RNA–Protein interactions for RNA: ENST00000455554.2

LINC02540-201, Transcript of long intergenic non-protein coding RNA 2540, humanhuman

TSL 3 BASIC

Gene LINC02540, Length 570 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC02540-201ENST00000455554 TESPA1A2RU30 521 aaPredicted RBP6.94□□□□□ -1.3
LINC02540-201ENST00000455554 SMCPP49901 116 aaPredicted RBP6.94□□□□□ -1.3
LINC02540-201ENST00000455554 SMYD5Q6GMV2 418 aa6.94□□□□□ -1.3
LINC02540-201ENST00000455554 SULF1Q8IWU6 871 aa6.94□□□□□ -1.3
LINC02540-201ENST00000455554 HLA-CQ95604 372 aa6.94□□□□□ -1.3
LINC02540-201ENST00000455554 MRGPRX2Q96LB1 330 aa6.93□□□□□ -1.3
LINC02540-201ENST00000455554 ATP13A2Q9NQ11 1180 aa6.93□□□□□ -1.3
LINC02540-201ENST00000455554 TTC24A2A3L6 582 aaPredicted RBP6.92□□□□□ -1.3
LINC02540-201ENST00000455554 ZBTB24O43167 697 aaPredicted RBP6.92□□□□□ -1.3
LINC02540-201ENST00000455554 MSS51Q4VC12 460 aa6.92□□□□□ -1.3
LINC02540-201ENST00000455554 HPS1Q92902 700 aa6.92□□□□□ -1.3
LINC02540-201ENST00000455554 WNT7AO00755 349 aa6.91□□□□□ -1.3
LINC02540-201ENST00000455554 WIPF1O43516 503 aa6.91□□□□□ -1.3
LINC02540-201ENST00000455554 TRIM32Q13049 653 aa6.91□□□□□ -1.3
LINC02540-201ENST00000455554 SKOR1P84550 965 aa6.9□□□□□ -1.3
LINC02540-201ENST00000455554 GRIPAP1Q4V328 841 aa6.9□□□□□ -1.3
LINC02540-201ENST00000455554 SNIP1Q8TAD8 396 aaKnown RBP6.89□□□□□ -1.31
LINC02540-201ENST00000455554 MMP16P51512 607 aa6.88□□□□□ -1.31
LINC02540-201ENST00000455554 Q3C1V9 767 aa6.88□□□□□ -1.31
LINC02540-201ENST00000455554 TERTO14746 1132 aaKnown RBP6.87□□□□□ -1.31
LINC02540-201ENST00000455554 TRIM47Q96LD4 638 aa6.87□□□□□ -1.31
LINC02540-201ENST00000455554 LORP23490 312 aaPredicted RBP6.86□□□□□ -1.31
LINC02540-201ENST00000455554 GUCA2AQ02747 115 aa6.86□□□□□ -1.31
LINC02540-201ENST00000455554 STK17AQ9UEE5 414 aa6.86□□□□□ -1.31
LINC02540-201ENST00000455554 DXOO77932 396 aaKnown RBP6.85□□□□□ -1.31
LINC02540-201ENST00000455554 CD46P15529 392 aa6.85□□□□□ -1.31
LINC02540-201ENST00000455554 GPIHBP1Q8IV16 184 aa6.84□□□□□ -1.31
LINC02540-201ENST00000455554 SYMPKQ92797 1274 aaKnown RBP6.84□□□□□ -1.31
LINC02540-201ENST00000455554 REPIN1Q9BWE0 567 aaKnown RBP6.84□□□□□ -1.31
LINC02540-201ENST00000455554 INSM1Q01101 510 aaPredicted RBP6.83□□□□□ -1.32
LINC02540-201ENST00000455554 RC3H1Q5TC82 1133 aaKnown RBP6.83□□□□□ -1.32
LINC02540-201ENST00000455554 CCDC24Q8N4L8 307 aa6.83□□□□□ -1.32
LINC02540-201ENST00000455554 USB1Q9BQ65 265 aaKnown RBP6.83□□□□□ -1.32
LINC02540-201ENST00000455554 SENP2Q9HC62 589 aa6.83□□□□□ -1.32
LINC02540-201ENST00000455554 KDM4AO75164 1064 aa6.82□□□□□ -1.32
LINC02540-201ENST00000455554 BMP1P13497 986 aa6.82□□□□□ -1.32
LINC02540-201ENST00000455554 VEGFBP49765 207 aa6.82□□□□□ -1.32
LINC02540-201ENST00000455554 PTCRAQ6ISU1 281 aaPredicted RBP6.82□□□□□ -1.32
LINC02540-201ENST00000455554 TRIM46Q7Z4K8 759 aa6.82□□□□□ -1.32
LINC02540-201ENST00000455554 KIFC2Q96AC6 838 aa6.8□□□□□ -1.32
LINC02540-201ENST00000455554 SIAH2O43255 324 aa6.79□□□□□ -1.32
LINC02540-201ENST00000455554 ALDH1A1P00352 501 aa6.79□□□□□ -1.32
LINC02540-201ENST00000455554 GMPRP36959 345 aa6.79□□□□□ -1.32
LINC02540-201ENST00000455554 WNT7BP56706 349 aa6.79□□□□□ -1.32
LINC02540-201ENST00000455554 USP46P62068 366 aa6.79□□□□□ -1.32
LINC02540-201ENST00000455554 HOXA2O43364 376 aa6.78□□□□□ -1.32
LINC02540-201ENST00000455554 MDM2Q00987 491 aaPredicted RBP6.78□□□□□ -1.32
LINC02540-201ENST00000455554 MAP2K5Q13163 448 aa6.78□□□□□ -1.32
LINC02540-201ENST00000455554 ERBB4Q15303 1308 aa6.77□□□□□ -1.32
LINC02540-201ENST00000455554 JUNDP17535 347 aa6.75□□□□□ -1.33
LINC02540-201ENST00000455554 NXF1Q9UBU9 619 aaKnown RBP6.75□□□□□ -1.33
LINC02540-201ENST00000455554 IRF6O14896 467 aa6.74□□□□□ -1.33
LINC02540-201ENST00000455554 SH3BP2P78314 561 aa6.74□□□□□ -1.33
LINC02540-201ENST00000455554 PLCB2Q00722 1185 aa6.74□□□□□ -1.33
LINC02540-201ENST00000455554 PCDHGC3Q9UN70 934 aa6.74□□□□□ -1.33
LINC02540-201ENST00000455554 SLC16A10Q8TF71 515 aa6.73□□□□□ -1.33
LINC02540-201ENST00000455554 TLL2Q9Y6L7 1015 aa6.73□□□□□ -1.33
LINC02540-201ENST00000455554 SOBPA7XYQ1 873 aa6.72□□□□□ -1.33
LINC02540-201ENST00000455554 CAPN5O15484 640 aaPredicted RBP6.72□□□□□ -1.33
LINC02540-201ENST00000455554 EHBP1Q8NDI1 1231 aa6.72□□□□□ -1.33
LINC02540-201ENST00000455554 NUDT12Q9BQG2 462 aa6.72□□□□□ -1.33
LINC02540-201ENST00000455554 MINK1Q8N4C8 1332 aaPredicted RBP6.72□□□□□ -1.33
LINC02540-201ENST00000455554 LOC100996750A0A140TA64 210 aa6.71□□□□□ -1.34
LINC02540-201ENST00000455554 H3BM21 787 aa6.71□□□□□ -1.34
LINC02540-201ENST00000455554 RETREG3Q86VR2 466 aa6.71□□□□□ -1.34
LINC02540-201ENST00000455554 KRTAP4-6Q9BYQ5 205 aa6.71□□□□□ -1.34
LINC02540-201ENST00000455554 FAM181BA6NEQ2 426 aa6.7□□□□□ -1.34
LINC02540-201ENST00000455554 TULP1O00294 542 aaPredicted RBP6.7□□□□□ -1.34
LINC02540-201ENST00000455554 LINC01559Q495D7 138 aa6.7□□□□□ -1.34
LINC02540-201ENST00000455554 ZSCAN1Q8NBB4 408 aa6.7□□□□□ -1.34
LINC02540-201ENST00000455554 CCDC102AQ96A19 550 aa6.7□□□□□ -1.34
LINC02540-201ENST00000455554 ZFP42Q96MM3 310 aa6.7□□□□□ -1.34
LINC02540-201ENST00000455554 GPCPD1Q9NPB8 672 aa6.7□□□□□ -1.34
LINC02540-201ENST00000455554 FAM217BQ9NTX9 383 aaPredicted RBP6.7□□□□□ -1.34
LINC02540-201ENST00000455554 WASF2Q9Y6W5 498 aa6.7□□□□□ -1.34
LINC02540-201ENST00000455554 CLCN1P35523 988 aa6.69□□□□□ -1.34
LINC02540-201ENST00000455554 NUTM1Q86Y26 1132 aa6.69□□□□□ -1.34
LINC02540-201ENST00000455554 KDM2AQ9Y2K7 1162 aa6.69□□□□□ -1.34
LINC02540-201ENST00000455554 NPAS3Q8IXF0 933 aa6.68□□□□□ -1.34
LINC02540-201ENST00000455554 BAP1Q92560 729 aa6.68□□□□□ -1.34
LINC02540-201ENST00000455554 IRF7Q92985 503 aa6.68□□□□□ -1.34
LINC02540-201ENST00000455554 CCNYL3P0C7X3 344 aa6.67□□□□□ -1.34
LINC02540-201ENST00000455554 MS4A1P11836 297 aa6.67□□□□□ -1.34
LINC02540-201ENST00000455554 NDUFV2P19404 249 aa6.67□□□□□ -1.34
LINC02540-201ENST00000455554 UNC93B1Q9H1C4 597 aa6.67□□□□□ -1.34
LINC02540-201ENST00000455554 C6orf229H3BNL8 230 aa6.66□□□□□ -1.34
LINC02540-201ENST00000455554 FDX1P10109 184 aa6.66□□□□□ -1.34
LINC02540-201ENST00000455554 KRI1Q8N9T8 703 aaKnown RBP6.66□□□□□ -1.34
LINC02540-201ENST00000455554 NNTQ13423 1086 aa6.65□□□□□ -1.34
LINC02540-201ENST00000455554 PTPRNQ16849 979 aa6.65□□□□□ -1.34
LINC02540-201ENST00000455554 PURBQ96QR8 312 aaKnown RBP6.65□□□□□ -1.34
LINC02540-201ENST00000455554 TIMP2P16035 220 aa6.64□□□□□ -1.35
LINC02540-201ENST00000455554 KLF16Q9BXK1 252 aaPredicted RBP6.64□□□□□ -1.35
LINC02540-201ENST00000455554 MOXD2PA6NHM9 499 aa6.63□□□□□ -1.35
LINC02540-201ENST00000455554 HAP1P54257 671 aaPredicted RBP6.63□□□□□ -1.35
LINC02540-201ENST00000455554 MRPL14Q6P1L8 145 aaKnown RBP6.63□□□□□ -1.35
LINC02540-201ENST00000455554 SPIRE2Q8WWL2 714 aa6.63□□□□□ -1.35
LINC02540-201ENST00000455554 EVA1BQ9NVM1 165 aa6.63□□□□□ -1.35
LINC02540-201ENST00000455554 PLEKHG3A1L390 1219 aa6.62□□□□□ -1.35
LINC02540-201ENST00000455554 GSK3AP49840 483 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms