RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 HOOK3Q86VS8 718 aa6.25□□□□□ -1.41
CSMD3-204ENST00000455883 NINQ8N4C6 2090 aa6.25□□□□□ -1.41
CSMD3-204ENST00000455883 SETSIPP0DME0 302 aa6.24□□□□□ -1.41
CSMD3-204ENST00000455883 TPD52L1Q16890 204 aaPredicted RBP6.24□□□□□ -1.41
CSMD3-204ENST00000455883 HS1BP3Q53T59 392 aa6.24□□□□□ -1.41
CSMD3-204ENST00000455883 ZKSCAN2Q63HK3 967 aa6.24□□□□□ -1.41
CSMD3-204ENST00000455883 DNAAF4Q8WXU2 420 aa6.24□□□□□ -1.41
CSMD3-204ENST00000455883 CBFA2T2O43439 604 aa6.24□□□□□ -1.41
CSMD3-204ENST00000455883 TRIM29Q14134 588 aa6.24□□□□□ -1.41
CSMD3-204ENST00000455883 SRCIN1Q9C0H9 1055 aa6.24□□□□□ -1.41
CSMD3-204ENST00000455883 PYM1Q9BRP8 204 aaKnown RBP6.24□□□□□ -1.41
CSMD3-204ENST00000455883 WIZO95785 1651 aa6.24□□□□□ -1.41
CSMD3-204ENST00000455883 FYB1O15117 783 aa6.24□□□□□ -1.41
CSMD3-204ENST00000455883 CHMP3Q9Y3E7 222 aa6.24□□□□□ -1.41
CSMD3-204ENST00000455883 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.24□□□□□ -1.41
CSMD3-204ENST00000455883 V9GYY5 206 aaPredicted RBP6.24□□□□□ -1.41
CSMD3-204ENST00000455883 TRIM21P19474 475 aaKnown RBP6.24□□□□□ -1.41
CSMD3-204ENST00000455883 PAXIP1Q6ZW49 1069 aaPredicted RBP6.23□□□□□ -1.41
CSMD3-204ENST00000455883 TXLNAP40222 546 aa6.23□□□□□ -1.41
CSMD3-204ENST00000455883 OLFM4Q6UX06 510 aa6.23□□□□□ -1.41
CSMD3-204ENST00000455883 NUMA1Q14980 2115 aa6.23□□□□□ -1.41
CSMD3-204ENST00000455883 SLC26A8Q96RN1 970 aa6.23□□□□□ -1.41
CSMD3-204ENST00000455883 PODXL2Q9NZ53 605 aa6.23□□□□□ -1.41
CSMD3-204ENST00000455883 EHBP1Q8NDI1 1231 aa6.23□□□□□ -1.41
CSMD3-204ENST00000455883 FRAT1Q92837 279 aaPredicted RBP6.23□□□□□ -1.41
CSMD3-204ENST00000455883 SOGA1O94964 1423 aa6.23□□□□□ -1.41
CSMD3-204ENST00000455883 CCDC83Q8IWF9 413 aa6.23□□□□□ -1.41
CSMD3-204ENST00000455883 RNF214Q8ND24 703 aa6.23□□□□□ -1.41
CSMD3-204ENST00000455883 JAKMIP3Q5VZ66 844 aa6.23□□□□□ -1.41
CSMD3-204ENST00000455883 IVLP07476 585 aa6.23□□□□□ -1.41
CSMD3-204ENST00000455883 STIM1Q13586 685 aa6.23□□□□□ -1.41
CSMD3-204ENST00000455883 PDE3AQ14432 1141 aa6.23□□□□□ -1.41
CSMD3-204ENST00000455883 CFAP65Q6ZU64 1925 aaKnown RBP6.23□□□□□ -1.41
CSMD3-204ENST00000455883 TOP2BQ02880 1626 aa6.23□□□□□ -1.41
CSMD3-204ENST00000455883 SASS6Q6UVJ0 657 aa6.22□□□□□ -1.41
CSMD3-204ENST00000455883 RASSF8Q8NHQ8 419 aa6.22□□□□□ -1.41
CSMD3-204ENST00000455883 PPP6R1Q9UPN7 881 aa6.22□□□□□ -1.41
CSMD3-204ENST00000455883 KINO60870 393 aaKnown RBP6.22□□□□□ -1.41
CSMD3-204ENST00000455883 CCDC192P0DO97 292 aa6.22□□□□□ -1.41
CSMD3-204ENST00000455883 CHGAP10645 457 aaKnown RBP6.22□□□□□ -1.41
CSMD3-204ENST00000455883 CNPY4Q8N129 248 aa6.22□□□□□ -1.41
CSMD3-204ENST00000455883 TRDNQ13061 729 aa6.22□□□□□ -1.41
CSMD3-204ENST00000455883 CFAP45Q9UL16 551 aa6.22□□□□□ -1.41
CSMD3-204ENST00000455883 SSR1P43307 286 aaKnown RBP6.22□□□□□ -1.41
CSMD3-204ENST00000455883 CCDC112Q8NEF3 446 aa6.22□□□□□ -1.41
CSMD3-204ENST00000455883 IMMTQ16891 758 aaKnown RBP6.22□□□□□ -1.41
CSMD3-204ENST00000455883 HOMER1Q86YM7 354 aa6.22□□□□□ -1.41
CSMD3-204ENST00000455883 NESP48681 1621 aa6.22□□□□□ -1.41
CSMD3-204ENST00000455883 NCAPD3P42695 1498 aa6.22□□□□□ -1.41
CSMD3-204ENST00000455883 DZIP1LQ8IYY4 767 aaKnown RBP6.22□□□□□ -1.41
CSMD3-204ENST00000455883 CDKL5O76039 1030 aa6.21□□□□□ -1.41
CSMD3-204ENST00000455883 SART3Q15020 963 aaKnown RBP6.21□□□□□ -1.41
CSMD3-204ENST00000455883 ITPRIPQ8IWB1 547 aa6.21□□□□□ -1.41
CSMD3-204ENST00000455883 ERC1Q8IUD2 1116 aa6.21□□□□□ -1.42
CSMD3-204ENST00000455883 ZNF396Q96N95 335 aaPredicted RBP6.21□□□□□ -1.42
CSMD3-204ENST00000455883 ZMYM3Q14202 1370 aa6.21□□□□□ -1.42
CSMD3-204ENST00000455883 TTLL5Q6EMB2 1281 aa6.21□□□□□ -1.42
CSMD3-204ENST00000455883 PRIMPOLQ96LW4 560 aa6.21□□□□□ -1.42
CSMD3-204ENST00000455883 PDCL3Q9H2J4 239 aa6.21□□□□□ -1.42
CSMD3-204ENST00000455883 SETD1BQ9UPS6 1966 aaKnown RBP6.21□□□□□ -1.42
CSMD3-204ENST00000455883 CTAGE5O15320 804 aa6.21□□□□□ -1.42
CSMD3-204ENST00000455883 PPM1EQ8WY54 764 aa6.21□□□□□ -1.42
CSMD3-204ENST00000455883 EVC2Q86UK5 1308 aa6.21□□□□□ -1.42
CSMD3-204ENST00000455883 USP47Q96K76 1375 aa6.21□□□□□ -1.42
CSMD3-204ENST00000455883 FILIP1LQ4L180 1135 aa6.2□□□□□ -1.42
CSMD3-204ENST00000455883 HMGXB3Q12766 1538 aa6.2□□□□□ -1.42
CSMD3-204ENST00000455883 AXDND1Q5T1B0 1012 aaPredicted RBP6.2□□□□□ -1.42
CSMD3-204ENST00000455883 ADGBQ8N7X0 1667 aa6.2□□□□□ -1.42
CSMD3-204ENST00000455883 AQRO60306 1485 aaKnown RBP eCLIP6.2□□□□□ -1.42
CSMD3-204ENST00000455883 KAT6AQ92794 2004 aa6.2□□□□□ -1.42
CSMD3-204ENST00000455883 RRP1P56182 461 aaKnown RBP6.2□□□□□ -1.42
CSMD3-204ENST00000455883 SRRTQ9BXP5 876 aaKnown RBP6.2□□□□□ -1.42
CSMD3-204ENST00000455883 TCEAL9Q9UHQ7 104 aa6.2□□□□□ -1.42
CSMD3-204ENST00000455883 DDX58O95786 925 aaKnown RBP6.2□□□□□ -1.42
CSMD3-204ENST00000455883 B4GALNT3Q6L9W6 998 aa6.2□□□□□ -1.42
CSMD3-204ENST00000455883 KIAA1328Q86T90 577 aa6.2□□□□□ -1.42
CSMD3-204ENST00000455883 WDR33Q9C0J8 1336 aaKnown RBP6.19□□□□□ -1.42
CSMD3-204ENST00000455883 MYH6P13533 1939 aa6.19□□□□□ -1.42
CSMD3-204ENST00000455883 DYNC1I1O14576 645 aa6.19□□□□□ -1.42
CSMD3-204ENST00000455883 EIF4G1Q04637 1599 aaKnown RBP6.19□□□□□ -1.42
CSMD3-204ENST00000455883 CPLX1O14810 134 aa6.19□□□□□ -1.42
CSMD3-204ENST00000455883 NPHP1O15259 732 aa6.19□□□□□ -1.42
CSMD3-204ENST00000455883 BBXQ8WY36 941 aaPredicted RBP6.19□□□□□ -1.42
CSMD3-204ENST00000455883 KIF1BO60333 1816 aa6.19□□□□□ -1.42
CSMD3-204ENST00000455883 ATRXP46100 2492 aa6.19□□□□□ -1.42
CSMD3-204ENST00000455883 GSDMDP57764 484 aa6.19□□□□□ -1.42
CSMD3-204ENST00000455883 SNAPC4Q5SXM2 1469 aa6.19□□□□□ -1.42
CSMD3-204ENST00000455883 CT47A1Q5JQC4 288 aaPredicted RBP6.19□□□□□ -1.42
CSMD3-204ENST00000455883 CEP128Q6ZU80 1094 aa6.19□□□□□ -1.42
CSMD3-204ENST00000455883 FAM114A2Q9NRY5 505 aa6.19□□□□□ -1.42
CSMD3-204ENST00000455883 TERF1P54274 439 aa6.19□□□□□ -1.42
CSMD3-204ENST00000455883 KRT32Q14532 448 aa6.19□□□□□ -1.42
CSMD3-204ENST00000455883 CFAP57Q96MR6 1250 aa6.19□□□□□ -1.42
CSMD3-204ENST00000455883 ZSCAN12O43309 604 aa6.19□□□□□ -1.42
CSMD3-204ENST00000455883 TIAM1Q13009 1591 aa6.19□□□□□ -1.42
CSMD3-204ENST00000455883 SMC2O95347 1197 aa6.18□□□□□ -1.42
CSMD3-204ENST00000455883 GCC1Q96CN9 775 aa6.18□□□□□ -1.42
CSMD3-204ENST00000455883 CASKIN1Q8WXD9 1431 aa6.18□□□□□ -1.42
CSMD3-204ENST00000455883 ODF2Q5BJF6 829 aa6.18□□□□□ -1.42
CSMD3-204ENST00000455883 KDM2AQ9Y2K7 1162 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms