RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-208ENST00000452047 STK26Q9P289 416 aa18.39■□□□□ 0.53
CPSF4-208ENST00000452047 PLEKHH1Q9ULM0 1364 aa18.39■□□□□ 0.53
CPSF4-208ENST00000452047 WAPLQ7Z5K2 1190 aa18.37■□□□□ 0.53
CPSF4-208ENST00000452047 ORAI2Q96SN7 254 aa18.37■□□□□ 0.53
CPSF4-208ENST00000452047 FMN2Q9NZ56 1722 aa18.37■□□□□ 0.53
CPSF4-208ENST00000452047 CFAP70Q5T0N1 1121 aa18.36■□□□□ 0.53
CPSF4-208ENST00000452047 PNPLA6Q8IY17 1366 aa18.36■□□□□ 0.53
CPSF4-208ENST00000452047 LRRC59Q96AG4 307 aaKnown RBP18.36■□□□□ 0.53
CPSF4-208ENST00000452047 ADGRB1O14514 1584 aa18.35■□□□□ 0.53
CPSF4-208ENST00000452047 SOS2Q07890 1332 aaPredicted RBP18.34■□□□□ 0.53
CPSF4-208ENST00000452047 SIRT1Q96EB6 747 aa18.33■□□□□ 0.52
CPSF4-208ENST00000452047 DLC1Q96QB1 1528 aa18.33■□□□□ 0.52
CPSF4-208ENST00000452047 DHX57Q6P158 1386 aaKnown RBP18.32■□□□□ 0.52
CPSF4-208ENST00000452047 MEX3CQ5U5Q3 659 aaKnown RBP18.32■□□□□ 0.52
CPSF4-208ENST00000452047 PXDNQ92626 1479 aa18.32■□□□□ 0.52
CPSF4-208ENST00000452047 COL22A1Q8NFW1 1626 aaPredicted RBP18.31■□□□□ 0.52
CPSF4-208ENST00000452047 NUTM2BA6NNL0 878 aaPredicted RBP18.3■□□□□ 0.52
CPSF4-208ENST00000452047 NUTM2EB1AL46 878 aaPredicted RBP18.3■□□□□ 0.52
CPSF4-208ENST00000452047 NUTM2AQ8IVF1 878 aaPredicted RBP18.3■□□□□ 0.52
CPSF4-208ENST00000452047 KIF1AQ12756 1690 aa18.29■□□□□ 0.52
CPSF4-208ENST00000452047 ESCO1Q5FWF5 840 aa18.29■□□□□ 0.52
CPSF4-208ENST00000452047 RGPD8O14715 1765 aaPredicted RBP18.29■□□□□ 0.52
CPSF4-208ENST00000452047 ADGRB2O60241 1585 aa18.29■□□□□ 0.52
CPSF4-208ENST00000452047 NPHP3Q7Z494 1330 aa18.28■□□□□ 0.52
CPSF4-208ENST00000452047 DCAF11Q8TEB1 546 aa18.28■□□□□ 0.52
CPSF4-208ENST00000452047 ZNF772Q68DY9 489 aaPredicted RBP18.27■□□□□ 0.52
CPSF4-208ENST00000452047 STAC3Q96MF2 364 aa18.27■□□□□ 0.52
CPSF4-208ENST00000452047 NUTM2FA1L443 756 aa18.26■□□□□ 0.51
CPSF4-208ENST00000452047 PRAM1Q96QH2 718 aa18.26■□□□□ 0.51
CPSF4-208ENST00000452047 KDM2AQ9Y2K7 1162 aa18.26■□□□□ 0.51
CPSF4-208ENST00000452047 USP32Q8NFA0 1604 aa18.24■□□□□ 0.51
CPSF4-208ENST00000452047 FOXO3O43524 673 aa18.24■□□□□ 0.51
CPSF4-208ENST00000452047 AFF2P51816 1311 aa18.23■□□□□ 0.51
CPSF4-208ENST00000452047 ARHGEF28Q8N1W1 1705 aaKnown RBP18.23■□□□□ 0.51
CPSF4-208ENST00000452047 SAFB2Q14151 953 aaKnown RBP eCLIP18.22■□□□□ 0.51
CPSF4-208ENST00000452047 KIAA1210Q9ULL0 1709 aa18.22■□□□□ 0.51
CPSF4-208ENST00000452047 MARF1Q9Y4F3 1742 aaKnown RBP18.21■□□□□ 0.51
CPSF4-208ENST00000452047 XPCQ01831 940 aaPredicted RBP18.21■□□□□ 0.51
CPSF4-208ENST00000452047 C8orf37Q96NL8 207 aa18.21■□□□□ 0.51
CPSF4-208ENST00000452047 TRAK1Q9UPV9 953 aa18.21■□□□□ 0.51
CPSF4-208ENST00000452047 POGKQ9P215 609 aa18.2■□□□□ 0.5
CPSF4-208ENST00000452047 ANKARQ7Z5J8 1434 aa18.2■□□□□ 0.5
CPSF4-208ENST00000452047 CDK12Q9NYV4 1490 aaPredicted RBP18.19■□□□□ 0.5
CPSF4-208ENST00000452047 ADAMTS2O95450 1211 aa18.18■□□□□ 0.5
CPSF4-208ENST00000452047 PHF8Q9UPP1 1060 aa18.17■□□□□ 0.5
CPSF4-208ENST00000452047 TULP4Q9NRJ4 1543 aa18.17■□□□□ 0.5
CPSF4-208ENST00000452047 RXRBP28702 533 aa18.16■□□□□ 0.5
CPSF4-208ENST00000452047 SPATA31A3Q5VYP0 1347 aa18.16■□□□□ 0.5
CPSF4-208ENST00000452047 HIRIP3Q9BW71 556 aaPredicted RBP18.15■□□□□ 0.5
CPSF4-208ENST00000452047 TNS3Q68CZ2 1445 aa18.15■□□□□ 0.5
CPSF4-208ENST00000452047 KRT28Q7Z3Y7 464 aa18.14■□□□□ 0.49
CPSF4-208ENST00000452047 NGLY1Q96IV0 654 aa18.14■□□□□ 0.49
CPSF4-208ENST00000452047 MINK1Q8N4C8 1332 aaPredicted RBP18.14■□□□□ 0.49
CPSF4-208ENST00000452047 ABCA3Q99758 1704 aa18.14■□□□□ 0.49
CPSF4-208ENST00000452047 TRPM3Q9HCF6 1732 aaPredicted RBP18.14■□□□□ 0.49
CPSF4-208ENST00000452047 FNBP4Q8N3X1 1017 aaPredicted RBP18.13■□□□□ 0.49
CPSF4-208ENST00000452047 PRR36Q9H6K5 1346 aa18.13■□□□□ 0.49
CPSF4-208ENST00000452047 EIF3AQ14152 1382 aaKnown RBP18.13■□□□□ 0.49
CPSF4-208ENST00000452047 QTRT2Q9H974 415 aaKnown RBP18.12■□□□□ 0.49
CPSF4-208ENST00000452047 SBNO1A3KN83 1393 aa18.12■□□□□ 0.49
CPSF4-208ENST00000452047 RGS12O14924 1447 aa18.12■□□□□ 0.49
CPSF4-208ENST00000452047 ITSN1Q15811 1721 aa18.12■□□□□ 0.49
CPSF4-208ENST00000452047 WASLO00401 505 aaPredicted RBP18.11■□□□□ 0.49
CPSF4-208ENST00000452047 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.11■□□□□ 0.49
CPSF4-208ENST00000452047 ATP7BP35670 1465 aa18.1■□□□□ 0.49
CPSF4-208ENST00000452047 BCL9LQ86UU0 1499 aa18.1■□□□□ 0.49
CPSF4-208ENST00000452047 RBM6P78332 1123 aaKnown RBP18.1■□□□□ 0.49
CPSF4-208ENST00000452047 USP21Q9UK80 565 aa18.1■□□□□ 0.49
CPSF4-208ENST00000452047 ALS2Q96Q42 1657 aa18.09■□□□□ 0.49
CPSF4-208ENST00000452047 ATRNO75882 1429 aa18.09■□□□□ 0.49
CPSF4-208ENST00000452047 PSME1Q06323 249 aa18.09■□□□□ 0.49
CPSF4-208ENST00000452047 PMFBP1Q8TBY8 1022 aa18.09■□□□□ 0.49
CPSF4-208ENST00000452047 TOPAZ1Q8N9V7 1692 aa18.09■□□□□ 0.49
CPSF4-208ENST00000452047 NBPF1Q3BBV0 1214 aa18.08■□□□□ 0.48
CPSF4-208ENST00000452047 EP400Q96L91 3159 aa18.08■□□□□ 0.48
CPSF4-208ENST00000452047 ARHGEF10O15013 1369 aa18.07■□□□□ 0.48
CPSF4-208ENST00000452047 SLIT2O94813 1529 aa18.07■□□□□ 0.48
CPSF4-208ENST00000452047 TRPM1Q7Z4N2 1603 aa18.06■□□□□ 0.48
CPSF4-208ENST00000452047 L3MBTL2Q969R5 705 aa18.06■□□□□ 0.48
CPSF4-208ENST00000452047 TRPC5Q9UL62 973 aaPredicted RBP18.06■□□□□ 0.48
CPSF4-208ENST00000452047 SIN3AQ96ST3 1273 aa18.05■□□□□ 0.48
CPSF4-208ENST00000452047 CRYBG1Q9Y4K1 1723 aa18.05■□□□□ 0.48
CPSF4-208ENST00000452047 PLCH1Q4KWH8 1693 aa18.05■□□□□ 0.48
CPSF4-208ENST00000452047 UPF1Q92900 1129 aaKnown RBP eCLIP18.04■□□□□ 0.48
CPSF4-208ENST00000452047 NWD2Q9ULI1 1742 aa18.03■□□□□ 0.48
CPSF4-208ENST00000452047 QRICH2Q9H0J4 1663 aa18.03■□□□□ 0.48
CPSF4-208ENST00000452047 CABLES1Q8TDN4 633 aa18.03■□□□□ 0.48
CPSF4-208ENST00000452047 GPRASP1Q5JY77 1395 aa18.03■□□□□ 0.48
CPSF4-208ENST00000452047 NUDT16Q96DE0 195 aaKnown RBP18.02■□□□□ 0.48
CPSF4-208ENST00000452047 LMOD2Q6P5Q4 547 aa18.01■□□□□ 0.47
CPSF4-208ENST00000452047 CDK19Q9BWU1 502 aa18.01■□□□□ 0.47
CPSF4-208ENST00000452047 GLI3P10071 1580 aa18■□□□□ 0.47
CPSF4-208ENST00000452047 UNC5CLQ8IV45 518 aa17.99■□□□□ 0.47
CPSF4-208ENST00000452047 NGDNQ8NEJ9 315 aaKnown RBP17.99■□□□□ 0.47
CPSF4-208ENST00000452047 POLR3AO14802 1390 aaPredicted RBP17.99■□□□□ 0.47
CPSF4-208ENST00000452047 CENPJQ9HC77 1338 aaPredicted RBP17.98■□□□□ 0.47
CPSF4-208ENST00000452047 NRAPQ86VF7 1730 aa17.98■□□□□ 0.47
CPSF4-208ENST00000452047 HAP1P54257 671 aaPredicted RBP17.98■□□□□ 0.47
CPSF4-208ENST00000452047 NEUROD1Q13562 356 aa17.98■□□□□ 0.47
CPSF4-208ENST00000452047 RALGAPBQ86X10 1494 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms