 2.67
CPNE1-220ENST00000458038 TNKS1BP1Q9C0C2 1729 aaKnown RBP31.71■■■□□ 2.67
CPNE1-220ENST00000458038 DLC1Q96QB1 1528 aa31.7■■■□□ 2.67
CPNE1-220ENST00000458038 STAC3Q96MF2 364 aa31.7■■■□□ 2.67
CPNE1-220ENST00000458038 POGKQ9P215 609 aa31.69■■■□□ 2.66
CPNE1-220ENST00000458038 EP400Q96L91 3159 aa31.69■■■□□ 2.66
CPNE1-220ENST00000458038 UNC5CLQ8IV45 518 aa31.68■■■□□ 2.66
CPNE1-220ENST00000458038 CCDC125Q86Z20 511 aa31.67■■■□□ 2.66
CPNE1-220ENST00000458038 SBNO1A3KN83 1393 aa31.67■■■□□ 2.66
CPNE1-220ENST00000458038 TNS3Q68CZ2 1445 aa31.66■■■□□ 2.66
CPNE1-220ENST00000458038 SLIT2O94813 1529 aa31.66■■■□□ 2.66
CPNE1-220ENST00000458038 ANKARQ7Z5J8 1434 aa31.65■■■□□ 2.66
CPNE1-220ENST00000458038 HAP1P54257 671 aaPredicted RBP31.64■■■□□ 2.66
CPNE1-220ENST00000458038 SAFB2Q14151 953 aaKnown RBP eCLIP31.64■■■□□ 2.663e-13■□□□□ 9.1
CPNE1-220ENST00000458038 HRCP23327 699 aa31.63■■■□□ 2.65
CPNE1-220ENST00000458038 ARHGEF10O15013 1369 aa31.63■■■□□ 2.65
CPNE1-220ENST00000458038 USP32Q8NFA0 1604 aa31.63■■■□□ 2.65
CPNE1-220ENST00000458038 ADGRB2O60241 1585 aa31.6■■■□□ 2.65
CPNE1-220ENST00000458038 EIF3AQ14152 1382 aaKnown RBP31.6■■■□□ 2.65
CPNE1-220ENST00000458038 ADGRB1O14514 1584 aa31.6■■■□□ 2.65
CPNE1-220ENST00000458038 DCAF11Q8TEB1 546 aa31.57■■■□□ 2.64
CPNE1-220ENST00000458038 RALGAPBQ86X10 1494 aa31.57■■■□□ 2.64
CPNE1-220ENST00000458038 TRAK1Q9UPV9 953 aa31.56■■■□□ 2.64
CPNE1-220ENST00000458038 LMOD2Q6P5Q4 547 aa31.55■■■□□ 2.64
CPNE1-220ENST00000458038 KDM2AQ9Y2K7 1162 aa31.55■■■□□ 2.64
CPNE1-220ENST00000458038 NWD2Q9ULI1 1742 aa31.55■■■□□ 2.64
CPNE1-220ENST00000458038 PMFBP1Q8TBY8 1022 aa31.54■■■□□ 2.64
CPNE1-220ENST00000458038 SRCAPQ6ZRS2 3230 aa31.53■■■□□ 2.64
CPNE1-220ENST00000458038 GLI3P10071 1580 aa31.53■■■□□ 2.64
CPNE1-220ENST00000458038 VPS72Q15906 364 aa31.53■■■□□ 2.64
CPNE1-220ENST00000458038 CABLES1Q8TDN4 633 aa31.53■■■□□ 2.64
CPNE1-220ENST00000458038 ZRANB1Q9UGI0 708 aa31.51■■■□□ 2.63
CPNE1-220ENST00000458038 GPRASP1Q5JY77 1395 aa31.51■■■□□ 2.63
CPNE1-220ENST00000458038 HIRIP3Q9BW71 556 aaPredicted RBP31.49■■■□□ 2.63
CPNE1-220ENST00000458038 ABCA3Q99758 1704 aa31.49■■■□□ 2.63
CPNE1-220ENST00000458038 MINK1Q8N4C8 1332 aaPredicted RBP31.49■■■□□ 2.63
CPNE1-220ENST00000458038 WASLO00401 505 aaPredicted RBP31.48■■■□□ 2.63
CPNE1-220ENST00000458038 PLCH1Q4KWH8 1693 aa31.48■■■□□ 2.63
CPNE1-220ENST00000458038 ONECUT3O60422 494 aaPredicted RBP31.47■■■□□ 2.63
CPNE1-220ENST00000458038 TULP4Q9NRJ4 1543 aa31.47■■■□□ 2.63
CPNE1-220ENST00000458038 SEPT12Q8IYM1 358 aa31.45■■■□□ 2.63
CPNE1-220ENST00000458038 TRPM3Q9HCF6 1732 aaPredicted RBP31.45■■■□□ 2.63
CPNE1-220ENST00000458038 BRWD3Q6RI45 1802 aa31.45■■■□□ 2.62
CPNE1-220ENST00000458038 BLMP54132 1417 aaPredicted RBP31.44■■■□□ 2.62
CPNE1-220ENST00000458038 FAM83GA6ND36 823 aa31.44■■■□□ 2.62
CPNE1-220ENST00000458038 CCDC9Q9Y3X0 531 aaKnown RBP31.44■■■□□ 2.62
CPNE1-220ENST00000458038 PLEKHG5O94827 1062 aa31.43■■■□□ 2.62
CPNE1-220ENST00000458038 PRR36Q9H6K5 1346 aa31.43■■■□□ 2.62
CPNE1-220ENST00000458038 NGDNQ8NEJ9 315 aaKnown RBP31.42■■■□□ 2.62
CPNE1-220ENST00000458038 ALS2Q96Q42 1657 aa31.41■■■□□ 2.62
CPNE1-220ENST00000458038 SF3B2Q13435 895 aaKnown RBP31.38■■■□□ 2.61
CPNE1-220ENST00000458038 ITSN1Q15811 1721 aa31.36■■■□□ 2.61
CPNE1-220ENST00000458038 ARHGEF28Q8N1W1 1705 aaKnown RBP31.36■■■□□ 2.61
CPNE1-220ENST00000458038 KRT27Q7Z3Y8 459 aa31.36■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms