RNA–Protein interactions for RNA: ENST00000455111.1

GPC1-206, Transcript of glypican 1, humanhuman

TSL 3

Gene GPC1, Length 841 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-206ENST00000455111 TMEM132EQ6IEE7 984 aa24■■□□□ 1.43
GPC1-206ENST00000455111 WAPLQ7Z5K2 1190 aa24■■□□□ 1.43
GPC1-206ENST00000455111 ANKRD30BQ9BXX2 1392 aa24■■□□□ 1.43
GPC1-206ENST00000455111 FMN2Q9NZ56 1722 aa23.99■■□□□ 1.43
GPC1-206ENST00000455111 LRPPRCP42704 1394 aaKnown RBP23.99■■□□□ 1.43
GPC1-206ENST00000455111 ZNF772Q68DY9 489 aaPredicted RBP23.98■■□□□ 1.43
GPC1-206ENST00000455111 AFF2P51816 1311 aa23.98■■□□□ 1.43
GPC1-206ENST00000455111 RAB3GAP2Q9H2M9 1393 aa23.98■■□□□ 1.43
GPC1-206ENST00000455111 PXDNQ92626 1479 aa23.98■■□□□ 1.43
GPC1-206ENST00000455111 RGPD8O14715 1765 aaPredicted RBP23.96■■□□□ 1.43
GPC1-206ENST00000455111 ABCC11Q96J66 1382 aa23.96■■□□□ 1.43
GPC1-206ENST00000455111 STK26Q9P289 416 aa23.96■■□□□ 1.43
GPC1-206ENST00000455111 MYOM2P54296 1465 aa23.94■■□□□ 1.42
GPC1-206ENST00000455111 YTHDC2Q9H6S0 1430 aaKnown RBP23.94■■□□□ 1.42
GPC1-206ENST00000455111 MARF1Q9Y4F3 1742 aaKnown RBP23.91■■□□□ 1.42
GPC1-206ENST00000455111 C8orf37Q96NL8 207 aa23.91■■□□□ 1.42
GPC1-206ENST00000455111 CDK12Q9NYV4 1490 aaPredicted RBP23.91■■□□□ 1.42
GPC1-206ENST00000455111 C14orf93Q9H972 538 aaKnown RBP23.9■■□□□ 1.42
GPC1-206ENST00000455111 NUTM2FA1L443 756 aa23.89■■□□□ 1.41
GPC1-206ENST00000455111 CFAP70Q5T0N1 1121 aa23.89■■□□□ 1.41
GPC1-206ENST00000455111 RGS12O14924 1447 aa23.89■■□□□ 1.41
GPC1-206ENST00000455111 ADGRB1O14514 1584 aa23.88■■□□□ 1.41
GPC1-206ENST00000455111 RXRBP28702 533 aa23.88■■□□□ 1.41
GPC1-206ENST00000455111 ADAMTS2O95450 1211 aa23.87■■□□□ 1.41
GPC1-206ENST00000455111 ESCO1Q5FWF5 840 aa23.87■■□□□ 1.41
GPC1-206ENST00000455111 UPF1Q92900 1129 aaKnown RBP eCLIP23.87■■□□□ 1.41
GPC1-206ENST00000455111 USP32Q8NFA0 1604 aa23.87■■□□□ 1.41
GPC1-206ENST00000455111 XPCQ01831 940 aaPredicted RBP23.86■■□□□ 1.41
GPC1-206ENST00000455111 KIF1AQ12756 1690 aa23.85■■□□□ 1.41
GPC1-206ENST00000455111 FOXO3O43524 673 aa23.84■■□□□ 1.41
GPC1-206ENST00000455111 QTRT2Q9H974 415 aaKnown RBP23.83■■□□□ 1.41
GPC1-206ENST00000455111 SIRT1Q96EB6 747 aa23.82■■□□□ 1.4
GPC1-206ENST00000455111 NPHP3Q7Z494 1330 aa23.82■■□□□ 1.4
GPC1-206ENST00000455111 DLC1Q96QB1 1528 aa23.81■■□□□ 1.4
GPC1-206ENST00000455111 FNBP4Q8N3X1 1017 aaPredicted RBP23.79■■□□□ 1.4
GPC1-206ENST00000455111 NGLY1Q96IV0 654 aa23.79■■□□□ 1.4
GPC1-206ENST00000455111 BCL9LQ86UU0 1499 aa23.79■■□□□ 1.4
GPC1-206ENST00000455111 ADGRB2O60241 1585 aa23.78■■□□□ 1.4
GPC1-206ENST00000455111 ATRNO75882 1429 aa23.78■■□□□ 1.4
GPC1-206ENST00000455111 RBM6P78332 1123 aaKnown RBP23.78■■□□□ 1.4
GPC1-206ENST00000455111 ABCA3Q99758 1704 aa23.78■■□□□ 1.4
GPC1-206ENST00000455111 ACIN1Q9UKV3 1341 aaKnown RBP23.77■■□□□ 1.4
GPC1-206ENST00000455111 DHX57Q6P158 1386 aaKnown RBP23.76■■□□□ 1.39
GPC1-206ENST00000455111 PRAM1Q96QH2 718 aa23.75■■□□□ 1.39
GPC1-206ENST00000455111 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.75■■□□□ 1.39
GPC1-206ENST00000455111 USP21Q9UK80 565 aa23.74■■□□□ 1.39
GPC1-206ENST00000455111 SPATA31A3Q5VYP0 1347 aa23.74■■□□□ 1.39
GPC1-206ENST00000455111 SAFB2Q14151 953 aaKnown RBP eCLIP23.73■■□□□ 1.39
GPC1-206ENST00000455111 TRPM3Q9HCF6 1732 aaPredicted RBP23.73■■□□□ 1.39
GPC1-206ENST00000455111 ARHGEF28Q8N1W1 1705 aaKnown RBP23.72■■□□□ 1.39
GPC1-206ENST00000455111 GLI3P10071 1580 aa23.69■■□□□ 1.38
GPC1-206ENST00000455111 SLIT2O94813 1529 aa23.69■■□□□ 1.38
GPC1-206ENST00000455111 KRT28Q7Z3Y7 464 aa23.69■■□□□ 1.38
GPC1-206ENST00000455111 PHF8Q9UPP1 1060 aa23.69■■□□□ 1.38
GPC1-206ENST00000455111 TRPC5Q9UL62 973 aaPredicted RBP23.68■■□□□ 1.38
GPC1-206ENST00000455111 TNS3Q68CZ2 1445 aa23.67■■□□□ 1.38
GPC1-206ENST00000455111 PLCH1Q4KWH8 1693 aa23.67■■□□□ 1.38
GPC1-206ENST00000455111 PRR36Q9H6K5 1346 aa23.67■■□□□ 1.38
GPC1-206ENST00000455111 HRCP23327 699 aa23.67■■□□□ 1.38
GPC1-206ENST00000455111 DCAF11Q8TEB1 546 aa23.67■■□□□ 1.38
GPC1-206ENST00000455111 TRAK1Q9UPV9 953 aa23.67■■□□□ 1.38
GPC1-206ENST00000455111 KDM2AQ9Y2K7 1162 aa23.67■■□□□ 1.38
GPC1-206ENST00000455111 ALS2Q96Q42 1657 aa23.67■■□□□ 1.38
GPC1-206ENST00000455111 CRYBG1Q9Y4K1 1723 aa23.65■■□□□ 1.38
GPC1-206ENST00000455111 ANKARQ7Z5J8 1434 aa23.65■■□□□ 1.38
GPC1-206ENST00000455111 CABLES1Q8TDN4 633 aa23.64■■□□□ 1.37
GPC1-206ENST00000455111 HIRIP3Q9BW71 556 aaPredicted RBP23.64■■□□□ 1.37
GPC1-206ENST00000455111 BRWD3Q6RI45 1802 aa23.63■■□□□ 1.37
GPC1-206ENST00000455111 TULP4Q9NRJ4 1543 aa23.63■■□□□ 1.37
GPC1-206ENST00000455111 EP400Q96L91 3159 aa23.62■■□□□ 1.37
GPC1-206ENST00000455111 PMFBP1Q8TBY8 1022 aa23.62■■□□□ 1.37
GPC1-206ENST00000455111 SBNO1A3KN83 1393 aa23.62■■□□□ 1.37
GPC1-206ENST00000455111 POGKQ9P215 609 aa23.61■■□□□ 1.37
GPC1-206ENST00000455111 RALGAPBQ86X10 1494 aa23.61■■□□□ 1.37
GPC1-206ENST00000455111 MINK1Q8N4C8 1332 aaPredicted RBP23.6■■□□□ 1.37
GPC1-206ENST00000455111 NRAPQ86VF7 1730 aa23.6■■□□□ 1.37
GPC1-206ENST00000455111 NWD2Q9ULI1 1742 aa23.6■■□□□ 1.37
GPC1-206ENST00000455111 GJD4Q96KN9 370 aaPredicted RBP23.58■■□□□ 1.37
GPC1-206ENST00000455111 KIAA1210Q9ULL0 1709 aa23.58■■□□□ 1.37
GPC1-206ENST00000455111 ATP7BP35670 1465 aa23.56■■□□□ 1.36
GPC1-206ENST00000455111 UNC5CLQ8IV45 518 aa23.56■■□□□ 1.36
GPC1-206ENST00000455111 TOPAZ1Q8N9V7 1692 aa23.56■■□□□ 1.36
GPC1-206ENST00000455111 ATAD2Q6PL18 1390 aa23.55■■□□□ 1.36
GPC1-206ENST00000455111 WASLO00401 505 aaPredicted RBP23.55■■□□□ 1.36
GPC1-206ENST00000455111 PLEKHG5O94827 1062 aa23.55■■□□□ 1.36
GPC1-206ENST00000455111 ITSN1Q15811 1721 aa23.53■■□□□ 1.36
GPC1-206ENST00000455111 PSME1Q06323 249 aa23.53■■□□□ 1.36
GPC1-206ENST00000455111 STAC3Q96MF2 364 aa23.51■■□□□ 1.35
GPC1-206ENST00000455111 ARHGEF10O15013 1369 aa23.51■■□□□ 1.35
GPC1-206ENST00000455111 FAM83GA6ND36 823 aa23.5■■□□□ 1.35
GPC1-206ENST00000455111 NBPF1Q3BBV0 1214 aa23.49■■□□□ 1.35
GPC1-206ENST00000455111 PHRF1Q9P1Y6 1649 aaKnown RBP23.48■■□□□ 1.35
GPC1-206ENST00000455111 LMOD2Q6P5Q4 547 aa23.48■■□□□ 1.35
GPC1-206ENST00000455111 COL14A1Q05707 1796 aaKnown RBP23.47■■□□□ 1.35
GPC1-206ENST00000455111 VPS72Q15906 364 aa23.46■■□□□ 1.35
GPC1-206ENST00000455111 EIF3AQ14152 1382 aaKnown RBP23.45■■□□□ 1.34
GPC1-206ENST00000455111 NUDT16Q96DE0 195 aaKnown RBP23.44■■□□□ 1.34
GPC1-206ENST00000455111 ONECUT3O60422 494 aaPredicted RBP23.43■■□□□ 1.34
GPC1-206ENST00000455111 GPRASP1Q5JY77 1395 aa23.41■■□□□ 1.34
GPC1-206ENST00000455111 HAP1P54257 671 aaPredicted RBP23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms